diff goseq.xml @ 10:43798b4caee0 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goseq commit 21f3eae641dd20a0f8724e0a05910396df8d028f

--- a/goseq.xml	Sun Jun 06 22:47:36 2021 +0000
+++ b/goseq.xml	Thu Jun 09 13:01:48 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="goseq" name="goseq" version="@VERSION@+@GALAXY_VERSION@">
+<tool id="goseq" name="goseq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>tests for overrepresented gene categories</description>
     <xrefs>
         <xref type="bio.tools">goseq</xref>
@@ -10,18 +10,20 @@
         <edam_operation>operation_2436</edam_operation>
     </edam_operations>
     <macros>
-        <token name="@VERSION@">1.44.0</token>
-        <token name="@GALAXY_VERSION@">galaxy0</token>
+        <token name="@TOOL_VERSION@">1.44.0</token>
+        <token name="@VERSION_SUFFIX@">2</token>
     </macros>
     <requirements>
-        <requirement type="package" version="@VERSION@">bioconductor-goseq</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">bioconductor-goseq</requirement>
         <requirement type="package" version="3.13.0">bioconductor-org.hs.eg.db</requirement>
         <requirement type="package" version="3.13.0">bioconductor-org.dm.eg.db</requirement>
         <requirement type="package" version="3.13.0">bioconductor-org.dr.eg.db</requirement>
         <requirement type="package" version="3.13.0">bioconductor-org.mm.eg.db</requirement>
-        <requirement type="package" version="1.0.6">r-dplyr</requirement>
-        <requirement type="package" version="3.3.3">r-ggplot2</requirement>
-        <requirement type="package" version="1.6.6">r-optparse</requirement>
+        <requirement type="package" version="3.13.0">bioconductor-org.rn.eg.db</requirement>
+        <requirement type="package" version="1.0.9">r-dplyr</requirement>
+        <requirement type="package" version="3.3.6">r-ggplot2</requirement>
+        <requirement type="package" version="1.7.1">r-optparse</requirement>
+        <requirement type="package" version="1.1.1o">openssl</requirement>
     </requirements>
     <stdio>
         <regex match="Execution halted"
@@ -104,6 +106,7 @@
                     <option value="mm10">Mouse (mm10)</option>
                     <option value="dm6">Fruit fly (dm6)</option>
                     <option value="danRer10">Zebrafish (danRer10)</option>
+                    <option value="rn6">Rat (rn6)</option>
                 </param>
                 <param name="gene_id" type="select" label="Select Gene ID format" help="Supported Gene IDs to automatically fetch categories should either be Entrez, Ensembl, or gene symbols.">
                     <option value="ensGene">Ensembl Gene ID</option>
@@ -523,4 +526,4 @@
     <citations>
         <citation type="doi">10.1186/gb-2010-11-2-r14</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>