comparison heatmap2.xml @ 2:c6bfec911a41 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit f9fb73a88ab8b52ce11c25a966d4fe99e67c9fbf

1:cb04f3235a4e

<tool id="ggplot2_heatmap2" name="heatmap2" version="@VERSION@">
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="3.0.1">r-gplots</requirement>
        <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
    </expand>
    <command detect_errors="exit_code"><![CDATA[
cat '$script' &&
Rscript '$script' &&
mv output_plot.pdf $output1
    ]]></command>

Input data should have row labels in the first column and column labels. For example, the row labels (the first column) should represent gene IDs and the column labels should represent sample IDs. 

This wrapper employs the heatmap.2 function of R.
    ]]></help>
    <expand macro="citations"/>
</tool>

2:c6bfec911a41

<tool id="ggplot2_heatmap2" name="heatmap2" version="@VERSION@+galaxy0">
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="3.0.1">r-gplots</requirement>
        <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
cat '$script' &&
Rscript '$script' &&
mv output_plot.pdf $output1
    ]]></command>

Input data should have row labels in the first column and column labels. For example, the row labels (the first column) should represent gene IDs and the column labels should represent sample IDs. 

This wrapper employs the heatmap.2 function of R.
    ]]></help>
    <citations>
    </citations>
</tool>