diff ggplot2_pca.xml @ 5:fcb6a19960c6 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 4b44f8f834de15fd34e2fdc5e4aed282069f73af"

--- a/ggplot2_pca.xml	Tue Oct 26 15:13:06 2021 +0000
+++ b/ggplot2_pca.xml	Tue Nov 23 07:57:08 2021 +0000
@@ -1,11 +1,11 @@
-<tool id="ggplot2_pca" name="PCA plot w ggplot2" version="@VERSION@">
+<tool id="ggplot2_pca" name="PCA plot w ggplot2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
     <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.4.3">r-ggfortify</requirement>
-        <requirement type="package" version="1.2.1">r-svglite</requirement>
+        <requirement type="package" version="0.4.13">r-ggfortify</requirement>
+        <requirement type="package" version="2.0.0">r-svglite</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 cat '$script' &&
@@ -249,11 +249,19 @@
                 <repeat name="group_names" min="2" title="Group" help="Select the samples for this group">
                     <param name="groupName" type="text" optional="false" label="Group name"
                         help="Use short names, avoid special characters and numbers at the beginning of the name (The names might be changed by the program to make them conform to processing in R)">
-                        <validator type="no_options" message="Please choose a name for this group!"/>
+                        <sanitizer invalid_char="">
+                            <valid initial="string.letters,string.digits">
+                                <add value=":" />
+                                <add value="-" />
+                                <add value=" " />
+                                <add value="_" />
+                            </valid>
+                        </sanitizer>
+                        <validator type="regex" message="Value may include alphanumeric characters, colons, dashes, underscores and spaces.">[0-9a-zA-Z:-_ ]+</validator>
                     </param>
                     <param name="groupCols" type="data_column" data_ref="input1" multiple="true" min="1" label="Columns for group"
                         help="WARNING: please use columns indices after removing the row name column if selected in second section!">
-                        <validator type="no_options" message="Select at least one column for each group!"/>
+                        <validator type="regex" message="Select at least one column for each group!">[0-9a-zA-Z:-_ ]+</validator>
                         <!--<filter type="remove_value" meta_ref="groupCols" />-->
                     </param>
                     <conditional name="color_cond">