Mercurial > repos > iuc > goseq

diff goseq.xml @ 5:bbcf5f7f2af2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goseq commit 2dffcdff171ebf695ef0fc7eb8f8264f0d132115
author iuc
date Mon, 28 Jan 2019 04:27:40 -0500
parents ae39895af5fe
children 07f6832bdd4d
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--- a/goseq.xml	Sun Sep 30 09:27:05 2018 -0400
+++ b/goseq.xml	Mon Jan 28 04:27:40 2019 -0500
@@ -1,14 +1,14 @@
-<tool id="goseq" name="goseq" version="1.30.1">
+<tool id="goseq" name="goseq" version="1.32.0">
     <description>tests for overrepresented gene categories</description>
     <requirements>
+        <requirement type="package" version="1.32.0">bioconductor-goseq</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-org.hs.eg.db</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-org.dm.eg.db</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-org.dr.eg.db</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-org.mm.eg.db</requirement>
+        <requirement type="package" version="0.7.8">r-dplyr</requirement>
+        <requirement type="package" version="3.1.0">r-ggplot2</requirement>
         <requirement type="package" version="1.6.0">r-optparse</requirement>
-        <requirement type="package" version="1.30.0">bioconductor-goseq</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.dm.eg.db</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.dr.eg.db</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
-        <requirement type="package" version="0.7.6">r-dplyr</requirement>
-        <requirement type="package" version="3.0.0">r-ggplot2</requirement>
     </requirements>
     <stdio>
         <regex match="Execution halted"
@@ -203,7 +203,7 @@
             <output name="wallenius_tab">
                 <assert_contents>
                     <has_text_matching expression="category.*over_represented_pvalue.*under_represented_pvalue.*numDEInCat.*numInCat.*term.*ontology.*p.adjust.over_represented.*p.adjust.under_represented" />
-                    <has_text_matching expression="GO:0031324.*0.08" />
+                    <has_text_matching expression="GO:0031324.*0.12" />
                 </assert_contents>
             </output>
         </test>