Mercurial > repos > iuc > ggplot2_violin
comparison macros.xml @ 7:e44775efb2dc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 4b44f8f834de15fd34e2fdc5e4aed282069f73af"
| author | iuc |
|---|---|
| date | Tue, 23 Nov 2021 07:57:58 +0000 |
| parents | dfd5d981b5a4 |
| children | d6c41b454cc1 |
comparison
equal
deleted
inserted
replaced
| 6:dfd5d981b5a4 | 7:e44775efb2dc |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <macros> | 2 <macros> |
| 3 <xml name="requirements"> | 3 <xml name="requirements"> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="@VERSION@">r-ggplot2</requirement> | 5 <requirement type="package" version="4.1.1">r-base</requirement> |
| 6 <requirement type="package" version="@TOOL_VERSION@">r-ggplot2</requirement> | |
| 6 <yield /> | 7 <yield /> |
| 7 </requirements> | 8 </requirements> |
| 8 </xml> | 9 </xml> |
| 9 <xml name="bio_tools"> | 10 <xml name="bio_tools"> |
| 10 <xrefs> | 11 <xrefs> |
| 11 <xref type="bio.tools">gemini</xref> | 12 <xref type="bio.tools">ggplot2</xref> |
| 12 </xrefs> | 13 </xrefs> |
| 13 </xml> | 14 </xml> |
| 14 <token name="@VERSION@">2.2.1</token> | 15 <token name="@TOOL_VERSION@">3.3.5</token> |
| 16 <token name="@VERSION_SUFFIX@">0</token> | |
| 17 | |
| 15 | 18 |
| 16 <token name="@R_INIT@"><![CDATA[ | 19 <token name="@R_INIT@"><![CDATA[ |
| 17 ## Setup R error handling to go to stderr | 20 ## Setup R error handling to go to stderr |
| 18 options(show.error.messages=F, error=function(){cat(geterrmessage(), file=stderr()); q("no",1,F)}) | 21 options(show.error.messages=F, error=function(){cat(geterrmessage(), file=stderr()); q("no",1,F)}) |
| 19 | 22 |
| 135 <conditional name="scaling"> | 138 <conditional name="scaling"> |
| 136 <param name="plot_scaling" type="select" label="Axis scaling"> | 139 <param name="plot_scaling" type="select" label="Axis scaling"> |
| 137 <option value="Automatic" selected="true">Automatic axis scaling</option> | 140 <option value="Automatic" selected="true">Automatic axis scaling</option> |
| 138 <option value="Defined">User-defined axis scales</option> | 141 <option value="Defined">User-defined axis scales</option> |
| 139 </param> | 142 </param> |
| 140 <when value="Automatic"> | 143 <when value="Automatic"/> |
| 141 <!--Do nothing here --> | |
| 142 </when> | |
| 143 <when value="Defined"> | 144 <when value="Defined"> |
| 144 <param name="xaxismin" type="float" value="0" label="minimal range of x-axis" /> | 145 <param name="xaxismin" type="float" value="0" label="minimal range of x-axis" /> |
| 145 <param name="xaxismax" type="float" value="3" label="maximal range of x-axis" /> | 146 <param name="xaxismax" type="float" value="3" label="maximal range of x-axis" /> |
| 146 <param name="yaxismin" type="float" value="0" label="minimal range of y-axis" /> | 147 <param name="yaxismin" type="float" value="0" label="minimal range of y-axis" /> |
| 147 <param name="yaxismax" type="float" value="3" label="maximal range of y-axis" /> | 148 <param name="yaxismax" type="float" value="3" label="maximal range of y-axis" /> |
| 152 <param name="title" type="text" value="" label="Plot title"> | 153 <param name="title" type="text" value="" label="Plot title"> |
| 153 <!--<sanitizer sanitize="false"/> --> | 154 <!--<sanitizer sanitize="false"/> --> |
| 154 </param> | 155 </param> |
| 155 </xml> | 156 </xml> |
| 156 <xml name="xy_lab"> | 157 <xml name="xy_lab"> |
| 157 <param name="xlab" type="text" value="title of x-axis" label="Label for x axis"> | 158 <param name="xlab" type="text" value="Title of x-axis" label="Label for x axis"> |
| 158 <sanitizer sanitize="false"/> | 159 <sanitizer sanitize="false"/> |
| 159 </param> | 160 </param> |
| 160 <param name="ylab" type="text" value="title of y-axis" label="Label for y axis"> | 161 <param name="ylab" type="text" value="Title of y-axis" label="Label for y axis"> |
| 161 <sanitizer sanitize="false"/> | 162 <sanitizer sanitize="false"/> |
| 162 </param> | 163 </param> |
| 163 </xml> | 164 </xml> |
| 164 <xml name="legend"> | 165 <xml name="legend"> |
| 165 <param name="legend" type="select" label="Legend options"> | 166 <param name="legend" type="select" label="Legend options"> |
| 172 <option value="bw">Black and white</option> | 173 <option value="bw">Black and white</option> |
| 173 <option value="Default">Default (grey)</option> | 174 <option value="Default">Default (grey)</option> |
| 174 </param> | 175 </param> |
| 175 </xml> | 176 </xml> |
| 176 <xml name="dimensions"> | 177 <xml name="dimensions"> |
| 177 <param name="unit_output_dim" type="select" label="Unit of output dimensions" help="default inches"> | 178 <param name="unit_output_dim" type="select" label="Unit of output dimensions" help="Default: inches."> |
| 178 <option value="in" selected="true">Inches (in)</option> | 179 <option value="in" selected="true">Inches (in)</option> |
| 179 <option value="cm">Centimeters (cm)</option> | 180 <option value="cm">Centimeters (cm)</option> |
| 180 <option value="mm">Millimeters (mm)</option> | 181 <option value="mm">Millimeters (mm)</option> |
| 181 </param> | 182 </param> |
| 182 <param name="width_output_dim" type="float" value="7" label="width of output"/> | 183 <param name="width_output_dim" type="float" value="7" label="width of output"/> |
| 183 <param name="height_output_dim" type="float" value="7" label="height of output"/> | 184 <param name="height_output_dim" type="float" value="7" label="height of output"/> |
| 184 <param name="dpi_output_dim" type="float" value="300" label="dpi of output" help="Plot resolution. Applies only to raster output types."/> | 185 <param name="dpi_output_dim" type="float" value="300" label="dpi of output" help="Plot resolution. Applies only to raster output types."/> |
| 185 <param name="additional_output_format" type="select" label="Additional output format" help="PNG is always selected as output format"> | 186 <param name="additional_output_format" type="select" label="Additional output format" help="PNG is always selected as output format."> |
| 186 <option value="none" selected="true">only PNG</option> | 187 <option value="none" selected="true">Only PNG</option> |
| 187 <option value="pdf">PDF</option> | 188 <option value="pdf">PDF</option> |
| 188 <option value="svg">SVG</option> | 189 <option value="svg">SVG</option> |
| 189 <option value="eps">EPS</option> | 190 <option value="eps">EPS</option> |
| 190 <option value="ps">PS</option> | 191 <option value="ps">PS</option> |
| 191 <option value="tex">TEX (pictex)</option> | 192 <option value="tex">TEX (pictex)</option> |
| 211 <xml name="axis_customization" token_label="Axis title options"> | 212 <xml name="axis_customization" token_label="Axis title options"> |
| 212 <param name="axis_customization" type="select" label="@LABEL@"> | 213 <param name="axis_customization" type="select" label="@LABEL@"> |
| 213 <option value="default" selected="true">Default</option> | 214 <option value="default" selected="true">Default</option> |
| 214 <option value="defined">User defined label options</option> | 215 <option value="defined">User defined label options</option> |
| 215 </param> | 216 </param> |
| 216 <when value="default"> | 217 <when value="default"/> |
| 217 <!--Do nothing here --> | |
| 218 </when> | |
| 219 <when value="defined"> | 218 <when value="defined"> |
| 220 <param name="size" type="float" value="12" label="Axis label size (default = 12)"/> | 219 <param name="size" type="float" value="12" label="Axis label size (default = 12)"/> |
| 221 <param name="color" type="select" label="Color of axis label"> | 220 <param name="color" type="select" label="Color of axis label"> |
| 222 <option value="black">Black (default)</option> | 221 <option value="black">Black (default)</option> |
| 223 <option value="red">Red</option> | 222 <option value="red">Red</option> |
| 291 <when input="out.additional_output_format" value="bmp" format="bmp" /> | 290 <when input="out.additional_output_format" value="bmp" format="bmp" /> |
| 292 </change_format> | 291 </change_format> |
| 293 <filter>out['additional_output_format'] != "none"</filter> | 292 <filter>out['additional_output_format'] != "none"</filter> |
| 294 </data> | 293 </data> |
| 295 </xml> | 294 </xml> |
| 295 <xml name="points_options"> | |
| 296 <conditional name="points"> | |
| 297 <param name="pointoptions" type="select" label="Data point options"> | |
| 298 <option value="default" selected="true">Default</option> | |
| 299 <option value="defined">User defined point options</option> | |
| 300 </param> | |
| 301 <when value="default"> | |
| 302 <!--Do nothing here --> | |
| 303 </when> | |
| 304 <when value="defined"> | |
| 305 <param name="size" type="float" value="1" label="relative size of points" /> | |
| 306 <param name="alpha" type="float" value="1" label="Transparency of points (On a scale of 0-1; 0=transparent, 1=default)" /> | |
| 307 <param name="pointcolor" type="select" label="Color of data points" > | |
| 308 <option value="black">Black (default)</option> | |
| 309 <option value="red">Red</option> | |
| 310 <option value="white">White</option> | |
| 311 <option value="blue">Blue</option> | |
| 312 <option value="orange">Orange</option> | |
| 313 <option value="yellow">Yellow</option> | |
| 314 <option value="green">Green</option> | |
| 315 <option value="purple">Purple</option> | |
| 316 <option value="magenta">Magenta</option> | |
| 317 <option value="cyan">Cyan</option> | |
| 318 <option value="grey">Grey</option> | |
| 319 <option value="gold">Gold</option> | |
| 320 </param> | |
| 321 </when> | |
| 322 </conditional> | |
| 323 </xml> | |
| 296 </macros> | 324 </macros> |