comparison ggplot2_pca.xml @ 9:ae344ccf9d62 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 6737c924917eea8c009c30d7f9917d5a341b9948

8:b1268b7544d3

<tool id="ggplot2_pca" name="PCA plot w ggplot2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
    <expand macro="bio_tools"/>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="0.4.14">r-ggfortify</requirement>
        <requirement type="package" version="2.1.0">r-svglite</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[

    </inputs>
    <outputs>
        <expand macro="additional_output" />
    </outputs>
    <tests>
        <test>
            <param name="input1" value="mtcars.txt" ftype="tabular"/>
            <conditional name="inputdata">
                <param name="input_type" value="with_header_rownames"/>
                <param name="header" value="TRUE"/>
                <param name="row_names_index" value="1"/>

                    </conditional>
                </repeat>
                <param name="circle" value="convex"/>
            </conditional>
            <param name="additional_output_format" value="pdf"/>
            <output name="output2" file="ggplot_pca_result1.pdf" compare="sim_size"/>
        </test>
    </tests>
    <help><![CDATA[
**What it does**

9:ae344ccf9d62

<tool id="ggplot2_pca" name="PCA plot w ggplot2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <requirements>
        <requirement type="package" version="0.4.14">r-ggfortify</requirement>
        <requirement type="package" version="2.1.0">r-svglite</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[

    </inputs>
    <outputs>
        <expand macro="additional_output" />
    </outputs>
    <tests>
        <test expect_num_outputs="2">
            <param name="input1" value="mtcars.txt" ftype="tabular"/>
            <conditional name="inputdata">
                <param name="input_type" value="with_header_rownames"/>
                <param name="header" value="TRUE"/>
                <param name="row_names_index" value="1"/>

                    </conditional>
                </repeat>
                <param name="circle" value="convex"/>
            </conditional>
            <param name="additional_output_format" value="pdf"/>
            <output name="output2" file="ggplot_pca_result1.pdf" ftype="pdf" compare="sim_size"/>
        </test>
    </tests>
    <help><![CDATA[
**What it does**