Mercurial > repos > iuc > gprofiler_snpense
changeset 0:f83a08dff6f0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gprofiler/ commit ed9b518a6aaf6a5aada47e39c039f6936e41b290"
| author | iuc |
|---|---|
| date | Thu, 14 Nov 2019 06:01:29 -0500 |
| parents | |
| children | 74385d563652 |
| files | README gprofiler_snpense.xml macros.xml test-data/example_convert_results.txt test-data/example_convert_results_2.txt test-data/example_gost_results.txt test-data/example_gost_results_2.txt test-data/example_gost_results_3.txt test-data/example_orth_results.txt test-data/example_orth_results_2.txt test-data/example_query.txt test-data/example_query_2.txt test-data/example_snpense_query.txt test-data/example_snpense_results.txt test-data/example_snpense_results_2.txt |
| diffstat | 14 files changed, 1058 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,52 @@ +Galaxy wrapper for gprofiler2 +========================= + +g:Profiler is a widely used toolset for finding biological categories enriched in gene lists, conversions between gene identifiers and mappings to their orthologs. Mission of g:Profiler is to provide a reliable service based on up to date high quality data in a convenient manner across many evidence types, identifier spaces and organisms. g:Profiler relies on Ensembl as a primary data source and follows their quarterly release cycle while updating the other data sources simultaneously. g:Profiler provides modern responsive interactive web interface, standardised API, an R package gprofiler2 and libraries. The results are delivered through interactive and configurable interface. Results can be downloaded as publication ready visualisations or delimited text files. g:Profiler supports close to 500 species and strains, including vertebrates, plants, fungi, insects and parasites. By supporting user uploaded custom GMT files, g:Profiler is capable of analysing data from any organism. All past releases are maintained for reproducibility and transparency. g:Profiler is freely available for all users at https://biit.cs.ut.ee/gprofiler. + +Installation +============ + +The recommended installation is by means of the toolshed_. + +.. _toolshed: http://toolshed.g2.bx.psu.edu/ + +As HTML content is blocked from display, to render optional Plotly output gProfiler GOSt (gprofiler_gost) should be allowed +at Admin > Tool Management > Manage whitelist. + + +History +======= + +* v0.1.6+galaxy10 - add custom background support, fix dependencies, add messages to stdout +* v0.1.6+galaxy9 - add notification, fix tests +* v0.1.6+galaxy8 - improve formatting +* v0.1.6+galaxy7 - add random tool, update gprofiler2 version, major refactoring, add tests +* v0.1.6+galaxy6 - fix tools' names +* v0.1.6+galaxy5 - remove random tool +* v0.1.6+galaxy4 - modify commands and names to lowercase +* v0.1.6+galaxy3 - add r-base to requirements, fixes for suite +* v0.1.6+galaxy2 - remove r-base from requirements, fixes for Linux +* v0.1.6+galaxy1 - add r-base to requirements +* v0.1.6+galaxy0 - initial release + + +Licence (MIT) +============= + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE.
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gprofiler_snpense.xml Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,77 @@ +<?xml version="1.0"?> +<tool id="gprofiler_snpense" name="gProfiler SNPense" version="@VERSION@"> + <description>maps SNP rs-codes to gene names, chromosomal coordinates and variant effects</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"></expand> + <expand macro="version_command" /> + <command detect_errors="aggressive">Rscript $script_file</command> + <configfiles> + <configfile name="script_file"><![CDATA[ + +options( show.error.messages=F, error = function () { cat( geterrmessage(), file=stderr() ); q( "no", 1, F ) } ) +loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") + +suppressPackageStartupMessages({ + library("gprofiler2") +}) + +set_user_agent(paste(get_user_agent(), "galaxy")) +sessionInfo() + +#if $tool_settings.base_url + set_base_url('${tool_settings.base_url}') +#end if + +query <- scan('${input.file_name}', character(), quote = "") + +response <- gsnpense( query + , filter_na = ${filter_na} + ) + +output <- response +output[['ensgs']] <- vapply(output[['ensgs']], paste, collapse = ",", character(1L)) +output[['gene_names']] <- vapply(output[['gene_names']], paste, collapse = ",", character(1L)) + +output.colnames = append(colnames(output)[1:(length(colnames(output))-1)], colnames(output[['variants']])) +write.table(output, file='${output}', quote=FALSE, sep='\t', row.names = FALSE, col.names = output.colnames) + + ]]></configfile> + </configfiles> + <inputs> + <param name="input" type="data" format="txt" label="Input is whitespace-separated list of SNP IDs to be translated (should start with prefix ’rs’)." /> + <expand macro="filter_na" /> + <expand macro="tool_settings"></expand> + </inputs> + <outputs> + <data name="output" format="tabular" label="${tool.name} on ${on_string}" /> + </outputs> + <tests> + <test> + <param name="input" ftype="txt" value="example_snpense_query.txt" /> + <param name="base_url" value="http://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11" /> + <output name="output" ftype="tabular" file="example_snpense_results.txt" sort="true" /> + </test> + <test> + <param name="input" ftype="txt" value="example_snpense_query.txt" /> + <param name="base_url" value="http://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11" /> + <param name="filter_na" value="T" /> + <output name="output" ftype="tabular" file="example_snpense_results_2.txt" sort="true" /> + </test> + </tests> + + <help><![CDATA[ + +**What it does** + This tool wraps gprofiler2 R package which performs a request to g:Profiler g:SNPense tool through its API. + g:Profiler g:SNPense maps SNP rs identifiers to chromosome positions, genes and variant effects. Available only + for human SNPs. + +----- + +@REFERENCES@ + + ]]></help> + <expand macro="citations"></expand> +</tool> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,101 @@ +<?xml version="1.0"?> +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">r-gprofiler2</requirement> + <requirement type="package" version="2.7.3">pandoc</requirement> + <yield /> + </requirements> + </xml> + + <token name="@TOOL_VERSION@">0.1.7</token> + <token name="@VERSION@">@TOOL_VERSION@+galaxy10</token> + + <xml name="version_command"> + <version_command> + Rscript -e 'library(gprofiler2); packageVersion("gprofiler2")' | sed 's/\[1\] //' | sed 's/.//;s/.$//' + </version_command> + </xml> + + <token name="@REFERENCES@"><![CDATA[ + +This tool is part of the `g:Profiler`_ from the `University of Tartu`_. + + .. _g:Profiler: https://biit.cs.ut.ee/gprofiler/ + .. _University of Tartu: https://ut.ee/en/ + +**Resources** + * `A complete list of suppоrted organism IDs`_ + * `A complete list of supported namespaces`_ + + .. _A complete list of suppоrted organism IDs: https://biit.cs.ut.ee/gprofiler/page/organism-list + .. _A complete list of supported namespaces: https://biit.cs.ut.ee/gprofiler/page/namespaces-list + +**gprofiler2 R tool** + * https://CRAN.R-project.org/package=gprofiler2 — as CRAN package. + * https://anaconda.org/conda-forge/r-gprofiler2 — as conda-forge package. + +**Contact** + * Contact us at biit.support@ut.ee for further help. + +.. class:: warningmark + +By default the tool makes requests to APIs of the latest g:Profiler instance with the most recent data release. +Please, use ’Tool Settings → Base URL’ to modify it in case you want to make use of older data versions. Also, if the +results should be pinned for reproducibility, we suggest to modify the base url to the last archived data version. + + ]]></token> + + <xml name="input"> + <param name="input" type="data" format="txt" label="Input is whitespace-separated list of genes, proteins, probes, term IDs or chromosomal regions." /> + </xml> + <xml name="organism" token_name="organism" token_label="Organism" + token_hsapiens_selected="true" token_mmusculus_selected="false"> + <conditional name="@NAME@"> + <param name="select_input_type" type="select" label="@LABEL@"> + <option value="select">Common organisms</option> + <option value="input">Enter organism ID</option> + </param> + <when value="select"> + <param name="organism" type="select" label="Common organisms"> + <option value="athaliana">Arabidopsis thaliana</option> + <option value="afumigatusa1163">Aspergillus fumigatus A1163</option> + <option value="btaurus">Bos taurus (Cow)</option> + <option value="celegans">Caenorhabditis elegans</option> + <option value="cfamiliaris">Canis lupus familiaris (Dog)</option> + <option value="drerio">Danio rerio (Zebrafish)</option> + <option value="dmelanogaster">Drosophila melanogaster</option> + <option value="ggallus">Gallus gallus (Chicken)</option> + <option value="hsapiens" selected="@HSAPIENS_SELECTED@">Homo sapiens (Human)</option> + <option value="mmusculus" selected="@MMUSCULUS_SELECTED@">Mus musculus (Mouse)</option> + <option value="osativa">Oryza sativa Japonica Group</option> + <option value="pteres">Pyrenophora teres f. teres 0-1 (Pyrenophora teres)</option> + <option value="rnorvegicus">Rattus norvegicus (Rat)</option> + <option value="scerevisiae">Saccharomyces cerevisiae</option> + <option value="zmays">Zea mays</option> + </param> + </when> + <when value="input"> + <param name="organism" type="text" value="hsapiens" label="Enter organism ID" help="Organism IDs are constructed by concatenating the first letter of the generic name and the specific name. E.g., human — Homo sapiens — ’hsapiens’, mouse — Mus musculus — ’mmusculus’, thale cress — Arabidopsis thaliana — ’athaliana’. Check the help section below for the complete list of supported organism IDs." /> + </when> + </conditional> + </xml> + + <xml name="filter_na"> + <param name="filter_na" type="boolean" checked="false" truevalue="T" falsevalue="F" label="Filter N/A" help="Whether to filter out results without a corresponding target name." /> + </xml> + + <xml name="tool_settings"> + <section name="tool_settings" title="Tool settings" expanded="false"> + <param type="text" name="base_url" label="Base URL" optional="true" help="Useful for overriding the default URL (http://biit.cs.ut.ee/gprofiler) with the beta (https://biit.cs.ut.ee/gprofiler_beta) or a compatible archived version (available starting from the version e94_eg41_p11, e.g. https://biit.cs.ut.ee/gprofiler_archive3/e94_eg41_p11)." value="http://biit.cs.ut.ee/gprofiler" /> + <yield /> + </section> + </xml> + + <xml name="citations"> + <citations> + <citation type="doi">doi:10.1093/nar/gkz369</citation> + <yield /> + </citations> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_convert_results.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,32 @@ +input_number input target_number target name description namespace +4 ENSG00000156103 4.1 ENSG00000156103 MMP16 matrix metallopeptidase 16 [Source:HGNC Symbol;Acc:HGNC:7162] ARRAYEXPRESS,ENSG +3 GO:0005005 3.1 ENSG00000044524 EPHA3 EPH receptor A3 [Source:HGNC Symbol;Acc:HGNC:3387] GO +3 GO:0005005 3.2 ENSG00000070886 EPHA8 EPH receptor A8 [Source:HGNC Symbol;Acc:HGNC:3391] GO +3 GO:0005005 3.3 ENSG00000080224 EPHA6 EPH receptor A6 [Source:HGNC Symbol;Acc:HGNC:19296] GO +3 GO:0005005 3.4 ENSG00000108947 EFNB3 ephrin B3 [Source:HGNC Symbol;Acc:HGNC:3228] GO +3 GO:0005005 3.5 ENSG00000116106 EPHA4 EPH receptor A4 [Source:HGNC Symbol;Acc:HGNC:3388] GO +3 GO:0005005 3.6 ENSG00000133216 EPHB2 EPH receptor B2 [Source:HGNC Symbol;Acc:HGNC:3393] GO +3 GO:0005005 3.7 ENSG00000135333 EPHA7 EPH receptor A7 [Source:HGNC Symbol;Acc:HGNC:3390] GO +3 GO:0005005 3.8 ENSG00000142627 EPHA2 EPH receptor A2 [Source:HGNC Symbol;Acc:HGNC:3386] GO +3 GO:0005005 3.9 ENSG00000143590 EFNA3 ephrin A3 [Source:HGNC Symbol;Acc:HGNC:3223] GO +3 GO:0005005 3.10 ENSG00000145242 EPHA5 EPH receptor A5 [Source:HGNC Symbol;Acc:HGNC:3389] GO +3 GO:0005005 3.11 ENSG00000146904 EPHA1 EPH receptor A1 [Source:HGNC Symbol;Acc:HGNC:3385] GO +3 GO:0005005 3.12 ENSG00000154928 EPHB1 EPH receptor B1 [Source:HGNC Symbol;Acc:HGNC:3392] GO +3 GO:0005005 3.13 ENSG00000182580 EPHB3 EPH receptor B3 [Source:HGNC Symbol;Acc:HGNC:3394] GO +3 GO:0005005 3.14 ENSG00000183317 EPHA10 EPH receptor A10 [Source:HGNC Symbol;Acc:HGNC:19987] GO +3 GO:0005005 3.15 ENSG00000196411 EPHB4 EPH receptor B4 [Source:HGNC Symbol;Acc:HGNC:3395] GO +3 GO:0005005 3.16 ENSG00000243364 EFNA4 ephrin A4 [Source:HGNC Symbol;Acc:HGNC:3224] GO +5 NLRP1 5.1 ENSG00000091592 NLRP1 NLR family pyrin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14374] ENTREZGENE,HGNC,UNIPROT_GN,WIKIGENE +2 rs17396340 2.1 ENSG00000054523 KIF1B kinesin family member 1B [Source:HGNC Symbol;Acc:HGNC:16636] +1 X:1000:1000000 1.1 ENSG00000167393 PPP2R3B protein phosphatase 2 regulatory subunit B''beta [Source:HGNC Symbol;Acc:HGNC:13417] +1 X:1000:1000000 1.2 ENSG00000178605 GTPBP6 GTP binding protein 6 (putative) [Source:HGNC Symbol;Acc:HGNC:30189] +1 X:1000:1000000 1.3 ENSG00000182378 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23148] +1 X:1000:1000000 1.4 ENSG00000185960 SHOX short stature homeobox [Source:HGNC Symbol;Acc:HGNC:10853] +1 X:1000:1000000 1.5 ENSG00000226179 LINC00685 long intergenic non-protein coding RNA 685 [Source:HGNC Symbol;Acc:HGNC:27560] +1 X:1000:1000000 1.6 ENSG00000228572 AL954722.1 regucalcin (RGN) pseudogene +1 X:1000:1000000 1.7 ENSG00000229232 KRT18P53 keratin 18 pseudogene 53 [Source:HGNC Symbol;Acc:HGNC:38714] +1 X:1000:1000000 1.8 ENSG00000234958 FABP5P13 fatty acid binding protein 5 pseudogene 13 [Source:HGNC Symbol;Acc:HGNC:38717] +1 X:1000:1000000 1.9 ENSG00000237531 AL672277.1 novel transcript +1 X:1000:1000000 1.10 ENSG00000275287 RF00017 None +1 X:1000:1000000 1.11 ENSG00000280767 AL732314.4 novel transcript +1 X:1000:1000000 1.12 ENSG00000281849 AL732314.6 novel transcript, antisense to PPP2R3B
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_convert_results_2.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,22 @@ +input_number input target_number target name description namespace +21 114142 21.1 AC122816 Foxp2 forkhead box P2 [Source:MGI Symbol;Acc:MGI:2148705] WIKIGENE_ACC +2 ENSMUSG00000004791 2.1 AC127582 Pgf placental growth factor [Source:MGI Symbol;Acc:MGI:105095] ARRAYEXPRESS,ENSG +1 ENSMUSG00000009900 1.1 X56842 Wnt3a wingless-type MMTV integration site family, member 3A [Source:MGI Symbol;Acc:MGI:98956] ARRAYEXPRESS,ENSG +15 ENSMUSG00000017756 15.1 AC158359 Slc12a7 solute carrier family 12, member 7 [Source:MGI Symbol;Acc:MGI:1342283] ARRAYEXPRESS,ENSG +16 ENSMUSG00000021678 16.1 AK144986 F2rl1 coagulation factor II (thrombin) receptor-like 1 [Source:MGI Symbol;Acc:MGI:101910] ARRAYEXPRESS,ENSG +7 ENSMUSG00000027168 7.1 AK028059 Pax6 paired box 6 [Source:MGI Symbol;Acc:MGI:97490] ARRAYEXPRESS,ENSG +10 ENSMUSG00000028164 10.1 AC110164 Manba mannosidase, beta A, lysosomal [Source:MGI Symbol;Acc:MGI:88175] ARRAYEXPRESS,ENSG +12 ENSMUSG00000028341 12.1 AF191211 Nr4a3 nuclear receptor subfamily 4, group A, member 3 [Source:MGI Symbol;Acc:MGI:1352457] ARRAYEXPRESS,ENSG +6 ENSMUSG00000029909 6.1 AK006028 Prss37 protease, serine 37 [Source:MGI Symbol;Acc:MGI:1914940] ARRAYEXPRESS,ENSG +18 ENSMUSG00000030036 18.1 AF001797 Mogs mannosyl-oligosaccharide glucosidase [Source:MGI Symbol;Acc:MGI:1929872] ARRAYEXPRESS,ENSG +9 ENSMUSG00000031256 9.1 AF317552 Cstf2 cleavage stimulation factor, 3' pre-RNA subunit 2 [Source:MGI Symbol;Acc:MGI:1343054] ARRAYEXPRESS,ENSG +3 ENSMUSG00000031520 3.1 AK047844 Vegfc vascular endothelial growth factor C [Source:MGI Symbol;Acc:MGI:109124] ARRAYEXPRESS,ENSG +11 ENSMUSG00000031871 11.1 AC132390 Cdh5 cadherin 5 [Source:MGI Symbol;Acc:MGI:105057] ARRAYEXPRESS,ENSG +4 ENSMUSG00000035273 4.1 AC161510 Hpse heparanase [Source:MGI Symbol;Acc:MGI:1343124] ARRAYEXPRESS,ENSG +20 ENSMUSG00000038886 20.1 AC136740 Man2a2 mannosidase 2, alpha 2 [Source:MGI Symbol;Acc:MGI:2150656] ARRAYEXPRESS,ENSG +5 ENSMUSG00000039100 5.1 AK042980 March6 membrane-associated ring finger (C3HC4) 6 [Source:MGI Symbol;Acc:MGI:2442773] ARRAYEXPRESS,ENSG +14 ENSMUSG00000047719 14.1 AK004550 Ubiad1 UbiA prenyltransferase domain containing 1 [Source:MGI Symbol;Acc:MGI:1918957] ARRAYEXPRESS,ENSG +17 ENSMUSG00000048000 17.1 AC157811 Gigyf2 GRB10 interacting GYF protein 2 [Source:MGI Symbol;Acc:MGI:2138584] ARRAYEXPRESS,ENSG +13 ENSMUSG00000061665 13.1 AC111082 Cd2ap CD2-associated protein [Source:MGI Symbol;Acc:MGI:1330281] ARRAYEXPRESS,ENSG +19 ENSMUSG00000074934 19.1 AF045801 Grem1 gremlin 1, DAN family BMP antagonist [Source:MGI Symbol;Acc:MGI:1344337] ARRAYEXPRESS,ENSG +8 ENSMUSG00000079644 8.1 AC138616 Gm1110 predicted gene 1110 [Source:MGI Symbol;Acc:MGI:2685956] ARRAYEXPRESS,ENSG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_gost_results.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,198 @@ +query significant p_value term_size query_size intersection_size precision recall term_id source term_name effective_domain_size source_order parents +query_1 TRUE 9.34374617405934e-31 81 22 16 0.727272727272727 0.197530864197531 GO:0048013 GO:BP ephrin receptor signaling pathway 17622 14818 GO:0007169 +query_1 TRUE 3.66537061342834e-16 245 22 13 0.590909090909091 0.0530612244897959 GO:0070374 GO:BP positive regulation of ERK1 and ERK2 cascade 17622 19303 GO:0070371,GO:0043410,GO:0070372 +query_1 TRUE 2.12399259822471e-15 388 22 14 0.636363636363636 0.0360824742268041 GO:0018108 GO:BP peptidyl-tyrosine phosphorylation 17622 6073 GO:0006468,GO:0018212 +query_1 TRUE 2.3671188038973e-15 391 22 14 0.636363636363636 0.0358056265984655 GO:0018212 GO:BP peptidyl-tyrosine modification 17622 6164 GO:0018193 +query_1 TRUE 2.83458830649309e-15 697 22 16 0.727272727272727 0.0229555236728838 GO:0007169 GO:BP transmembrane receptor protein tyrosine kinase signaling pathway 17622 3117 GO:0007167 +query_1 TRUE 1.44639156267605e-14 324 22 13 0.590909090909091 0.0401234567901235 GO:0070372 GO:BP regulation of ERK1 and ERK2 cascade 17622 19301 GO:0043408,GO:0070371 +query_1 TRUE 2.82352928169304e-14 341 22 13 0.590909090909091 0.0381231671554252 GO:0070371 GO:BP ERK1 and ERK2 cascade 17622 19300 GO:0000165 +query_1 TRUE 1.18922250318022e-12 1020 22 16 0.727272727272727 0.0156862745098039 GO:0007167 GO:BP enzyme linked receptor protein signaling pathway 17622 3115 GO:0007166 +query_1 TRUE 1.97042419708341e-11 565 22 13 0.590909090909091 0.0230088495575221 GO:0043410 GO:BP positive regulation of MAPK cascade 17622 12470 GO:0043408,GO:1902533,GO:0000165,GO:0001934 +query_1 TRUE 4.14375764393441e-10 264 22 10 0.454545454545455 0.0378787878787879 GO:0007411 GO:BP axon guidance 17622 3333 GO:0097485,GO:0007409 +query_1 TRUE 4.30355852796394e-10 265 22 10 0.454545454545455 0.0377358490566038 GO:0097485 GO:BP neuron projection guidance 17622 22468 GO:0006928,GO:0006935,GO:0048812 +query_1 TRUE 1.21912705663141e-09 780 22 13 0.590909090909091 0.0166666666666667 GO:0043408 GO:BP regulation of MAPK cascade 17622 12468 GO:0001932,GO:1902531,GO:0000165 +query_1 TRUE 6.55773650056281e-09 496 22 11 0.5 0.0221774193548387 GO:0061564 GO:BP axon development 17622 18795 GO:0031175 +query_1 TRUE 1.11680978622729e-08 929 22 13 0.590909090909091 0.0139935414424112 GO:0000165 GO:BP MAPK cascade 17622 72 GO:0035556,GO:0023014 +query_1 TRUE 1.40392803081479e-08 946 22 13 0.590909090909091 0.0137420718816068 GO:0043066 GO:BP negative regulation of apoptotic process 17622 12291 GO:0006915,GO:0043069,GO:0042981 +query_1 TRUE 1.46112034570365e-08 949 22 13 0.590909090909091 0.0136986301369863 GO:0023014 GO:BP signal transduction by protein phosphorylation 17622 7706 GO:0007165,GO:0006468 +query_1 TRUE 1.4941304807234e-08 1214 22 14 0.636363636363636 0.0115321252059308 GO:0018193 GO:BP peptidyl-amino acid modification 17622 6145 GO:0006464 +query_1 TRUE 1.51174121581038e-08 726 22 12 0.545454545454545 0.0165289256198347 GO:0000904 GO:BP cell morphogenesis involved in differentiation 17622 315 GO:0000902,GO:0048468 +query_1 TRUE 1.68959705719079e-08 960 22 13 0.590909090909091 0.0135416666666667 GO:0043069 GO:BP negative regulation of programmed cell death 17622 12294 GO:0043067,GO:0012501,GO:0060548 +query_1 TRUE 2.8817204840834e-08 1589 22 15 0.681818181818182 0.00943989930774072 GO:0032270 GO:BP positive regulation of cellular protein metabolic process 17622 8735 GO:0044267,GO:0031325,GO:0051247,GO:0032268 +query_1 TRUE 3.36463871373171e-08 1014 22 13 0.590909090909091 0.0128205128205128 GO:0001934 GO:BP positive regulation of protein phosphorylation 17622 680 GO:0001932,GO:0031401,GO:0042327,GO:0006468 +query_1 TRUE 3.75984663526078e-08 1023 22 13 0.590909090909091 0.0127077223851417 GO:1902533 GO:BP positive regulation of intracellular signal transduction 17622 25966 GO:1902531,GO:0009967,GO:0035556 +query_1 TRUE 4.7948657304268e-08 1043 22 13 0.590909090909091 0.012464046021093 GO:0060548 GO:BP negative regulation of cell death 17622 17846 GO:0010941,GO:0048523,GO:0008219 +query_1 TRUE 6.01383271880582e-08 1062 22 13 0.590909090909091 0.012241054613936 GO:0042327 GO:BP positive regulation of phosphorylation 17622 11825 GO:0042325,GO:0045937,GO:0016310 +query_1 TRUE 6.99783726411038e-08 1690 22 15 0.681818181818182 0.00887573964497041 GO:0051247 GO:BP positive regulation of protein metabolic process 17622 16072 GO:0019538,GO:0010604,GO:0051246,GO:0051173 +query_1 TRUE 7.38494847487264e-08 621 22 11 0.5 0.0177133655394525 GO:0006935 GO:BP chemotaxis 17622 2918 GO:0042221,GO:0042330 +query_1 TRUE 7.64400072496617e-08 623 22 11 0.5 0.0176565008025682 GO:0042330 GO:BP taxis 17622 11826 GO:0040011,GO:0009605 +query_1 TRUE 9.33797652584234e-08 456 22 10 0.454545454545455 0.0219298245614035 GO:0007409 GO:BP axonogenesis 17622 3332 GO:0048812,GO:0061564,GO:0048667 +query_1 TRUE 1.30815374082031e-07 1130 22 13 0.590909090909091 0.0115044247787611 GO:0010562 GO:BP positive regulation of phosphorus metabolic process 17622 4770 GO:0006793,GO:0031325,GO:0051174 +query_1 TRUE 1.30815374082031e-07 1130 22 13 0.590909090909091 0.0115044247787611 GO:0045937 GO:BP positive regulation of phosphate metabolic process 17622 13966 GO:0019220,GO:0006796,GO:0010562 +query_1 TRUE 3.61704897700561e-07 1226 22 13 0.590909090909091 0.0106035889070147 GO:0031401 GO:BP positive regulation of protein modification process 17622 8389 GO:0031399,GO:0032270,GO:0006464 +query_1 TRUE 4.97609512091032e-07 1576 22 14 0.636363636363636 0.00888324873096447 GO:0042981 GO:BP regulation of apoptotic process 17622 12228 GO:0006915,GO:0043067 +query_1 TRUE 5.08245830519487e-07 1260 22 13 0.590909090909091 0.0103174603174603 GO:0009968 GO:BP negative regulation of signal transduction 17622 4324 GO:0010648,GO:0048585,GO:0007165,GO:0023057,GO:0009966 +query_1 TRUE 5.55186845823592e-07 1589 22 14 0.636363636363636 0.00881057268722467 GO:0043067 GO:BP regulation of programmed cell death 17622 12292 GO:0010941,GO:0012501 +query_1 TRUE 6.29541148203993e-07 1001 22 12 0.545454545454545 0.011988011988012 GO:0000902 GO:BP cell morphogenesis 17622 313 GO:0032989 +query_1 TRUE 6.36425058054875e-07 1972 22 15 0.681818181818182 0.00760649087221095 GO:0006915 GO:BP apoptotic process 17622 2900 GO:0012501 +query_1 TRUE 8.6850112245492e-07 573 22 10 0.454545454545455 0.0174520069808028 GO:0048667 GO:BP cell morphogenesis involved in neuron differentiation 17622 15301 GO:0048666,GO:0000904 +query_1 TRUE 1.3705684073153e-06 1365 22 13 0.590909090909091 0.00952380952380952 GO:0010648 GO:BP negative regulation of cell communication 17622 4850 GO:0048523,GO:0007154,GO:0010646 +query_1 TRUE 1.42104913465594e-06 1369 22 13 0.590909090909091 0.00949598246895544 GO:0023057 GO:BP negative regulation of signaling 17622 7736 GO:0023052,GO:0023051,GO:0048519 +query_1 TRUE 1.47264371598142e-06 1710 22 14 0.636363636363636 0.00818713450292398 GO:0010941 GO:BP regulation of cell death 17622 5121 GO:0050794,GO:0008219 +query_1 TRUE 1.5866806899515e-06 2103 22 15 0.681818181818182 0.00713266761768902 GO:0012501 GO:BP programmed cell death 17622 5176 GO:0008219 +query_1 TRUE 1.81242953339547e-06 1737 22 14 0.636363636363636 0.00805987334484744 GO:0019220 GO:BP regulation of phosphate metabolic process 17622 6548 GO:0006796,GO:0051174 +query_1 TRUE 1.84026396755314e-06 1739 22 14 0.636363636363636 0.00805060379528465 GO:0051174 GO:BP regulation of phosphorus metabolic process 17622 16013 GO:0031323,GO:0006793 +query_1 TRUE 1.85935810153133e-06 1100 22 12 0.545454545454545 0.0109090909090909 GO:0032989 GO:BP cellular component morphogenesis 17622 9269 GO:0009653,GO:0016043,GO:0048869 +query_1 TRUE 1.99130069819231e-06 2137 22 15 0.681818181818182 0.00701918577445016 GO:0006928 GO:BP movement of cell or subcellular component 17622 2911 GO:0009987 +query_1 TRUE 2.38757099905197e-06 2605 22 16 0.727272727272727 0.00614203454894434 GO:0032268 GO:BP regulation of cellular protein metabolic process 17622 8733 GO:0031323,GO:0044267,GO:0051246 +query_1 TRUE 2.46009982489409e-06 638 22 10 0.454545454545455 0.0156739811912226 GO:0048812 GO:BP neuron projection morphogenesis 17622 15438 GO:0120039,GO:0031175 +query_1 TRUE 2.49742004684699e-06 1433 22 13 0.590909090909091 0.00907187718073971 GO:0001932 GO:BP regulation of protein phosphorylation 17622 678 GO:0042325,GO:0031399,GO:0006468 +query_1 TRUE 3.0339199303519e-06 652 22 10 0.454545454545455 0.0153374233128834 GO:0120039 GO:BP plasma membrane bounded cell projection morphogenesis 17622 23320 GO:0048858 +query_1 TRUE 3.05977343417951e-06 44 22 5 0.227272727272727 0.113636363636364 GO:0008038 GO:BP neuron recognition 17622 3552 GO:0008037,GO:0048666 +query_1 TRUE 3.07913644454743e-06 653 22 10 0.454545454545455 0.0153139356814701 GO:0048858 GO:BP cell projection morphogenesis 17622 15483 GO:0030030,GO:0000902,GO:0032990 +query_1 TRUE 3.50887019343132e-06 1826 22 14 0.636363636363636 0.00766703176341731 GO:0031399 GO:BP regulation of protein modification process 17622 8387 GO:0006464,GO:0032268 +query_1 TRUE 3.75228890449306e-06 2235 22 15 0.681818181818182 0.00671140939597315 GO:0008219 GO:BP cell death 17622 3609 GO:0009987 +query_1 TRUE 4.06042328518338e-06 672 22 10 0.454545454545455 0.0148809523809524 GO:0032990 GO:BP cell part morphogenesis 17622 9270 GO:0032989 +query_1 TRUE 6.10018850208719e-06 1541 22 13 0.590909090909091 0.00843608046722907 GO:0042325 GO:BP regulation of phosphorylation 17622 11823 GO:0019220,GO:0016310 +query_1 TRUE 6.11200422960915e-06 3288 22 17 0.772727272727273 0.00517031630170316 GO:0010604 GO:BP positive regulation of macromolecule metabolic process 17622 4807 GO:0009893,GO:0060255,GO:0043170 +query_1 TRUE 6.11272058543602e-06 2773 22 16 0.727272727272727 0.00576992426974396 GO:0051246 GO:BP regulation of protein metabolic process 17622 16071 GO:0080090,GO:0060255,GO:0019538,GO:0051171 +query_1 TRUE 6.43376587908506e-06 1912 22 14 0.636363636363636 0.00732217573221757 GO:0040011 GO:BP locomotion 17622 11581 GO:0008150 +query_1 TRUE 7.2640105771551e-06 957 22 11 0.5 0.0114942528735632 GO:0031175 GO:BP neuron projection development 17622 8302 GO:0120036,GO:0048666 +query_1 TRUE 7.42711768864795e-06 1933 22 14 0.636363636363636 0.00724262803931712 GO:0006468 GO:BP protein phosphorylation 17622 2491 GO:0006464,GO:0016310 +query_1 TRUE 1.04268845662611e-05 1610 22 13 0.590909090909091 0.00807453416149068 GO:0048585 GO:BP negative regulation of response to stimulus 17622 15230 GO:0048583,GO:0048519,GO:0050896 +query_1 TRUE 1.06667413640165e-05 1613 22 13 0.590909090909091 0.00805951642901426 GO:0009967 GO:BP positive regulation of signal transduction 17622 4323 GO:0007165,GO:0010647,GO:0048584,GO:0023056,GO:0009966 +query_1 TRUE 1.25054675828573e-05 228 22 7 0.318181818181818 0.0307017543859649 GO:0046777 GO:BP protein autophosphorylation 17622 14679 GO:0006468 +query_1 TRUE 1.67957449872931e-05 21 22 4 0.181818181818182 0.19047619047619 GO:0007413 GO:BP axonal fasciculation 17622 3335 GO:0008038,GO:0061564,GO:0106030 +query_1 TRUE 1.67957449872931e-05 21 22 4 0.181818181818182 0.19047619047619 GO:0031290 GO:BP retinal ganglion cell axon guidance 17622 8333 GO:0007411 +query_1 TRUE 1.67957449872931e-05 21 22 4 0.181818181818182 0.19047619047619 GO:0106030 GO:BP neuron projection fasciculation 17622 23128 GO:0031175 +query_1 TRUE 1.71197075011249e-05 1337 22 12 0.545454545454545 0.00897531787584144 GO:0030182 GO:BP neuron differentiation 17622 7813 GO:0048699,GO:0030154 +query_1 TRUE 1.98998562509067e-05 3541 22 17 0.772727272727273 0.00480090369951991 GO:0009893 GO:BP positive regulation of metabolic process 17622 4269 GO:0008152,GO:0019222,GO:0048518 +query_1 TRUE 2.21030756351781e-05 3022 22 16 0.727272727272727 0.00529450694904037 GO:0007166 GO:BP cell surface receptor signaling pathway 17622 3114 GO:0007165 +query_1 TRUE 2.69386411722158e-05 1085 22 11 0.5 0.0101382488479263 GO:0048666 GO:BP neuron development 17622 15300 GO:0048468,GO:0030182 +query_1 TRUE 3.34892685642471e-05 1772 22 13 0.590909090909091 0.00733634311512415 GO:0010647 GO:BP positive regulation of cell communication 17622 4849 GO:0048522,GO:0007154,GO:0010646 +query_1 TRUE 3.48897531499307e-05 1778 22 13 0.590909090909091 0.00731158605174353 GO:0023056 GO:BP positive regulation of signaling 17622 7735 GO:0023052,GO:0023051,GO:0048518 +query_1 TRUE 3.76054489912955e-05 3132 22 16 0.727272727272727 0.00510855683269476 GO:0051173 GO:BP positive regulation of nitrogen compound metabolic process 17622 16012 GO:0006807,GO:0009893,GO:0051171 +query_1 TRUE 4.07663164839214e-05 1801 22 13 0.590909090909091 0.00721821210438645 GO:1902531 GO:BP regulation of intracellular signal transduction 17622 25964 GO:0035556,GO:0009966 +query_1 TRUE 4.1783065270797e-05 26 22 4 0.181818181818182 0.153846153846154 GO:0021952 GO:BP central nervous system projection neuron axonogenesis 17622 7567 GO:0021955 +query_1 TRUE 5.13331864412234e-05 1474 22 12 0.545454545454545 0.00814111261872456 GO:0120036 GO:BP plasma membrane bounded cell projection organization 17622 23319 GO:0030030 +query_1 TRUE 5.49581417513205e-05 1483 22 12 0.545454545454545 0.00809170600134862 GO:0048699 GO:BP generation of neurons 17622 15332 GO:0022008 +query_1 TRUE 6.44433426631058e-05 3248 22 16 0.727272727272727 0.00492610837438424 GO:0031325 GO:BP positive regulation of cellular metabolic process 17622 8347 GO:0031323,GO:0009893,GO:0048522,GO:0044237 +query_1 TRUE 6.72629988146576e-05 1510 22 12 0.545454545454545 0.00794701986754967 GO:0030030 GO:BP cell projection organization 17622 7759 GO:0016043 +query_1 TRUE 8.37998585493125e-05 2328 22 14 0.636363636363636 0.00601374570446735 GO:0016310 GO:BP phosphorylation 17622 5847 GO:0006796 +query_1 TRUE 0.000109230471387964 1577 22 12 0.545454545454545 0.00760938490805327 GO:0022008 GO:BP neurogenesis 17622 7623 GO:0007399,GO:0030154 +query_1 TRUE 0.00012876876538095 34 22 4 0.181818181818182 0.117647058823529 GO:0021955 GO:BP central nervous system neuron axonogenesis 17622 7570 GO:0021954,GO:0007409 +query_1 TRUE 0.000274742501884071 2111 22 13 0.590909090909091 0.00615821885362387 GO:0048468 GO:BP cell development 17622 15138 GO:0048856,GO:0030154,GO:0048869 +query_1 TRUE 0.000304653544710921 215 22 6 0.272727272727273 0.027906976744186 GO:0008037 GO:BP cell recognition 17622 3551 GO:0009987 +query_1 TRUE 0.000402990775057092 2631 22 14 0.636363636363636 0.00532117065754466 GO:0009653 GO:BP anatomical structure morphogenesis 17622 4071 GO:0032502,GO:0048856 +query_1 TRUE 0.000643305269862116 3239 22 15 0.681818181818182 0.00463105896881754 GO:0006796 GO:BP phosphate-containing compound metabolic process 17622 2797 GO:0006793 +query_1 TRUE 0.000664173912900232 2274 22 13 0.590909090909091 0.00571679859278804 GO:0050790 GO:BP regulation of catalytic activity 17622 15688 GO:0065009 +query_1 TRUE 0.000717065493678545 3265 22 15 0.681818181818182 0.00459418070444104 GO:0006793 GO:BP phosphorus metabolic process 17622 2794 GO:0044237 +query_1 TRUE 0.000863859709923053 54 22 4 0.181818181818182 0.0740740740740741 GO:0060997 GO:BP dendritic spine morphogenesis 17622 18281 GO:0031175,GO:0060996,GO:0048812,GO:0097061,GO:0048813 +query_1 TRUE 0.00107065019148393 2368 22 13 0.590909090909091 0.00548986486486487 GO:0048584 GO:BP positive regulation of response to stimulus 17622 15229 GO:0048583,GO:0050896,GO:0048518 +query_1 TRUE 0.00108073076195169 912 22 9 0.409090909090909 0.00986842105263158 GO:0035239 GO:BP tube morphogenesis 17622 10354 GO:0035295,GO:0009653 +query_1 TRUE 0.00161741352411335 1267 22 10 0.454545454545455 0.00789265982636148 GO:0051336 GO:BP regulation of hydrolase activity 17622 16146 GO:0050790 +query_1 TRUE 0.00211512407298892 4127 22 16 0.727272727272727 0.00387690816573782 GO:0030154 GO:BP cell differentiation 17622 7799 GO:0048869 +query_1 TRUE 0.00232474998443082 2 22 2 0.0909090909090909 1 GO:0097156 GO:BP fasciculation of motor neuron axon 17622 22290 GO:0007413 +query_1 TRUE 0.00326351215025867 75 22 4 0.181818181818182 0.0533333333333333 GO:0097061 GO:BP dendritic spine organization 17622 22242 GO:0106027,GO:0099173 +query_1 TRUE 0.00326351215025867 75 22 4 0.181818181818182 0.0533333333333333 GO:0021954 GO:BP central nervous system neuron development 17622 7569 GO:0048666,GO:0021953 +query_1 TRUE 0.00370489578091503 1387 22 10 0.454545454545455 0.00720980533525595 GO:0007155 GO:BP cell adhesion 17622 3103 GO:0022610 +query_1 TRUE 0.00388110059295944 4306 22 16 0.727272727272727 0.00371574547143521 GO:0048869 GO:BP cellular developmental process 17622 15493 GO:0032502,GO:0009987 +query_1 TRUE 0.00390422838949597 1395 22 10 0.454545454545455 0.00716845878136201 GO:0022610 GO:BP biological adhesion 17622 7681 GO:0008150 +query_1 TRUE 0.00396848678825966 182 22 5 0.227272727272727 0.0274725274725275 GO:0050770 GO:BP regulation of axonogenesis 17622 15673 GO:0010975,GO:0010769,GO:0007409 +query_1 TRUE 0.00490185220243868 83 22 4 0.181818181818182 0.0481927710843374 GO:0106027 GO:BP neuron projection organization 17622 23126 GO:0120036 +query_1 TRUE 0.00502827376762268 191 22 5 0.227272727272727 0.0261780104712042 GO:0050807 GO:BP regulation of synapse organization 17622 15702 GO:0050808,GO:0050803,GO:0051128 +query_1 TRUE 0.00508106506637193 1098 22 9 0.409090909090909 0.00819672131147541 GO:0035295 GO:BP tube development 17622 10389 GO:0048856,GO:0007275 +query_1 TRUE 0.00580987228766696 5839 22 18 0.818181818181818 0.00308271964377462 GO:0019538 GO:BP protein metabolic process 17622 6845 GO:1901564,GO:0043170,GO:0044238 +query_1 TRUE 0.00585033064601781 197 22 5 0.227272727272727 0.0253807106598985 GO:0050803 GO:BP regulation of synapse structure or activity 17622 15698 GO:0065008 +query_1 TRUE 0.00613145123549251 2751 22 13 0.590909090909091 0.00472555434387495 GO:0035556 GO:BP intracellular signal transduction 17622 10575 GO:0007165 +query_1 TRUE 0.00696897242778863 3 22 2 0.0909090909090909 0.666666666666667 GO:0097155 GO:BP fasciculation of sensory neuron axon 17622 22289 GO:0007413 +query_1 TRUE 0.00709723035855035 2311 22 12 0.545454545454545 0.00519255733448724 GO:0007399 GO:BP nervous system development 17622 3324 GO:0048731 +query_1 TRUE 0.00715017480380369 582 22 7 0.318181818181818 0.0120274914089347 GO:0001525 GO:BP angiogenesis 17622 452 GO:0048514,GO:0048646 +query_1 TRUE 0.00736539292838213 5182 22 17 0.772727272727273 0.00328058664608259 GO:0044267 GO:BP cellular protein metabolic process 17622 12892 GO:0044260,GO:0019538 +query_1 TRUE 0.00739870264348617 92 22 4 0.181818181818182 0.0434782608695652 GO:0060996 GO:BP dendritic spine development 17622 18280 GO:0048856,GO:0016358 +query_1 TRUE 0.00915738872933506 2367 22 12 0.545454545454545 0.00506970849176172 GO:0009605 GO:BP response to external stimulus 17622 4026 GO:0050896 +query_1 TRUE 0.00951816739709013 98 22 4 0.181818181818182 0.0408163265306122 GO:0051963 GO:BP regulation of synapse assembly 17622 16615 GO:0051960,GO:0050807,GO:0007416,GO:0044087 +query_1 TRUE 0.0100124507559839 6039 22 18 0.818181818181818 0.0029806259314456 GO:0048518 GO:BP positive regulation of biological process 17622 15173 GO:0008150,GO:0050789 +query_1 TRUE 0.0100833116909157 5291 22 17 0.772727272727273 0.00321300321300321 GO:0048522 GO:BP positive regulation of cellular process 17622 15177 GO:0050794,GO:0009987,GO:0048518 +query_1 TRUE 0.0143122320668208 4086 22 15 0.681818181818182 0.00367107195301028 GO:0036211 GO:BP protein modification process 17622 11052 GO:0019538,GO:0043412 +query_1 TRUE 0.0143122320668208 4086 22 15 0.681818181818182 0.00367107195301028 GO:0006464 GO:BP cellular protein modification process 17622 2488 GO:0044267,GO:0036211 +query_1 TRUE 0.0146217291033497 649 22 7 0.318181818181818 0.0107858243451464 GO:0120035 GO:BP regulation of plasma membrane bounded cell projection organization 17622 23318 GO:0120036,GO:0031344 +query_1 TRUE 0.0150095100971201 6193 22 18 0.818181818181818 0.00290650734700468 GO:0060255 GO:BP regulation of macromolecule metabolic process 17622 17563 GO:0043170,GO:0019222 +query_1 TRUE 0.0154828076934518 6205 22 18 0.818181818181818 0.00290088638195004 GO:0032502 GO:BP developmental process 17622 8898 GO:0008150 +query_1 TRUE 0.0163184598559883 660 22 7 0.318181818181818 0.0106060606060606 GO:0031344 GO:BP regulation of cell projection organization 17622 8365 GO:0030030,GO:0051128 +query_1 TRUE 0.0180293824664472 4801 22 16 0.727272727272727 0.00333263903353468 GO:0048731 GO:BP system development 17622 15364 GO:0048856,GO:0007275 +query_1 TRUE 0.018176311329341 671 22 7 0.318181818181818 0.0104321907600596 GO:0030155 GO:BP regulation of cell adhesion 17622 7800 GO:0007155,GO:0050789 +query_1 TRUE 0.0187125142883163 674 22 7 0.318181818181818 0.0103857566765579 GO:0048514 GO:BP blood vessel morphogenesis 17622 15169 GO:0035239,GO:0001568 +query_1 TRUE 0.0266868350500759 4286 22 15 0.681818181818182 0.00349976668222119 GO:0043412 GO:BP macromolecule modification 17622 12471 GO:0043170 +query_1 TRUE 0.0286037976399194 471 22 6 0.272727272727273 0.0127388535031847 GO:0043087 GO:BP regulation of GTPase activity 17622 12299 GO:0051336 +query_1 TRUE 0.031442373592368 3176 22 13 0.590909090909091 0.00409319899244332 GO:0065009 GO:BP regulation of molecular function 17622 19091 GO:0065007 +query_1 TRUE 0.0318973382267594 133 22 4 0.181818181818182 0.0300751879699248 GO:0099173 GO:BP postsynapse organization 17622 22921 GO:0050808,GO:0016043 +query_1 TRUE 0.0325926963087156 482 22 6 0.272727272727273 0.012448132780083 GO:0010975 GO:BP regulation of neuron projection development 17622 5152 GO:0031175,GO:0045664,GO:0120035 +query_1 TRUE 0.0335022836118213 3194 22 13 0.590909090909091 0.00407013149655604 GO:0009966 GO:BP regulation of signal transduction 17622 4322 GO:0048583,GO:0007165,GO:0023051,GO:0010646 +query_1 TRUE 0.0347658272382825 6 22 2 0.0909090909090909 0.333333333333333 GO:1902961 GO:BP positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process 17622 26336 GO:0010950,GO:1902993,GO:1902959,GO:1905247 +query_1 TRUE 0.0347658272382825 6 22 2 0.0909090909090909 0.333333333333333 GO:1905247 GO:BP positive regulation of aspartic-type peptidase activity 17622 28436 GO:1905245,GO:0010952 +query_1 TRUE 0.0347658272382825 6 22 2 0.0909090909090909 0.333333333333333 GO:0021631 GO:BP optic nerve morphogenesis 17622 7250 GO:0021602,GO:0021554 +query_1 TRUE 0.0393886303875096 756 22 7 0.318181818181818 0.00925925925925926 GO:0001568 GO:BP blood vessel development 17622 479 GO:0001944,GO:0048856 +query_1 TRUE 0.041263223340967 142 22 4 0.181818181818182 0.028169014084507 GO:0048813 GO:BP dendrite morphogenesis 17622 15439 GO:0016358,GO:0048812,GO:0048667 +query_1 TRUE 0.0425475834576789 5827 22 17 0.772727272727273 0.00291745323494079 GO:0051171 GO:BP regulation of nitrogen compound metabolic process 17622 16010 GO:0006807,GO:0019222 +query_1 TRUE 0.0427563327713742 297 22 5 0.227272727272727 0.0168350168350168 GO:0010769 GO:BP regulation of cell morphogenesis involved in differentiation 17622 4965 GO:0022604,GO:0060284,GO:0000904 +query_1 TRUE 0.0472644772020024 147 22 4 0.181818181818182 0.0272108843537415 GO:0010977 GO:BP negative regulation of neuron projection development 17622 5154 GO:0031175,GO:0045665,GO:0010975,GO:0031345 +query_1 TRUE 2.65876384050166e-14 396 23 13 0.565217391304348 0.0328282828282828 GO:0043235 GO:CC receptor complex 18745 2160 GO:0032991 +query_1 TRUE 1.3772397155221e-11 1655 23 17 0.739130434782609 0.0102719033232628 GO:0031226 GO:CC intrinsic component of plasma membrane 18745 1260 GO:0044459,GO:0031224 +query_1 TRUE 3.8628055593335e-09 1582 23 15 0.652173913043478 0.00948166877370417 GO:0005887 GO:CC integral component of plasma membrane 18745 533 GO:0031226,GO:0016021 +query_1 TRUE 5.14930107006119e-09 1300 23 14 0.608695652173913 0.0107692307692308 GO:0043005 GO:CC neuron projection 18745 2118 GO:0097458,GO:0120025 +query_1 TRUE 8.11979355536241e-09 1666 23 15 0.652173913043478 0.00900360144057623 GO:0097458 GO:CC neuron part 18745 3385 GO:0044464 +query_1 TRUE 8.73159919540344e-08 2830 23 17 0.739130434782609 0.00600706713780919 GO:0044459 GO:CC plasma membrane part 18745 2400 GO:0044425,GO:0044464,GO:0005886 +query_1 TRUE 2.53988122861433e-06 2076 23 14 0.608695652173913 0.00674373795761079 GO:0120025 GO:CC plasma membrane bounded cell projection 18745 3862 GO:0042995 +query_1 TRUE 3.81422436574517e-06 2142 23 14 0.608695652173913 0.0065359477124183 GO:0042995 GO:CC cell projection 18745 2117 GO:0044464 +query_1 TRUE 0.000956227721368842 590 23 7 0.304347826086957 0.011864406779661 GO:0030425 GO:CC dendrite 18745 1121 GO:0043005,GO:0120038,GO:0097447 +query_1 TRUE 0.000977775489394624 592 23 7 0.304347826086957 0.0118243243243243 GO:0097447 GO:CC dendritic tree 18745 3374 GO:0043005,GO:0036477 +query_1 TRUE 0.00244297848833948 5477 23 17 0.739130434782609 0.00310388899032317 GO:0005886 GO:CC plasma membrane 18745 532 GO:0016020,GO:0044464,GO:0071944 +query_1 TRUE 0.00326550902787627 5586 23 17 0.739130434782609 0.00304332259219477 GO:0071944 GO:CC cell periphery 18745 3145 GO:0044464 +query_1 TRUE 0.00539627561091703 5781 23 17 0.739130434782609 0.00294066770454939 GO:0031224 GO:CC intrinsic component of membrane 18745 1258 GO:0044425 +query_1 TRUE 0.00774009342951899 814 23 7 0.304347826086957 0.0085995085995086 GO:0036477 GO:CC somatodendritic compartment 18745 1988 GO:0097458 +query_1 TRUE 0.00969763507802725 5304 23 16 0.695652173913043 0.00301659125188537 GO:0032991 GO:CC protein-containing complex 18745 1592 GO:0005575 +query_1 TRUE 0.0146935936973663 186 23 4 0.173913043478261 0.021505376344086 GO:0098978 GO:CC glutamatergic synapse 18745 3718 GO:0045202 +query_1 TRUE 0.0403642126362718 1432 23 8 0.347826086956522 0.00558659217877095 GO:0120038 GO:CC plasma membrane bounded cell projection part 18745 3864 GO:0044463,GO:0120025 +query_1 TRUE 0.0403642126362718 1432 23 8 0.347826086956522 0.00558659217877095 GO:0044463 GO:CC cell projection part 18745 2404 GO:0044464,GO:0042995 +query_1 TRUE 2.03018714962777e-47 16 23 16 0.695652173913043 1 GO:0005005 GO:MF transmembrane-ephrin receptor activity 17516 1566 GO:0005003 +query_1 TRUE 1.96503023060084e-44 19 23 16 0.695652173913043 0.842105263157895 GO:0005003 GO:MF ephrin receptor activity 17516 1564 GO:0004714 +query_1 TRUE 9.74014504636099e-33 64 23 16 0.695652173913043 0.25 GO:0004714 GO:MF transmembrane receptor protein tyrosine kinase activity 17516 1313 GO:0004713,GO:0019199 +query_1 TRUE 6.65505380513481e-31 81 23 16 0.695652173913043 0.197530864197531 GO:0019199 GO:MF transmembrane receptor protein kinase activity 17516 4592 GO:0004672,GO:0004888 +query_1 TRUE 6.69811601347755e-25 182 23 16 0.695652173913043 0.0879120879120879 GO:0004713 GO:MF protein tyrosine kinase activity 17516 1312 GO:0004672 +query_1 TRUE 7.98740723599893e-16 659 23 16 0.695652173913043 0.0242792109256449 GO:0004672 GO:MF protein kinase activity 17516 1280 GO:0016301,GO:0140096,GO:0016773 +query_1 TRUE 1.57302342407419e-14 795 23 16 0.695652173913043 0.020125786163522 GO:0016773 GO:MF phosphotransferase activity, alcohol group as acceptor 17516 3807 GO:0016772 +query_1 TRUE 9.71253047853365e-14 892 23 16 0.695652173913043 0.0179372197309417 GO:0016301 GO:MF kinase activity 17516 3551 GO:0016772 +query_1 TRUE 1.15647297210478e-12 1044 23 16 0.695652173913043 0.0153256704980843 GO:0016772 GO:MF transferase activity, transferring phosphorus-containing groups 17516 3806 GO:0016740 +query_1 TRUE 1.58546481254835e-11 7 23 5 0.217391304347826 0.714285714285714 GO:0005004 GO:MF GPI-linked ephrin receptor activity 17516 1565 GO:0005003 +query_1 TRUE 1.6869565857934e-11 1239 23 16 0.695652173913043 0.0129136400322841 GO:0004888 GO:MF transmembrane signaling receptor activity 17516 1465 GO:0038023 +query_1 TRUE 2.02983103569407e-10 1454 23 16 0.695652173913043 0.0110041265474553 GO:0038023 GO:MF signaling receptor activity 17516 6614 GO:0060089 +query_1 TRUE 3.75669238650124e-10 1513 23 16 0.695652173913043 0.0105750165234633 GO:0060089 GO:MF molecular transducer activity 17516 9725 GO:0003674 +query_1 TRUE 8.80954094246384e-10 2334 23 18 0.782608695652174 0.0077120822622108 GO:0140096 GO:MF catalytic activity, acting on a protein 17516 11743 GO:0003824 +query_1 TRUE 6.55566958954096e-09 1491 23 15 0.652173913043478 0.0100603621730382 GO:0005524 GO:MF ATP binding 17516 1923 GO:0032559,GO:0008144,GO:0035639 +query_1 TRUE 7.55843118636016e-09 1839 23 16 0.695652173913043 0.00870038064165307 GO:0035639 GO:MF purine ribonucleoside triphosphate binding 17516 6444 GO:0043168,GO:1901265 +query_1 TRUE 1.11330396526275e-08 1547 23 15 0.652173913043478 0.0096961861667744 GO:0032559 GO:MF adenyl ribonucleotide binding 17516 5495 GO:0030554,GO:0032555 +query_1 TRUE 1.25529311221511e-08 1560 23 15 0.652173913043478 0.00961538461538462 GO:0030554 GO:MF adenyl nucleotide binding 17516 4960 GO:0017076 +query_1 TRUE 1.27499353595253e-08 1903 23 16 0.695652173913043 0.00840777719390436 GO:0032555 GO:MF purine ribonucleotide binding 17516 5491 GO:0032553,GO:0017076 +query_1 TRUE 1.43733018581564e-08 1918 23 16 0.695652173913043 0.00834202294056309 GO:0032553 GO:MF ribonucleotide binding 17516 5489 GO:0000166,GO:0097367 +query_1 TRUE 1.43733018581564e-08 1918 23 16 0.695652173913043 0.00834202294056309 GO:0017076 GO:MF purine nucleotide binding 17516 4025 GO:0000166 +query_1 TRUE 6.12626333869313e-08 1743 23 15 0.652173913043478 0.00860585197934595 GO:0008144 GO:MF drug binding 17516 2037 GO:0005488 +query_1 TRUE 8.33064536428471e-08 2153 23 16 0.695652173913043 0.00743149094287041 GO:0000166 GO:MF nucleotide binding 17516 35 GO:1901265,GO:0036094 +query_1 TRUE 8.38943008503727e-08 2154 23 16 0.695652173913043 0.0074280408542247 GO:1901265 GO:MF nucleoside phosphate binding 17516 11790 GO:1901363,GO:0097159 +query_1 TRUE 8.74477667929715e-08 9 23 4 0.173913043478261 0.444444444444444 GO:0008046 GO:MF axon guidance receptor activity 17516 1979 GO:0004888 +query_1 TRUE 8.79830072527301e-08 29 23 5 0.217391304347826 0.172413793103448 GO:0046875 GO:MF ephrin receptor binding 17516 7458 GO:0005102 +query_1 TRUE 1.41735168585418e-07 2230 23 16 0.695652173913043 0.00717488789237668 GO:0097367 GO:MF carbohydrate derivative binding 17516 10444 GO:0005488 +query_1 TRUE 4.28578386119048e-07 2400 23 16 0.695652173913043 0.00666666666666667 GO:0016740 GO:MF transferase activity 17516 3776 GO:0003824 +query_1 TRUE 1.01396980184892e-06 2542 23 16 0.695652173913043 0.00629425649095201 GO:0036094 GO:MF small molecule binding 17516 6491 GO:0005488 +query_1 TRUE 3.8415814367379e-06 2780 23 16 0.695652173913043 0.00575539568345324 GO:0043168 GO:MF anion binding 17516 6889 GO:0043167 +query_1 TRUE 6.56309698694573e-05 5931 23 20 0.869565217391304 0.00337211262856179 GO:0003824 GO:MF catalytic activity 17516 533 GO:0003674 +query_1 TRUE 0.0099786563469161 6191 23 18 0.782608695652174 0.00290744629300598 GO:0043167 GO:MF ion binding 17516 6888 GO:0005488 +query_1 TRUE 9.58039478222354e-21 173 18 15 0.833333333333333 0.0867052023121387 KEGG:04360 KEGG Axon guidance 7332 281 KEGG:00000 +query_1 TRUE 4.25184672520151e-33 49 20 16 0.8 0.326530612244898 REAC:R-HSA-3928665 REAC EPH-ephrin mediated repulsion of cells 10478 677 REAC:R-HSA-2682334 +query_1 TRUE 2.68599230814021e-28 90 20 16 0.8 0.177777777777778 REAC:R-HSA-2682334 REAC EPH-Ephrin signaling 10478 676 REAC:R-HSA-422475 +query_1 TRUE 2.26036763613955e-22 28 20 11 0.55 0.392857142857143 REAC:R-HSA-3928663 REAC EPHA-mediated growth cone collapse 10478 678 REAC:R-HSA-2682334 +query_1 TRUE 2.67681092605614e-15 548 20 16 0.8 0.0291970802919708 REAC:R-HSA-422475 REAC Axon guidance 10478 169 REAC:R-HSA-1266738 +query_1 TRUE 9.95911717421585e-11 1064 20 16 0.8 0.0150375939849624 REAC:R-HSA-1266738 REAC Developmental Biology 10478 626 REAC:0000000 +query_1 TRUE 2.37947163940067e-08 17 20 5 0.25 0.294117647058824 REAC:R-HSA-3928664 REAC Ephrin signaling 10478 704 REAC:R-HSA-2682334 +query_1 TRUE 2.4616095376173e-06 40 20 5 0.25 0.125 REAC:R-HSA-3928662 REAC EPHB-mediated forward signaling 10478 679 REAC:R-HSA-2682334 +query_1 TRUE 0.0279390317807751 21 10 2 0.2 0.0952380952380952 WP:WP4331 WP Neovascularisation processes 6376 194 WP:000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_gost_results_2.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,289 @@ +query significant p_value term_size query_size intersection_size precision recall term_id source term_name effective_domain_size source_order parents evidence_codes intersection +query_1 FALSE 1 6759 11 4 0.363636363636364 0.000591803521230951 GO:0016020 GO:CC membrane 55341 870 GO:0005575 ISO,IDA,ISS ISO IBA,IDA ISO IBA ENSMUSG00000009900,ENSMUSG00000035273,ENSMUSG00000039100,ENSMUSG00000031871 +query_1 FALSE 1 385 13 1 0.0769230769230769 0.0025974025974026 GO:0015629 GO:CC actin cytoskeleton 55341 857 GO:0005856 ISO ENSMUSG00000061665 +query_1 FALSE 1 2957 5 2 0.4 0.000676361176868448 GO:0012505 GO:CC endomembrane system 55341 837 GO:0044464 TAS,ISS ISO IBA ENSMUSG00000009900,ENSMUSG00000039100 +query_1 FALSE 1 56 17 1 0.0588235294117647 0.0178571428571429 GO:0010494 GO:CC cytoplasmic stress granule 55341 835 GO:0036464 ISO ENSMUSG00000048000 +query_1 FALSE 1 908 11 2 0.181818181818182 0.00220264317180617 GO:0009986 GO:CC cell surface 55341 811 GO:0044464 IDA,IDA ISO IBA ENSMUSG00000009900,ENSMUSG00000031871 +query_1 FALSE 1 481 11 1 0.0909090909090909 0.00207900207900208 GO:0009897 GO:CC external side of plasma membrane 55341 804 GO:0044459,GO:0098552,GO:0009986 IDA ENSMUSG00000031871 +query_1 FALSE 1 2927 14 2 0.142857142857143 0.000683293474547318 GO:0016021 GO:CC integral component of membrane 55341 871 GO:0031224 ISS ISO IBA,ISS ISO IBA ENSMUSG00000039100,ENSMUSG00000047719 +query_1 FALSE 1 259 13 1 0.0769230769230769 0.00386100386100386 GO:0005938 GO:CC cell cortex 55341 580 GO:0071944,GO:0099568 ISO ENSMUSG00000061665 +query_1 FALSE 1 96 11 1 0.0909090909090909 0.0104166666666667 GO:0005913 GO:CC cell-cell adherens junction 55341 556 GO:0005912,GO:0005911 IDA ISO IBA ENSMUSG00000031871 +query_1 FALSE 1 254 11 1 0.0909090909090909 0.00393700787401575 GO:0005912 GO:CC adherens junction 55341 555 GO:0070161 IDA ISO IBA ENSMUSG00000031871 +query_1 FALSE 1 393 11 1 0.0909090909090909 0.00254452926208651 GO:0005911 GO:CC cell-cell junction 55341 554 GO:0030054 IDA ISO IBA ENSMUSG00000031871 +query_1 FALSE 1 1293 16 1 0.0625 0.000773395204949729 GO:0005887 GO:CC integral component of plasma membrane 55341 533 GO:0031226,GO:0016021 ISO IBA ENSMUSG00000021678 +query_1 FALSE 1 4065 11 2 0.181818181818182 0.0004920049200492 GO:0005886 GO:CC plasma membrane 55341 532 GO:0016020,GO:0044464,GO:0071944 ISO,IDA ISO IBA ENSMUSG00000009900,ENSMUSG00000031871 +query_1 FALSE 1 98 13 1 0.0769230769230769 0.0102040816326531 GO:0005884 GO:CC actin filament 55341 530 GO:0015629,GO:0099513 ISO ENSMUSG00000061665 +query_1 FALSE 1 83 11 1 0.0909090909090909 0.0120481927710843 GO:0005923 GO:CC bicellular tight junction 55341 566 GO:0043296,GO:0070160 IDA IBA ENSMUSG00000031871 +query_1 FALSE 1 1509 13 1 0.0769230769230769 0.000662690523525514 GO:0005856 GO:CC cytoskeleton 55341 509 GO:0043232 ISO ENSMUSG00000061665 +query_1 FALSE 1 23 11 1 0.0909090909090909 0.0434782608695652 GO:0016342 GO:CC catenin complex 55341 887 GO:0098797,GO:0019897 IBA ENSMUSG00000031871 +query_1 FALSE 1 164 11 1 0.0909090909090909 0.00609756097560976 GO:0019897 GO:CC extrinsic component of plasma membrane 55341 1004 GO:0019898,GO:0044459 IBA ENSMUSG00000031871 +query_1 FALSE 1 45 14 1 0.0714285714285714 0.0222222222222222 GO:0031228 GO:CC intrinsic component of Golgi membrane 55341 1262 GO:0000139,GO:0044431,GO:0031300 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 126 5 1 0.2 0.00793650793650794 GO:0031227 GO:CC intrinsic component of endoplasmic reticulum membrane 55341 1261 GO:0031224,GO:0005789,GO:0044432 ISS ISO IBA ENSMUSG00000039100 +query_1 FALSE 1 1355 16 1 0.0625 0.000738007380073801 GO:0031226 GO:CC intrinsic component of plasma membrane 55341 1260 GO:0044459,GO:0031224 ISO IBA ENSMUSG00000021678 +query_1 FALSE 1 3038 14 2 0.142857142857143 0.000658327847267939 GO:0031224 GO:CC intrinsic component of membrane 55341 1258 GO:0044425 ISS ISO IBA,ISS ISO IBA ENSMUSG00000039100,ENSMUSG00000047719 +query_1 FALSE 1 12 16 1 0.0625 0.0833333333333333 GO:0031143 GO:CC pseudopodium 55341 1247 GO:0120025 IDA ENSMUSG00000021678 +query_1 FALSE 1 1503 14 1 0.0714285714285714 0.000665335994677312 GO:0031090 GO:CC organelle membrane 55341 1238 GO:0016020,GO:0044422,GO:0043227 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 597 9 1 0.111111111111111 0.0016750418760469 GO:0016604 GO:CC nuclear body 55341 919 GO:0044451 ISS ISO ENSMUSG00000031256 +query_1 FALSE 1 397 4 1 0.25 0.00251889168765743 GO:0031012 GO:CC extracellular matrix 55341 1220 GO:0044421 IBA TAS ENSMUSG00000035273 +query_1 FALSE 1 120 5 1 0.2 0.00833333333333333 GO:0030176 GO:CC integral component of endoplasmic reticulum membrane 55341 1106 GO:0031227,GO:0016021 ISS ISO IBA ENSMUSG00000039100 +query_1 FALSE 1 43 14 1 0.0714285714285714 0.0232558139534884 GO:0030173 GO:CC integral component of Golgi membrane 55341 1104 GO:0031228,GO:0031301 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 352 6 1 0.166666666666667 0.00284090909090909 GO:0030141 GO:CC secretory granule 55341 1101 GO:0099503,GO:0012505 ISS ISO IBA ENSMUSG00000029909 +query_1 FALSE 1 158 13 1 0.0769230769230769 0.00632911392405063 GO:0030139 GO:CC endocytic vesicle 55341 1099 GO:0031410 ISO ENSMUSG00000061665 +query_1 FALSE 1 615 11 1 0.0909090909090909 0.0016260162601626 GO:0030054 GO:CC cell junction 55341 1047 GO:0005575 IDA ISO IBA ENSMUSG00000031871 +query_1 FALSE 1 284 11 1 0.0909090909090909 0.00352112676056338 GO:0019898 GO:CC extrinsic component of membrane 55341 1005 GO:0044425 IBA ENSMUSG00000031871 +query_1 FALSE 1 625 17 1 0.0588235294117647 0.0016 GO:0030425 GO:CC dendrite 55341 1121 GO:0043005,GO:0120038,GO:0097447 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 343 13 1 0.0769230769230769 0.00291545189504373 GO:0031252 GO:CC cell leading edge 55341 1282 GO:0044464 ISO ENSMUSG00000061665 +query_1 FALSE 1 20 9 1 0.111111111111111 0.05 GO:0005849 GO:CC mRNA cleavage factor complex 55341 503 GO:0044451,GO:0032991 ISS ISO IBA ENSMUSG00000031256 +query_1 FALSE 1 3199 7 1 0.142857142857143 0.000312597686777118 GO:0005829 GO:CC cytosol 55341 487 GO:0044444 ISO ENSMUSG00000027168 +query_1 FALSE 1 130 13 1 0.0769230769230769 0.00769230769230769 GO:0001726 GO:CC ruffle 55341 200 GO:0031252,GO:0120025 ISO ENSMUSG00000061665 +query_1 FALSE 1 117 6 1 0.166666666666667 0.00854700854700855 GO:0001669 GO:CC acrosomal vesicle 55341 184 GO:0097223,GO:0030141 ISS ISO IBA ENSMUSG00000029909 +query_1 FALSE 1 378 7 1 0.142857142857143 0.00264550264550265 GO:0000790 GO:CC nuclear chromatin 55341 116 GO:0000785,GO:0044454 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 509 7 1 0.142857142857143 0.00196463654223969 GO:0000785 GO:CC chromatin 55341 111 GO:0044427 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 298 4 1 0.25 0.00335570469798658 GO:0000323 GO:CC lytic vacuole 55341 67 GO:0005773 ISO ENSMUSG00000035273 +query_1 FALSE 1 665 7 1 0.142857142857143 0.00150375939849624 GO:0000228 GO:CC nuclear chromosome 55341 42 GO:0031981,GO:0005694,GO:0044428 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 18788 11 10 0.909090909090909 0.000532254630615286 GO:0005575 GO:CC cellular_component 55341 255 IDA ISO IBA TAS NAS IC,IDA ISO IBA,IDA HDA IBA,IDA ISO IBA TAS,ISS ISO IBA,ISS ISO IBA,IDA ISO TAS,IBA,ISS ISO IBA,IDA ISO IBA ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000035273,ENSMUSG00000039100,ENSMUSG00000029909,ENSMUSG00000027168,ENSMUSG00000079644,ENSMUSG00000031256,ENSMUSG00000031871 +query_1 FALSE 1 202 14 1 0.0714285714285714 0.00495049504950495 GO:0000139 GO:CC Golgi membrane 55341 20 GO:0044431,GO:0098588 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 17 9 1 0.111111111111111 0.0588235294117647 GO:0005847 GO:CC mRNA cleavage and polyadenylation specificity factor complex 55341 501 GO:0005849 ISS ISO IBA ENSMUSG00000031256 +query_1 FALSE 1 1943 19 5 0.263157894736842 0.00257334019557385 GO:0005576 GO:CC extracellular region 55341 256 GO:0005575 IDA ISO IBA TAS,IDA ISO IBA,IDA HDA IBA,IBA TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000035273,ENSMUSG00000074934 +query_1 FALSE 1 11718 4 2 0.5 0.000170677590032429 GO:0005622 GO:CC intracellular 55341 299 GO:0044464 TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 1042 14 1 0.0714285714285714 0.000959692898272553 GO:0005794 GO:CC Golgi apparatus 55341 455 GO:0043231,GO:0044444,GO:0012505 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 461 5 1 0.2 0.00216919739696312 GO:0005789 GO:CC endoplasmic reticulum membrane 55341 450 GO:0044425,GO:0016020,GO:0042175,GO:0044432 ISS ISO IBA ENSMUSG00000039100 +query_1 FALSE 1 75 1 1 1 0.0133333333333333 GO:0005788 GO:CC endoplasmic reticulum lumen 55341 449 GO:0070013,GO:0044432 TAS ENSMUSG00000009900 +query_1 FALSE 1 1255 14 3 0.214285714285714 0.00239043824701195 GO:0005783 GO:CC endoplasmic reticulum 55341 444 GO:0043231,GO:0044444,GO:0012505 TAS,ISS ISO IBA,ISS ISO IBA ENSMUSG00000009900,ENSMUSG00000039100,ENSMUSG00000047719 +query_1 FALSE 1 380 4 1 0.25 0.00263157894736842 GO:0005773 GO:CC vacuole 55341 434 GO:0043231,GO:0044444 ISO ENSMUSG00000035273 +query_1 FALSE 1 227 16 1 0.0625 0.00440528634361234 GO:0005769 GO:CC early endosome 55341 431 GO:0005768 ISO ENSMUSG00000021678 +query_1 FALSE 1 1610 19 4 0.210526315789474 0.00248447204968944 GO:0005615 GO:CC extracellular space 55341 293 GO:0044421 IDA ISO IBA,IDA ISO IBA,IDA HDA IBA,IDA ISO ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000074934 +query_1 FALSE 1 606 16 1 0.0625 0.00165016501650165 GO:0005768 GO:CC endosome 55341 430 GO:0031410,GO:0012505 ISO ENSMUSG00000021678 +query_1 FALSE 1 8938 4 2 0.5 0.000223763705526964 GO:0005737 GO:CC cytoplasm 55341 402 GO:0044424 TAS,ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 942 7 1 0.142857142857143 0.00106157112526539 GO:0005694 GO:CC chromosome 55341 363 GO:0043232 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 359 7 1 0.142857142857143 0.00278551532033426 GO:0005667 GO:CC transcription factor complex 55341 338 GO:0044424,GO:0032991 TAS ENSMUSG00000027168 +query_1 FALSE 1 2560 4 1 0.25 0.000390625 GO:0005654 GO:CC nucleoplasm 55341 327 GO:0031981,GO:0044428 ISO ENSMUSG00000035273 +query_1 FALSE 1 5770 4 1 0.25 0.000173310225303293 GO:0005634 GO:CC nucleus 55341 310 GO:0043231 IDA ISO ENSMUSG00000035273 +query_1 FALSE 1 13712 4 2 0.5 0.00014585764294049 GO:0005623 GO:CC cell 55341 300 GO:0005575 IDA ISO TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 297 4 1 0.25 0.00336700336700337 GO:0005764 GO:CC lysosome 55341 426 GO:0000323 ISO ENSMUSG00000035273 +query_1 FALSE 1 219 14 1 0.0714285714285714 0.0045662100456621 GO:0031300 GO:CC intrinsic component of organelle membrane 55341 1297 GO:0044422,GO:0031224,GO:0031090 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 1381 6 1 0.166666666666667 0.000724112961622013 GO:0031410 GO:CC cytoplasmic vesicle 55341 1343 GO:0044444,GO:0097708 ISS ISO IBA ENSMUSG00000029909 +query_1 FALSE 1 1385 6 1 0.166666666666667 0.000722021660649819 GO:0097708 GO:CC intracellular vesicle 55341 3515 GO:0031982,GO:0043229 ISS ISO IBA ENSMUSG00000029909 +query_1 FALSE 1 1661 17 1 0.0588235294117647 0.000602046959662854 GO:0097458 GO:CC neuron part 55341 3385 GO:0044464 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 628 17 1 0.0588235294117647 0.00159235668789809 GO:0097447 GO:CC dendritic tree 55341 3374 GO:0043005,GO:0036477 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 211 6 1 0.166666666666667 0.004739336492891 GO:0097223 GO:CC sperm part 55341 3321 GO:0044464 ISS ISO IBA ENSMUSG00000029909 +query_1 FALSE 1 4198 11 2 0.181818181818182 0.000476417341591234 GO:0071944 GO:CC cell periphery 55341 3145 GO:0044464 ISO,IDA ISO IBA ENSMUSG00000009900,ENSMUSG00000031871 +query_1 FALSE 1 2 9 1 0.111111111111111 0.5 GO:0071920 GO:CC cleavage body 55341 3142 GO:0016604 ISS ISO ENSMUSG00000031256 +query_1 FALSE 1 650 11 1 0.0909090909090909 0.00153846153846154 GO:0098552 GO:CC side of membrane 55341 3569 GO:0044425 IDA ENSMUSG00000031871 +query_1 FALSE 1 268 11 1 0.0909090909090909 0.00373134328358209 GO:0070161 GO:CC anchoring junction 55341 2773 GO:0030054 IDA ISO IBA ENSMUSG00000031871 +query_1 FALSE 1 3762 4 2 0.5 0.000531632110579479 GO:0070013 GO:CC intracellular organelle lumen 55341 2728 GO:0043233,GO:0044424,GO:0043229 TAS,ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 580 13 1 0.0769230769230769 0.00172413793103448 GO:0048471 GO:CC perinuclear region of cytoplasm 55341 2571 GO:0044444 ISO ENSMUSG00000061665 +query_1 FALSE 1 1041 1 1 1 0.000960614793467819 GO:0045202 GO:CC synapse 55341 2476 GO:0005575 ISO ENSMUSG00000009900 +query_1 FALSE 1 320 4 1 0.25 0.003125 GO:0045121 GO:CC membrane raft 55341 2466 GO:0098857 IDA ENSMUSG00000035273 +query_1 FALSE 1 13712 4 2 0.5 0.00014585764294049 GO:0044464 GO:CC cell part 55341 2405 GO:0005623,GO:0005575 IDA ISO TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 1349 17 1 0.0588235294117647 0.000741289844329133 GO:0044463 GO:CC cell projection part 55341 2404 GO:0044464,GO:0042995 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 88 11 1 0.0909090909090909 0.0113636363636364 GO:0070160 GO:CC tight junction 55341 2772 GO:0005911 IDA IBA ENSMUSG00000031871 +query_1 FALSE 1 2549 11 2 0.181818181818182 0.00078462142016477 GO:0044459 GO:CC plasma membrane part 55341 2400 GO:0044425,GO:0044464,GO:0005886 ISO,IDA IBA ENSMUSG00000009900,ENSMUSG00000031871 +query_1 FALSE 1 908 14 1 0.0714285714285714 0.00110132158590308 GO:0098588 GO:CC bounding membrane of organelle 55341 3600 GO:0031090 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 948 11 2 0.181818181818182 0.00210970464135021 GO:0098796 GO:CC membrane protein complex 55341 3646 GO:0044425,GO:0032991 ISO,IBA ENSMUSG00000009900,ENSMUSG00000031871 +query_1 FALSE 1 3 1 1 1 0.333333333333333 GO:1990851 GO:CC Wnt-Frizzled-LRP5/6 complex 55341 4369 GO:0098797 ISO ENSMUSG00000009900 +query_1 FALSE 1 7 17 1 0.0588235294117647 0.142857142857143 GO:1990635 GO:CC proximal dendrite 55341 4293 GO:0030425 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 1349 17 1 0.0588235294117647 0.000741289844329133 GO:0120038 GO:CC plasma membrane bounded cell projection part 55341 3864 GO:0044463,GO:0120025 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 1923 13 1 0.0769230769230769 0.000520020800832033 GO:0120025 GO:CC plasma membrane bounded cell projection 55341 3862 GO:0042995 ISO ENSMUSG00000061665 +query_1 FALSE 1 401 13 1 0.0769230769230769 0.00249376558603491 GO:0099568 GO:CC cytoplasmic region 55341 3808 GO:0044444,GO:0005737 ISO ENSMUSG00000061665 +query_1 FALSE 1 409 13 1 0.0769230769230769 0.00244498777506112 GO:0099513 GO:CC polymeric cytoskeletal fiber 55341 3802 GO:0044430,GO:0099512 ISO ENSMUSG00000061665 +query_1 FALSE 1 332 4 1 0.25 0.00301204819277108 GO:0098589 GO:CC membrane region 55341 3601 GO:0044425,GO:0016020,GO:0098805 IDA ENSMUSG00000035273 +query_1 FALSE 1 608 13 1 0.0769230769230769 0.00164473684210526 GO:0099512 GO:CC supramolecular fiber 55341 3801 GO:0099081 ISO ENSMUSG00000061665 +query_1 FALSE 1 613 13 1 0.0769230769230769 0.00163132137030995 GO:0099081 GO:CC supramolecular polymer 55341 3771 GO:0099080 ISO ENSMUSG00000061665 +query_1 FALSE 1 614 13 1 0.0769230769230769 0.00162866449511401 GO:0099080 GO:CC supramolecular complex 55341 3770 GO:0005575 ISO ENSMUSG00000061665 +query_1 FALSE 1 282 1 1 1 0.00354609929078014 GO:0098978 GO:CC glutamatergic synapse 55341 3718 GO:0045202 ISO ENSMUSG00000009900 +query_1 FALSE 1 321 4 1 0.25 0.00311526479750779 GO:0098857 GO:CC membrane microdomain 55341 3678 GO:0098589 IDA ENSMUSG00000035273 +query_1 FALSE 1 958 4 1 0.25 0.00104384133611691 GO:0098805 GO:CC whole membrane 55341 3654 GO:0016020 IDA ENSMUSG00000035273 +query_1 FALSE 1 450 11 2 0.181818181818182 0.00444444444444444 GO:0098797 GO:CC plasma membrane protein complex 55341 3647 GO:0044459,GO:0098796 ISO,IBA ENSMUSG00000009900,ENSMUSG00000031871 +query_1 FALSE 1 522 6 1 0.166666666666667 0.00191570881226054 GO:0099503 GO:CC secretory vesicle 55341 3800 GO:0031410 ISS ISO IBA ENSMUSG00000029909 +query_1 FALSE 1 192 14 1 0.0714285714285714 0.00520833333333333 GO:0031301 GO:CC integral component of organelle membrane 55341 1298 GO:0016021,GO:0031300 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 630 7 1 0.142857142857143 0.00158730158730159 GO:0044454 GO:CC nuclear chromosome part 55341 2396 GO:0044428,GO:0044427,GO:0000228 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 6508 4 2 0.5 0.000307314074984634 GO:0044446 GO:CC intracellular organelle part 55341 2388 GO:0044424,GO:0044422,GO:0043229 TAS,ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 10321 4 2 0.5 0.000193779672512353 GO:0043226 GO:CC organelle 55341 2152 GO:0005575 TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 126 17 1 0.0588235294117647 0.00793650793650794 GO:0043204 GO:CC perikaryon 55341 2145 GO:0043025,GO:0097458 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 614 17 1 0.0588235294117647 0.00162866449511401 GO:0043025 GO:CC neuronal cell body 55341 2120 GO:0044297,GO:0097458,GO:0036477 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 1299 17 1 0.0588235294117647 0.000769822940723634 GO:0043005 GO:CC neuron projection 55341 2118 GO:0097458,GO:0120025 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 1955 13 1 0.0769230769230769 0.00051150895140665 GO:0042995 GO:CC cell projection 55341 2117 GO:0044464 ISO ENSMUSG00000061665 +query_1 FALSE 1 485 5 1 0.2 0.00206185567010309 GO:0042175 GO:CC nuclear outer membrane-endoplasmic reticulum membrane network 55341 2046 GO:0016020,GO:0044464,GO:0012505 ISS ISO IBA ENSMUSG00000039100 +query_1 FALSE 1 9309 4 2 0.5 0.000214845848103985 GO:0043227 GO:CC membrane-bounded organelle 55341 2153 GO:0043226 TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 899 17 1 0.0588235294117647 0.00111234705228031 GO:0036477 GO:CC somatodendritic compartment 55341 1988 GO:0097458 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 187 17 1 0.0588235294117647 0.0053475935828877 GO:0035770 GO:CC ribonucleoprotein granule 55341 1902 GO:1990904,GO:0043232 ISO ENSMUSG00000048000 +query_1 FALSE 1 4677 7 2 0.285714285714286 0.00042762454564892 GO:0032991 GO:CC protein-containing complex 55341 1592 GO:0005575 ISO NAS IC,TAS ENSMUSG00000009900,ENSMUSG00000027168 +query_1 FALSE 1 1503 6 1 0.166666666666667 0.000665335994677312 GO:0031982 GO:CC vesicle 55341 1475 GO:0043227 ISS ISO IBA ENSMUSG00000029909 +query_1 FALSE 1 3379 4 1 0.25 0.000295945546019532 GO:0031981 GO:CC nuclear lumen 55341 1474 GO:0044428,GO:0070013 ISO ENSMUSG00000035273 +query_1 FALSE 1 3767 4 2 0.5 0.000530926466684364 GO:0031974 GO:CC membrane-enclosed lumen 55341 1468 GO:0005575 TAS,ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 27 13 1 0.0769230769230769 0.037037037037037 GO:0031941 GO:CC filamentous actin 55341 1458 GO:0005884,GO:0044430,GO:0032991 ISO ENSMUSG00000061665 +query_1 FALSE 1 178 17 1 0.0588235294117647 0.00561797752808989 GO:0036464 GO:CC cytoplasmic ribonucleoprotein granule 55341 1987 GO:0035770,GO:0044444 ISO ENSMUSG00000048000 +query_1 FALSE 1 908 9 1 0.111111111111111 0.00110132158590308 GO:0044451 GO:CC nucleoplasm part 55341 2393 GO:0005654,GO:0044428 ISS ISO IBA ENSMUSG00000031256 +query_1 FALSE 1 3370 7 1 0.142857142857143 0.00029673590504451 GO:0043228 GO:CC non-membrane-bounded organelle 55341 2154 GO:0043226 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 8698 4 2 0.5 0.000229937916762474 GO:0043231 GO:CC intracellular membrane-bounded organelle 55341 2157 GO:0043227,GO:0043229 TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 7246 4 2 0.5 0.000276014352746343 GO:0044444 GO:CC cytoplasmic part 55341 2386 GO:0044424,GO:0005737 TAS,ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 585 18 3 0.166666666666667 0.00512820512820513 GO:0044432 GO:CC endoplasmic reticulum part 55341 2375 GO:0044444,GO:0005783,GO:0044446 TAS,ISS ISO IBA,IBA ENSMUSG00000009900,ENSMUSG00000039100,ENSMUSG00000030036 +query_1 FALSE 1 445 14 1 0.0714285714285714 0.00224719101123596 GO:0044431 GO:CC Golgi apparatus part 55341 2374 GO:0044444,GO:0005794,GO:0044446 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 1256 13 1 0.0769230769230769 0.000796178343949045 GO:0044430 GO:CC cytoskeletal part 55341 2373 GO:0005856,GO:0044446 ISO ENSMUSG00000061665 +query_1 FALSE 1 3810 4 1 0.25 0.00026246719160105 GO:0044428 GO:CC nuclear part 55341 2371 GO:0005634,GO:0044446 ISO ENSMUSG00000035273 +query_1 FALSE 1 885 7 1 0.142857142857143 0.00112994350282486 GO:0044427 GO:CC chromosomal part 55341 2370 GO:0005694,GO:0044446 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 10025 4 2 0.5 0.000199501246882793 GO:0043229 GO:CC intracellular organelle 55341 2155 GO:0044424,GO:0043226 TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 4805 4 2 0.5 0.000416233090530697 GO:0044425 GO:CC membrane part 55341 2368 GO:0016020,GO:0005575 ISO,IDA ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 6800 4 2 0.5 0.000294117647058824 GO:0044422 GO:CC organelle part 55341 2365 GO:0043226,GO:0005575 TAS,ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 1814 19 5 0.263157894736842 0.00275633958103638 GO:0044421 GO:CC extracellular region part 55341 2364 GO:0005576,GO:0005575 IDA ISO IBA,IDA ISO IBA,IDA HDA IBA,IBA TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000035273,ENSMUSG00000074934 +query_1 FALSE 1 696 17 1 0.0588235294117647 0.0014367816091954 GO:0044297 GO:CC cell body 55341 2333 GO:0044464 IDA ISO ENSMUSG00000048000 +query_1 FALSE 1 104 11 1 0.0909090909090909 0.00961538461538462 GO:0043296 GO:CC apical junction complex 55341 2178 GO:0005911 IDA IBA ENSMUSG00000031871 +query_1 FALSE 1 3767 4 2 0.5 0.000530926466684364 GO:0043233 GO:CC organelle lumen 55341 2159 GO:0044422,GO:0031974 TAS,ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 3356 7 1 0.142857142857143 0.000297973778307509 GO:0043232 GO:CC intracellular non-membrane-bounded organelle 55341 2158 GO:0043228,GO:0043229 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 11657 4 2 0.5 0.000171570730033456 GO:0044424 GO:CC intracellular part 55341 2367 GO:0044464,GO:0005622 TAS,IDA ISO ENSMUSG00000009900,ENSMUSG00000035273 +query_1 FALSE 1 782 17 1 0.0588235294117647 0.00127877237851662 GO:1990904 GO:CC ribonucleoprotein complex 55341 4385 GO:0032991 ISO ENSMUSG00000048000 +query_1 FALSE 1 7 1 1 1 0.142857142857143 GO:1990909 GO:CC Wnt signalosome 55341 4389 GO:0032991 NAS IC ENSMUSG00000009900 +query_1 FALSE 1 744 7 1 0.142857142857143 0.00134408602150538 GO:0000976 GO:MF transcription regulatory region sequence-specific DNA binding 55341 128 GO:0044212,GO:1990837 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 13 5 1 0.2 0.0769230769230769 GO:1990381 GO:MF ubiquitin-specific protease binding 55341 11999 GO:0002020 ISO ENSMUSG00000039100 +query_1 FALSE 1 184 19 1 0.0526315789473684 0.00543478260869565 GO:1901681 GO:MF sulfur compound binding 55341 11814 GO:0005488 TAS ENSMUSG00000074934 +query_1 FALSE 1 2887 7 1 0.142857142857143 0.000346380325597506 GO:1901363 GO:MF heterocyclic compound binding 55341 11793 GO:0005488 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 331 12 1 0.0833333333333333 0.00302114803625378 GO:0140297 GO:MF DNA-binding transcription factor binding 55341 11774 GO:0008134 ISO IBA ENSMUSG00000028341 +query_1 FALSE 1 993 21 3 0.142857142857143 0.00302114803625378 GO:0140110 GO:MF transcription regulator activity 55341 11752 GO:0003674 IDA,IDA ISO TAS,IDA ENSMUSG00000009900,ENSMUSG00000027168,114142 +query_1 FALSE 1 1712 5 1 0.2 0.00058411214953271 GO:0140096 GO:MF catalytic activity, acting on a protein 55341 11743 GO:0003824 ISO ENSMUSG00000039100 +query_1 FALSE 1 776 7 1 0.142857142857143 0.00128865979381443 GO:1990837 GO:MF sequence-specific double-stranded DNA binding 55341 12081 GO:0003690,GO:0043565 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 1338 19 4 0.210526315789474 0.00298953662182362 GO:0098772 GO:MF molecular function regulator 55341 10536 GO:0003674 IDA ISO,ISS ISO IBA,ISO IBA,IDA IPI ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000074934 +query_1 FALSE 1 771 19 2 0.105263157894737 0.00259403372243839 GO:0097367 GO:MF carbohydrate derivative binding 55341 10444 GO:0005488 ISO,TAS ENSMUSG00000035273,ENSMUSG00000074934 +query_1 FALSE 1 2971 7 1 0.142857142857143 0.000336587007741501 GO:0097159 GO:MF organic cyclic compound binding 55341 10411 GO:0005488 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 23 7 1 0.142857142857143 0.0434782608695652 GO:0071837 GO:MF HMG box domain binding 55341 10134 GO:0019904 IPI ENSMUSG00000027168 +query_1 FALSE 1 742 11 1 0.0909090909090909 0.00134770889487871 GO:0008092 GO:MF cytoskeletal protein binding 55341 1995 GO:0005515 IBA ENSMUSG00000031871 +query_1 FALSE 1 62 2 1 0.5 0.0161290322580645 GO:0008083 GO:MF growth factor activity 55341 1992 GO:0048018 ISS ISO IBA ENSMUSG00000004791 +query_1 FALSE 1 349 19 1 0.0526315789473684 0.00286532951289398 GO:0008047 GO:MF enzyme activator activity 55341 1980 GO:0030234 IDA ENSMUSG00000074934 +query_1 FALSE 1 213 13 1 0.0769230769230769 0.00469483568075117 GO:0008022 GO:MF protein C-terminus binding 55341 1967 GO:0005515 ISO ENSMUSG00000061665 +query_1 FALSE 1 70 11 1 0.0909090909090909 0.0142857142857143 GO:0008013 GO:MF beta-catenin binding 55341 1961 GO:0005515 ISO ENSMUSG00000031871 +query_1 FALSE 1 7958 11 7 0.636363636363636 0.000879617994470973 GO:0005515 GO:MF protein binding 55341 1914 GO:0005488 IDA IPI ISO IBA TAS,ISS ISO IBA,IPI ISO IBA,ISO,ISO,IDA IPI ISO,IPI ISO IBA ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000035273,ENSMUSG00000039100,ENSMUSG00000027168,ENSMUSG00000031871 +query_1 FALSE 1 631 7 1 0.142857142857143 0.00158478605388273 GO:0008134 GO:MF transcription factor binding 55341 2028 GO:0005515 IPI ENSMUSG00000027168 +query_1 FALSE 1 279 11 1 0.0909090909090909 0.003584229390681 GO:0005509 GO:MF calcium ion binding 55341 1912 GO:0046872 IBA ENSMUSG00000031871 +query_1 FALSE 1 921 15 1 0.0666666666666667 0.001085776330076 GO:0005215 GO:MF transporter activity 55341 1745 GO:0003674 IBA ENSMUSG00000017756 +query_1 FALSE 1 13 2 1 0.5 0.0769230769230769 GO:0005172 GO:MF vascular endothelial growth factor receptor binding 55341 1706 GO:0070851,GO:0005126 IBA ENSMUSG00000004791 +query_1 FALSE 1 296 2 1 0.5 0.00337837837837838 GO:0005126 GO:MF cytokine receptor binding 55341 1661 GO:0005102 IBA ENSMUSG00000004791 +query_1 FALSE 1 40 1 1 1 0.025 GO:0005109 GO:MF frizzled binding 55341 1647 GO:0001664 IDA IPI IBA ENSMUSG00000009900 +query_1 FALSE 1 1547 11 4 0.363636363636364 0.00258564964447317 GO:0005102 GO:MF signaling receptor binding 55341 1641 GO:0005515 IDA IPI ISO IBA TAS,ISS ISO IBA,IPI ISO IBA,ISO ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000031871 +query_1 FALSE 1 544 16 1 0.0625 0.00183823529411765 GO:0004930 GO:MF G protein-coupled receptor activity 55341 1499 GO:0004888 IMP ISO IBA ENSMUSG00000021678 +query_1 FALSE 1 10326 9 7 0.777777777777778 0.000677900445477436 GO:0005488 GO:MF binding 55341 1897 GO:0003674 IDA IPI ISO IBA TAS,ISS ISO IBA,IPI ISO IBA,ISO,ISO,IDA IPI ISO,ISO IBA ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000035273,ENSMUSG00000039100,ENSMUSG00000027168,ENSMUSG00000031256 +query_1 FALSE 1 1930 16 1 0.0625 0.000518134715025907 GO:0004888 GO:MF transmembrane signaling receptor activity 55341 1465 GO:0038023 IMP ISO IBA ENSMUSG00000021678 +query_1 FALSE 1 493 15 1 0.0666666666666667 0.00202839756592292 GO:0008324 GO:MF cation transmembrane transporter activity 55341 2135 GO:0015075 IBA ENSMUSG00000017756 +query_1 FALSE 1 687 15 1 0.0666666666666667 0.00145560407569141 GO:0015075 GO:MF ion transmembrane transporter activity 55341 2952 GO:0022857 IBA ENSMUSG00000017756 +query_1 FALSE 1 11 18 1 0.0555555555555556 0.0909090909090909 GO:0015926 GO:MF glucosidase activity 55341 3451 GO:0004553 IBA ENSMUSG00000030036 +query_1 FALSE 1 5 8 1 0.125 0.2 GO:0015925 GO:MF galactosidase activity 55341 3450 GO:0004553 IBA ENSMUSG00000079644 +query_1 FALSE 1 13 20 1 0.05 0.0769230769230769 GO:0015923 GO:MF mannosidase activity 55341 3448 GO:0004553 IDA IBA ENSMUSG00000038886 +query_1 FALSE 1 8 15 1 0.0666666666666667 0.125 GO:0015379 GO:MF potassium:chloride symporter activity 55341 3213 GO:0015377,GO:0015079 IBA ENSMUSG00000017756 +query_1 FALSE 1 15 15 1 0.0666666666666667 0.0666666666666667 GO:0015377 GO:MF cation:chloride symporter activity 55341 3211 GO:0015296,GO:0015108 IBA ENSMUSG00000017756 +query_1 FALSE 1 642 15 1 0.0666666666666667 0.00155763239875389 GO:0015318 GO:MF inorganic molecular entity transmembrane transporter activity 55341 3161 GO:0022857 IBA ENSMUSG00000017756 +query_1 FALSE 1 268 15 1 0.0666666666666667 0.00373134328358209 GO:0008509 GO:MF anion transmembrane transporter activity 55341 2262 GO:0015075 IBA ENSMUSG00000017756 +query_1 FALSE 1 16 15 1 0.0666666666666667 0.0625 GO:0015296 GO:MF anion:cation symporter activity 55341 3141 GO:0015294,GO:0015103 IBA ENSMUSG00000017756 +query_1 FALSE 1 77 15 1 0.0666666666666667 0.012987012987013 GO:0015293 GO:MF symporter activity 55341 3138 GO:0015291 IBA ENSMUSG00000017756 +query_1 FALSE 1 147 15 1 0.0666666666666667 0.00680272108843537 GO:0015291 GO:MF secondary active transmembrane transporter activity 55341 3136 GO:0022804 IBA ENSMUSG00000017756 +query_1 FALSE 1 77 15 1 0.0666666666666667 0.012987012987013 GO:0015108 GO:MF chloride transmembrane transporter activity 55341 2981 GO:0015103 IBA ENSMUSG00000017756 +query_1 FALSE 1 104 15 1 0.0666666666666667 0.00961538461538462 GO:0015103 GO:MF inorganic anion transmembrane transporter activity 55341 2976 GO:0015318,GO:0008509 IBA ENSMUSG00000017756 +query_1 FALSE 1 130 15 1 0.0666666666666667 0.00769230769230769 GO:0015079 GO:MF potassium ion transmembrane transporter activity 55341 2956 GO:0015077,GO:0046873 IBA ENSMUSG00000017756 +query_1 FALSE 1 277 15 1 0.0666666666666667 0.0036101083032491 GO:0015077 GO:MF monovalent inorganic cation transmembrane transporter activity 55341 2954 GO:0022890 IBA ENSMUSG00000017756 +query_1 FALSE 1 76 15 1 0.0666666666666667 0.0131578947368421 GO:0015294 GO:MF solute:cation symporter activity 55341 3139 GO:0022890,GO:0015293 IBA ENSMUSG00000017756 +query_1 FALSE 1 60 14 1 0.0714285714285714 0.0166666666666667 GO:0016209 GO:MF antioxidant activity 55341 3511 GO:0003674 ISS ISO ENSMUSG00000047719 +query_1 FALSE 1 353 5 1 0.2 0.0028328611898017 GO:0004842 GO:MF ubiquitin-protein transferase activity 55341 1429 GO:0019787 ISO ENSMUSG00000039100 +query_1 FALSE 1 1 18 1 0.0555555555555556 1 GO:0004573 GO:MF mannosyl-oligosaccharide glucosidase activity 55341 1187 GO:0015926 IBA ENSMUSG00000030036 +query_1 FALSE 1 151 7 1 0.142857142857143 0.00662251655629139 GO:0001228 GO:MF DNA-binding transcription activator activity, RNA polymerase II-specific 55341 262 GO:0000981,GO:0001216 IDA ENSMUSG00000027168 +query_1 FALSE 1 93 7 1 0.142857142857143 0.010752688172043 GO:0001227 GO:MF DNA-binding transcription repressor activity, RNA polymerase II-specific 55341 261 GO:0000981 IDA ENSMUSG00000027168 +query_1 FALSE 1 17 12 1 0.0833333333333333 0.0588235294117647 GO:0001223 GO:MF transcription coactivator binding 55341 257 GO:0001221 IPI ENSMUSG00000028341 +query_1 FALSE 1 43 12 1 0.0833333333333333 0.0232558139534884 GO:0001221 GO:MF transcription cofactor binding 55341 255 GO:0008134 IPI ENSMUSG00000028341 +query_1 FALSE 1 151 7 1 0.142857142857143 0.00662251655629139 GO:0001216 GO:MF DNA-binding transcription activator activity 55341 253 GO:0003700 IDA ENSMUSG00000027168 +query_1 FALSE 1 846 7 1 0.142857142857143 0.00118203309692671 GO:0001067 GO:MF regulatory region nucleic acid binding 55341 191 GO:0003676 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 274 1 1 1 0.00364963503649635 GO:0001664 GO:MF G protein-coupled receptor binding 55341 328 GO:0005102 IDA IPI IBA ENSMUSG00000009900 +query_1 FALSE 1 44 7 1 0.142857142857143 0.0227272727272727 GO:0001047 GO:MF core promoter binding 55341 174 GO:0044212 IDA ENSMUSG00000027168 +query_1 FALSE 1 714 7 1 0.142857142857143 0.00140056022408964 GO:0001012 GO:MF RNA polymerase II regulatory region DNA binding 55341 155 GO:0044212 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 504 7 1 0.142857142857143 0.00198412698412698 GO:0000987 GO:MF proximal promoter sequence-specific DNA binding 55341 137 GO:0000976 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 416 7 1 0.142857142857143 0.00240384615384615 GO:0000981 GO:MF DNA-binding transcription factor activity, RNA polymerase II-specific 55341 133 GO:0003700 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 22 7 1 0.142857142857143 0.0454545454545455 GO:0000979 GO:MF RNA polymerase II core promoter sequence-specific DNA binding 55341 131 GO:0000977,GO:0001046 IDA ENSMUSG00000027168 +query_1 FALSE 1 494 7 1 0.142857142857143 0.00202429149797571 GO:0000978 GO:MF RNA polymerase II proximal promoter sequence-specific DNA binding 55341 130 GO:0000987,GO:0000977 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 708 7 1 0.142857142857143 0.00141242937853107 GO:0000977 GO:MF RNA polymerase II regulatory region sequence-specific DNA binding 55341 129 GO:0000976,GO:0001012 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 34 7 1 0.142857142857143 0.0294117647058824 GO:0001046 GO:MF core promoter sequence-specific DNA binding 55341 173 GO:0001047,GO:0000976 IDA ENSMUSG00000027168 +query_1 FALSE 1 13 14 1 0.0714285714285714 0.0769230769230769 GO:0004659 GO:MF prenyltransferase activity 55341 1269 GO:0016765 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 30 16 1 0.0625 0.0333333333333333 GO:0001965 GO:MF G-protein alpha-subunit binding 55341 382 GO:0005515 IDA ENSMUSG00000021678 +query_1 FALSE 1 18164 7 6 0.857142857142857 0.000330323717242898 GO:0003674 GO:MF molecular_function 55341 419 IDA IPI ISO IBA TAS,ISS ISO IBA,IPI ISO IBA,ISS ISO,ISO,IDA IPI ISO TAS ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000035273,ENSMUSG00000039100,ENSMUSG00000027168 +query_1 FALSE 1 4 8 1 0.125 0.25 GO:0004565 GO:MF beta-galactosidase activity 55341 1180 GO:0015925 IBA ENSMUSG00000079644 +query_1 FALSE 1 13 20 1 0.05 0.0769230769230769 GO:0004559 GO:MF alpha-mannosidase activity 55341 1175 GO:0015923 IBA ENSMUSG00000038886 +query_1 FALSE 1 75 4 1 0.25 0.0133333333333333 GO:0004553 GO:MF hydrolase activity, hydrolyzing O-glycosyl compounds 55341 1170 GO:0016798 ISS ISO ENSMUSG00000035273 +query_1 FALSE 1 4423 4 1 0.25 0.000226090888537192 GO:0003824 GO:MF catalytic activity 55341 533 GO:0003674 ISS ISO ENSMUSG00000035273 +query_1 FALSE 1 298 9 1 0.111111111111111 0.00335570469798658 GO:0003729 GO:MF mRNA binding 55341 464 GO:0003723 IBA ENSMUSG00000031256 +query_1 FALSE 1 795 9 1 0.111111111111111 0.00125786163522013 GO:0003723 GO:MF RNA binding 55341 459 GO:0003676 ISO IBA ENSMUSG00000031256 +query_1 FALSE 1 125 5 1 0.2 0.008 GO:0002020 GO:MF protease binding 55341 385 GO:0019899 ISO ENSMUSG00000039100 +query_1 FALSE 1 237 1 1 1 0.00421940928270042 GO:0003713 GO:MF transcription coactivator activity 55341 450 GO:0003712 IDA ENSMUSG00000009900 +query_1 FALSE 1 704 7 1 0.142857142857143 0.00142045454545455 GO:0003700 GO:MF DNA-binding transcription factor activity 55341 441 GO:0140110 IDA ISO TAS ENSMUSG00000027168 +query_1 FALSE 1 846 7 1 0.142857142857143 0.00118203309692671 GO:0003690 GO:MF double-stranded DNA binding 55341 433 GO:0003677 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 505 7 1 0.142857142857143 0.00198019801980198 GO:0003682 GO:MF chromatin binding 55341 425 GO:0005488 IDA ENSMUSG00000027168 +query_1 FALSE 1 10 7 1 0.142857142857143 0.1 GO:0003680 GO:MF AT DNA binding 55341 423 GO:1990837 ISO ENSMUSG00000027168 +query_1 FALSE 1 1430 7 1 0.142857142857143 0.000699300699300699 GO:0003677 GO:MF DNA binding 55341 421 GO:0003676 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 2137 7 1 0.142857142857143 0.000467945718296678 GO:0003676 GO:MF nucleic acid binding 55341 420 GO:1901363,GO:0097159 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 394 1 1 1 0.00253807106598985 GO:0003712 GO:MF transcription coregulator activity 55341 449 GO:0140110 IDA ENSMUSG00000009900 +query_1 FALSE 1 1809 5 1 0.2 0.000552791597567717 GO:0016740 GO:MF transferase activity 55341 3776 GO:0003824 ISO ENSMUSG00000039100 +query_1 FALSE 1 58 14 1 0.0714285714285714 0.0172413793103448 GO:0016765 GO:MF transferase activity, transferring alkyl or aryl (other than methyl) groups 55341 3800 GO:0016740 ISS ISO IBA ENSMUSG00000047719 +query_1 FALSE 1 1837 4 1 0.25 0.000544365813826892 GO:0016787 GO:MF hydrolase activity 55341 3819 GO:0003824 ISS ISO ENSMUSG00000035273 +query_1 FALSE 1 293 7 1 0.142857142857143 0.00341296928327645 GO:0044389 GO:MF ubiquitin-like protein ligase binding 55341 7195 GO:0019899 IPI ENSMUSG00000027168 +query_1 FALSE 1 128 11 1 0.0909090909090909 0.0078125 GO:0044325 GO:MF ion channel binding 55341 7189 GO:0005515 ISO ENSMUSG00000031871 +query_1 FALSE 1 843 7 1 0.142857142857143 0.00118623962040332 GO:0044212 GO:MF transcription regulatory region DNA binding 55341 7185 GO:0001067,GO:0003677 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 953 7 1 0.142857142857143 0.00104931794333683 GO:0043565 GO:MF sequence-specific DNA binding 55341 6957 GO:0003677 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 16 19 1 0.0526315789473684 0.0625 GO:0043395 GO:MF heparan sulfate proteoglycan binding 55341 6925 GO:1901681,GO:0043394,GO:0043168 TAS ENSMUSG00000074934 +query_1 FALSE 1 32 4 1 0.25 0.03125 GO:0043394 GO:MF proteoglycan binding 55341 6924 GO:0097367,GO:0005515 ISO ENSMUSG00000035273 +query_1 FALSE 1 38 5 1 0.2 0.0263157894736842 GO:0044390 GO:MF ubiquitin-like protein conjugating enzyme binding 55341 7196 GO:0019899 ISO ENSMUSG00000039100 +query_1 FALSE 1 5 2 1 0.5 0.2 GO:0043185 GO:MF vascular endothelial growth factor receptor 3 binding 55341 6897 GO:0005172 IBA ENSMUSG00000004791 +query_1 FALSE 1 832 11 1 0.0909090909090909 0.00120192307692308 GO:0043169 GO:MF cation binding 55341 6890 GO:0043167 IBA ENSMUSG00000031871 +query_1 FALSE 1 1232 19 1 0.0526315789473684 0.000811688311688312 GO:0043168 GO:MF anion binding 55341 6889 GO:0043167 TAS ENSMUSG00000074934 +query_1 FALSE 1 1783 11 1 0.0909090909090909 0.000560852495793606 GO:0043167 GO:MF ion binding 55341 6888 GO:0005488 IBA ENSMUSG00000031871 +query_1 FALSE 1 846 11 2 0.181818181818182 0.00236406619385343 GO:0042803 GO:MF protein homodimerization activity 55341 6800 GO:0046983,GO:0042802 ISO,IBA ENSMUSG00000004791,ENSMUSG00000031871 +query_1 FALSE 1 1720 11 2 0.181818181818182 0.00116279069767442 GO:0042802 GO:MF identical protein binding 55341 6799 GO:0005515 ISO,IBA ENSMUSG00000004791,ENSMUSG00000031871 +query_1 FALSE 1 37 2 1 0.5 0.027027027027027 GO:0042056 GO:MF chemoattractant activity 55341 6697 GO:0048018 IBA ENSMUSG00000004791 +query_1 FALSE 1 6 19 1 0.0526315789473684 0.166666666666667 GO:0043184 GO:MF vascular endothelial growth factor receptor 2 binding 55341 6896 GO:0005172 IPI ENSMUSG00000074934 +query_1 FALSE 1 11 1 1 1 0.0909090909090909 GO:0039706 GO:MF co-receptor binding 55341 6675 GO:0005515 ISO ENSMUSG00000009900 +query_1 FALSE 1 1028 13 1 0.0769230769230769 0.000972762645914397 GO:0044877 GO:MF protein-containing complex binding 55341 7253 GO:0005488 ISO ENSMUSG00000061665 +query_1 FALSE 1 7 4 1 0.25 0.142857142857143 GO:0045545 GO:MF syndecan binding 55341 7357 GO:0043394 ISO ENSMUSG00000035273 +query_1 FALSE 1 123 2 1 0.5 0.00813008130081301 GO:0070851 GO:MF growth factor receptor binding 55341 10064 GO:0005102 IBA ENSMUSG00000004791 +query_1 FALSE 1 21 7 1 0.142857142857143 0.0476190476190476 GO:0070412 GO:MF R-SMAD binding 55341 9989 GO:0046332 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 9 7 1 0.142857142857143 0.111111111111111 GO:0070410 GO:MF co-SMAD binding 55341 9987 GO:0046332 IDA ENSMUSG00000027168 +query_1 FALSE 1 20 17 1 0.0588235294117647 0.05 GO:0070064 GO:MF proline-rich region binding 55341 9932 GO:0005515 ISO ENSMUSG00000048000 +query_1 FALSE 1 262 12 1 0.0833333333333333 0.00381679389312977 GO:0061629 GO:MF RNA polymerase II-specific DNA-binding transcription factor binding 55341 9778 GO:0140297 ISO IBA ENSMUSG00000028341 +query_1 FALSE 1 2114 16 1 0.0625 0.000473036896877956 GO:0060089 GO:MF molecular transducer activity 55341 9725 GO:0003674 IMP ISO IBA ENSMUSG00000021678 +query_1 FALSE 1 53 11 1 0.0909090909090909 0.0188679245283019 GO:0045296 GO:MF cadherin binding 55341 7301 GO:0050839 IBA ENSMUSG00000031871 +query_1 FALSE 1 160 12 1 0.0833333333333333 0.00625 GO:0051427 GO:MF hormone receptor binding 55341 9290 GO:0005102 ISO IBA ENSMUSG00000028341 +query_1 FALSE 1 350 19 4 0.210526315789474 0.0114285714285714 GO:0048018 GO:MF receptor ligand activity 55341 8498 GO:0005102,GO:0030545 IDA ISO,ISS ISO IBA,ISO IBA,IPI ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000074934 +query_1 FALSE 1 1132 2 1 0.5 0.00088339222614841 GO:0046983 GO:MF protein dimerization activity 55341 7500 GO:0005515 ISO ENSMUSG00000004791 +query_1 FALSE 1 454 21 2 0.0952380952380952 0.00440528634361234 GO:0046982 GO:MF protein heterodimerization activity 55341 7499 GO:0046983 ISO,IPI ENSMUSG00000004791,114142 +query_1 FALSE 1 345 15 1 0.0666666666666667 0.00289855072463768 GO:0046873 GO:MF metal ion transmembrane transporter activity 55341 7457 GO:0022890 IBA ENSMUSG00000017756 +query_1 FALSE 1 733 11 1 0.0909090909090909 0.00136425648021828 GO:0046872 GO:MF metal ion binding 55341 7456 GO:0043169 IBA ENSMUSG00000031871 +query_1 FALSE 1 72 7 1 0.142857142857143 0.0138888888888889 GO:0046332 GO:MF SMAD binding 55341 7374 GO:0005515 IDA ISO ENSMUSG00000027168 +query_1 FALSE 1 203 11 1 0.0909090909090909 0.00492610837438424 GO:0050839 GO:MF cell adhesion molecule binding 55341 9210 GO:0005515 IBA ENSMUSG00000031871 +query_1 FALSE 1 2071 16 1 0.0625 0.000482858522452921 GO:0038023 GO:MF signaling receptor activity 55341 6614 GO:0060089 IMP ISO IBA ENSMUSG00000021678 +query_1 FALSE 1 11 19 1 0.0526315789473684 0.0909090909090909 GO:0036122 GO:MF BMP binding 55341 6496 GO:0019955 ISS ISO ENSMUSG00000074934 +query_1 FALSE 1 8 12 1 0.0833333333333333 0.125 GO:0035497 GO:MF cAMP response element binding 55341 6418 GO:0000978 IDA ENSMUSG00000028341 +query_1 FALSE 1 699 7 2 0.285714285714286 0.00286123032904149 GO:0019904 GO:MF protein domain specific binding 55341 4695 GO:0005515 IPI,IPI ENSMUSG00000009900,ENSMUSG00000027168 +query_1 FALSE 1 141 11 1 0.0909090909090909 0.00709219858156028 GO:0019903 GO:MF protein phosphatase binding 55341 4694 GO:0019902 IPI ENSMUSG00000031871 +query_1 FALSE 1 179 11 1 0.0909090909090909 0.00558659217877095 GO:0019902 GO:MF phosphatase binding 55341 4693 GO:0019899 IPI ENSMUSG00000031871 +query_1 FALSE 1 665 7 1 0.142857142857143 0.00150375939849624 GO:0019901 GO:MF protein kinase binding 55341 4692 GO:0019900 IPI ENSMUSG00000027168 +query_1 FALSE 1 739 7 1 0.142857142857143 0.0013531799729364 GO:0019900 GO:MF kinase binding 55341 4691 GO:0019899 IPI ENSMUSG00000027168 +query_1 FALSE 1 2044 5 1 0.2 0.000489236790606654 GO:0019899 GO:MF enzyme binding 55341 4690 GO:0005515 ISO ENSMUSG00000039100 +query_1 FALSE 1 117 19 1 0.0526315789473684 0.00854700854700855 GO:0019955 GO:MF cytokine binding 55341 4702 GO:0005515 ISS ISO ENSMUSG00000074934 +query_1 FALSE 1 142 19 1 0.0526315789473684 0.00704225352112676 GO:0019887 GO:MF protein kinase regulator activity 55341 4685 GO:0019207 IDA ENSMUSG00000074934 +query_1 FALSE 1 72 19 1 0.0526315789473684 0.0138888888888889 GO:0019209 GO:MF kinase activator activity 55341 4601 GO:0008047,GO:0019207 IDA ENSMUSG00000074934 +query_1 FALSE 1 174 19 1 0.0526315789473684 0.00574712643678161 GO:0019207 GO:MF kinase regulator activity 55341 4599 GO:0030234 IDA ENSMUSG00000074934 +query_1 FALSE 1 81 13 1 0.0769230769230769 0.0123456790123457 GO:0017124 GO:MF SH3 domain binding 55341 4056 GO:0019904 ISO ENSMUSG00000061665 +query_1 FALSE 1 104 12 1 0.0833333333333333 0.00961538461538462 GO:0016922 GO:MF nuclear receptor binding 55341 3945 GO:0035257 ISO IBA ENSMUSG00000028341 +query_1 FALSE 1 17 20 1 0.05 0.0588235294117647 GO:0016799 GO:MF hydrolase activity, hydrolyzing N-glycosyl compounds 55341 3829 GO:0016798 IDA ENSMUSG00000038886 +query_1 FALSE 1 93 4 1 0.25 0.010752688172043 GO:0016798 GO:MF hydrolase activity, acting on glycosyl bonds 55341 3828 GO:0016787 ISS ISO ENSMUSG00000035273 +query_1 FALSE 1 373 5 1 0.2 0.00268096514745308 GO:0019787 GO:MF ubiquitin-like protein transferase activity 55341 4642 GO:0016740,GO:0140096 ISO ENSMUSG00000039100 +query_1 FALSE 1 243 15 1 0.0666666666666667 0.00411522633744856 GO:0022804 GO:MF active transmembrane transporter activity 55341 4729 GO:0022857 IBA ENSMUSG00000017756 +query_1 FALSE 1 794 15 1 0.0666666666666667 0.00125944584382872 GO:0022857 GO:MF transmembrane transporter activity 55341 4760 GO:0005215 IBA ENSMUSG00000017756 +query_1 FALSE 1 452 15 1 0.0666666666666667 0.00221238938053097 GO:0022890 GO:MF inorganic cation transmembrane transporter activity 55341 4785 GO:0008324,GO:0015318 IBA ENSMUSG00000017756 +query_1 FALSE 1 19 12 1 0.0833333333333333 0.0526315789473684 GO:0035259 GO:MF glucocorticoid receptor binding 55341 6380 GO:0035258,GO:0016922 ISO IBA ENSMUSG00000028341 +query_1 FALSE 1 78 12 1 0.0833333333333333 0.0128205128205128 GO:0035258 GO:MF steroid hormone receptor binding 55341 6379 GO:0035257 ISO IBA ENSMUSG00000028341 +query_1 FALSE 1 137 12 1 0.0833333333333333 0.0072992700729927 GO:0035257 GO:MF nuclear hormone receptor binding 55341 6378 GO:0051427,GO:0061629 ISO IBA ENSMUSG00000028341 +query_1 FALSE 1 32 7 1 0.142857142857143 0.03125 GO:0035035 GO:MF histone acetyltransferase binding 55341 6352 GO:0019899 IDA ENSMUSG00000027168 +query_1 FALSE 1 6 16 1 0.0625 0.166666666666667 GO:0032795 GO:MF heterotrimeric G-protein binding 55341 5512 GO:0044877 TAS ENSMUSG00000021678 +query_1 FALSE 1 15 16 1 0.0625 0.0666666666666667 GO:0031681 GO:MF G-protein beta-subunit binding 55341 5181 GO:0005515 IDA ENSMUSG00000021678 +query_1 FALSE 1 281 7 1 0.142857142857143 0.00355871886120996 GO:0031625 GO:MF ubiquitin protein ligase binding 55341 5176 GO:0044389 IPI ENSMUSG00000027168 +query_1 FALSE 1 32 5 1 0.2 0.03125 GO:0031624 GO:MF ubiquitin conjugating enzyme binding 55341 5175 GO:0044390 ISO ENSMUSG00000039100 +query_1 FALSE 1 8 19 1 0.0526315789473684 0.125 GO:0030546 GO:MF receptor activator activity 55341 4952 GO:0030545 IDA ENSMUSG00000074934 +query_1 FALSE 1 384 19 4 0.210526315789474 0.0104166666666667 GO:0030545 GO:MF receptor regulator activity 55341 4951 GO:0098772 IDA ISO,ISS ISO IBA,ISO IBA,IDA IPI ENSMUSG00000009900,ENSMUSG00000004791,ENSMUSG00000031520,ENSMUSG00000074934 +query_1 FALSE 1 1 4 1 0.25 1 GO:0030305 GO:MF heparanase activity 55341 4880 GO:0004553 ISS ISO ENSMUSG00000035273 +query_1 FALSE 1 4 19 1 0.0526315789473684 0.25 GO:0030297 GO:MF transmembrane receptor protein tyrosine kinase activator activity 55341 4876 GO:0030296,GO:0030546 IDA ENSMUSG00000074934 +query_1 FALSE 1 16 19 1 0.0526315789473684 0.0625 GO:0030296 GO:MF protein tyrosine kinase activator activity 55341 4875 GO:0030295 IDA ENSMUSG00000074934 +query_1 FALSE 1 65 19 1 0.0526315789473684 0.0153846153846154 GO:0030295 GO:MF protein kinase activator activity 55341 4874 GO:0019887,GO:0019209 IDA ENSMUSG00000074934 +query_1 FALSE 1 757 19 1 0.0526315789473684 0.00132100396301189 GO:0030234 GO:MF enzyme regulator activity 55341 4846 GO:0098772 IDA ENSMUSG00000074934
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_orth_results.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,33 @@ +input_number input input_ensg ensg_number ortholog_name ortholog_ensg description +4 ENSG00000156103 ENSG00000156103 4.1.1 Mmp16 ENSMUSG00000028226 matrix metallopeptidase 16 [Source:MGI Symbol;Acc:MGI:1276107] +3 GO:0005005 ENSG00000044524 3.1.1 Epha3 ENSMUSG00000052504 Eph receptor A3 [Source:MGI Symbol;Acc:MGI:99612] +3 GO:0005005 ENSG00000070886 3.2.1 Epha8 ENSMUSG00000028661 Eph receptor A8 [Source:MGI Symbol;Acc:MGI:109378] +3 GO:0005005 ENSG00000080224 3.3.1 Epha6 ENSMUSG00000055540 Eph receptor A6 [Source:MGI Symbol;Acc:MGI:108034] +3 GO:0005005 ENSG00000108947 3.4.1 Efnb3 ENSMUSG00000003934 ephrin B3 [Source:MGI Symbol;Acc:MGI:109196] +3 GO:0005005 ENSG00000116106 3.5.1 Epha4 ENSMUSG00000026235 Eph receptor A4 [Source:MGI Symbol;Acc:MGI:98277] +3 GO:0005005 ENSG00000133216 3.6.1 Ephb2 ENSMUSG00000028664 Eph receptor B2 [Source:MGI Symbol;Acc:MGI:99611] +3 GO:0005005 ENSG00000135333 3.7.1 Epha7 ENSMUSG00000028289 Eph receptor A7 [Source:MGI Symbol;Acc:MGI:95276] +3 GO:0005005 ENSG00000142627 3.8.1 Epha2 ENSMUSG00000006445 Eph receptor A2 [Source:MGI Symbol;Acc:MGI:95278] +3 GO:0005005 ENSG00000143590 3.9.1 Efna3 ENSMUSG00000028039 ephrin A3 [Source:MGI Symbol;Acc:MGI:106644] +3 GO:0005005 ENSG00000145242 3.10.1 Epha5 ENSMUSG00000029245 Eph receptor A5 [Source:MGI Symbol;Acc:MGI:99654] +3 GO:0005005 ENSG00000146904 3.11.1 Epha1 ENSMUSG00000029859 Eph receptor A1 [Source:MGI Symbol;Acc:MGI:107381] +3 GO:0005005 ENSG00000154928 3.12.1 Ephb1 ENSMUSG00000032537 Eph receptor B1 [Source:MGI Symbol;Acc:MGI:1096337] +3 GO:0005005 ENSG00000182580 3.13.1 Ephb3 ENSMUSG00000005958 Eph receptor B3 [Source:MGI Symbol;Acc:MGI:104770] +3 GO:0005005 ENSG00000183317 3.14.1 Epha10 ENSMUSG00000028876 Eph receptor A10 [Source:MGI Symbol;Acc:MGI:3586824] +3 GO:0005005 ENSG00000196411 3.15.1 Ephb4 ENSMUSG00000029710 Eph receptor B4 [Source:MGI Symbol;Acc:MGI:104757] +3 GO:0005005 ENSG00000243364 3.16.1 Efna4 ENSMUSG00000028040 ephrin A4 [Source:MGI Symbol;Acc:MGI:106643] +5 NLRP1 ENSG00000091592 5.1.1 Nlrp1a ENSMUSG00000069830 NLR family, pyrin domain containing 1A [Source:MGI Symbol;Acc:MGI:2684861] +5 NLRP1 ENSG00000091592 5.1.2 Nlrp1b ENSMUSG00000070390 NLR family, pyrin domain containing 1B [Source:MGI Symbol;Acc:MGI:3582959] +2 rs17396340 ENSG00000054523 2.1.1 Kif1b ENSMUSG00000063077 kinesin family member 1B [Source:MGI Symbol;Acc:MGI:108426] +1 X:1000:1000000 ENSG00000167393 1.1.1 N/A N/A N/A +1 X:1000:1000000 ENSG00000178605 1.2.1 Gtpbp6 ENSMUSG00000033434 GTP binding protein 6 (putative) [Source:MGI Symbol;Acc:MGI:1306825] +1 X:1000:1000000 ENSG00000182378 1.3.1 Plcxd1 ENSMUSG00000064247 phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:MGI Symbol;Acc:MGI:2685422] +1 X:1000:1000000 ENSG00000185960 1.4.1 Rhox10 ENSMUSG00000053909 reproductive homeobox 10 [Source:MGI Symbol;Acc:MGI:3580249] +1 X:1000:1000000 ENSG00000226179 1.5.1 N/A N/A N/A +1 X:1000:1000000 ENSG00000228572 1.6.1 N/A N/A N/A +1 X:1000:1000000 ENSG00000229232 1.7.1 N/A N/A N/A +1 X:1000:1000000 ENSG00000234958 1.8.1 N/A N/A N/A +1 X:1000:1000000 ENSG00000237531 1.9.1 N/A N/A N/A +1 X:1000:1000000 ENSG00000275287 1.10.1 N/A N/A N/A +1 X:1000:1000000 ENSG00000280767 1.11.1 N/A N/A N/A +1 X:1000:1000000 ENSG00000281849 1.12.1 N/A N/A N/A
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_orth_results_2.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,22 @@ +input_number input input_ensg ensg_number ortholog_name ortholog_ensg description +21 114142 ENSMUSG00000029563 21.1.1 FOXP2 ENSG00000128573 forkhead box P2 [Source:HGNC Symbol;Acc:HGNC:13875] +2 ENSMUSG00000004791 ENSMUSG00000004791 2.1.1 PGF ENSG00000119630 placental growth factor [Source:HGNC Symbol;Acc:HGNC:8893] +1 ENSMUSG00000009900 ENSMUSG00000009900 1.1.1 WNT3A ENSG00000154342 Wnt family member 3A [Source:HGNC Symbol;Acc:HGNC:15983] +15 ENSMUSG00000017756 ENSMUSG00000017756 15.1.1 SLC12A7 ENSG00000113504 solute carrier family 12 member 7 [Source:HGNC Symbol;Acc:HGNC:10915] +16 ENSMUSG00000021678 ENSMUSG00000021678 16.1.1 F2RL1 ENSG00000164251 F2R like trypsin receptor 1 [Source:HGNC Symbol;Acc:HGNC:3538] +7 ENSMUSG00000027168 ENSMUSG00000027168 7.1.1 PAX6 ENSG00000007372 paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620] +10 ENSMUSG00000028164 ENSMUSG00000028164 10.1.1 MANBA ENSG00000109323 mannosidase beta [Source:HGNC Symbol;Acc:HGNC:6831] +12 ENSMUSG00000028341 ENSMUSG00000028341 12.1.1 NR4A3 ENSG00000119508 nuclear receptor subfamily 4 group A member 3 [Source:HGNC Symbol;Acc:HGNC:7982] +6 ENSMUSG00000029909 ENSMUSG00000029909 6.1.1 PRSS37 ENSG00000165076 serine protease 37 [Source:HGNC Symbol;Acc:HGNC:29211] +18 ENSMUSG00000030036 ENSMUSG00000030036 18.1.1 MOGS ENSG00000115275 mannosyl-oligosaccharide glucosidase [Source:HGNC Symbol;Acc:HGNC:24862] +9 ENSMUSG00000031256 ENSMUSG00000031256 9.1.1 CSTF2 ENSG00000101811 cleavage stimulation factor subunit 2 [Source:HGNC Symbol;Acc:HGNC:2484] +3 ENSMUSG00000031520 ENSMUSG00000031520 3.1.1 VEGFC ENSG00000150630 vascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682] +11 ENSMUSG00000031871 ENSMUSG00000031871 11.1.1 CDH5 ENSG00000179776 cadherin 5 [Source:HGNC Symbol;Acc:HGNC:1764] +4 ENSMUSG00000035273 ENSMUSG00000035273 4.1.1 HPSE ENSG00000173083 heparanase [Source:HGNC Symbol;Acc:HGNC:5164] +20 ENSMUSG00000038886 ENSMUSG00000038886 20.1.1 MAN2A2 ENSG00000196547 mannosidase alpha class 2A member 2 [Source:HGNC Symbol;Acc:HGNC:6825] +5 ENSMUSG00000039100 ENSMUSG00000039100 5.1.1 MARCH6 ENSG00000145495 membrane associated ring-CH-type finger 6 [Source:HGNC Symbol;Acc:HGNC:30550] +14 ENSMUSG00000047719 ENSMUSG00000047719 14.1.1 UBIAD1 ENSG00000120942 UbiA prenyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30791] +17 ENSMUSG00000048000 ENSMUSG00000048000 17.1.1 GIGYF2 ENSG00000204120 GRB10 interacting GYF protein 2 [Source:HGNC Symbol;Acc:HGNC:11960] +13 ENSMUSG00000061665 ENSMUSG00000061665 13.1.1 CD2AP ENSG00000198087 CD2 associated protein [Source:HGNC Symbol;Acc:HGNC:14258] +19 ENSMUSG00000074934 ENSMUSG00000074934 19.1.1 GREM1 ENSG00000166923 gremlin 1, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:2001] +8 ENSMUSG00000079644 ENSMUSG00000079644 8.1.1 N/A N/A N/A
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_query.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,5 @@ +X:1000:1000000 +rs17396340 +GO:0005005 +ENSG00000156103 +NLRP1 \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_query_2.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,21 @@ +ENSMUSG00000009900 +ENSMUSG00000004791 +ENSMUSG00000031520 +ENSMUSG00000035273 +ENSMUSG00000039100 +ENSMUSG00000029909 +ENSMUSG00000027168 +ENSMUSG00000079644 +ENSMUSG00000031256 +ENSMUSG00000028164 +ENSMUSG00000031871 +ENSMUSG00000028341 +ENSMUSG00000061665 +ENSMUSG00000047719 +ENSMUSG00000017756 +ENSMUSG00000021678 +ENSMUSG00000048000 +ENSMUSG00000030036 +ENSMUSG00000074934 +ENSMUSG00000038886 +114142 \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_snpense_query.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,73 @@ +rs11734132 +rs7961894 +rs4305276 +rs17396340 +rs7616006 +rs944002 +rs7694379 +rs3184504 +rs700585 +rs7641175 +rs11628318 +rs1260326 +rs1558324 +rs342275 +rs2336384 +rs8022206 +rs1354034 +rs10761731 +rs11789898 +rs7075195 +rs2015599 +rs13300663 +rs1172130 +rs11082304 +rs10813766 +rs4246215 +rs1668871 +rs399604 +rs10512627 +rs3731211 +rs2297067 +rs8109288 +rs4148441 +rs397969 +rs4521516 +rs7342306 +rs441460 +rs559972 +rs6993770 +rs1719271 +rs409801 +rs7550918 +rs6065 +rs8006385 +rs17568628 +rs17030845 +rs17356664 +rs3819299 +rs13042885 +rs7317038 +rs10076782 +rs2070729 +rs12969657 +rs3809566 +rs4731120 +rs6995402 +rs625132 +rs16971217 +rs17655730 +rs649729 +rs8076739 +rs3811444 +rs6141 +rs10914144 +rs3000073 +rs9399137 +rs210134 +rs3792366 +rs4938642 +rs2227831 +rs1034566 +rs941207 +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_snpense_results.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,73 @@ +rs_id chromosome start end strand ensgs gene_names 3_prime_UTR_variant NMD_transcript_variant intron_variant missense_variant non_coding_transcript_exon_variant non_coding_transcript_variant splice_region_variant +rs11734132 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs7961894 12 121927677 121927677 + ENSG00000158023 WDR66 0 0 3 0 0 1 0 +rs4305276 2 240555596 240555596 + ENSG00000144504 ANKMY1 0 0 57 0 0 18 0 +rs17396340 1 10226118 10226118 + ENSG00000054523 KIF1B 0 0 8 0 0 0 0 +rs7616006 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs944002 14 103106478 103106478 + ENSG00000205436 EXOC3L4 0 1 3 0 0 1 0 +rs7694379 4 87265357 87265357 + ENSG00000250572 AC108516.1 0 0 1 0 0 1 0 +rs3184504 12 111446804 111446804 + ENSG00000111252,ENSG00000204842 SH2B3,ATXN2 0 3 3 12 0 0 0 +rs700585 5 88856300 88856300 + ENSG00000081189 MEF2C 0 0 44 0 0 6 0 +rs7641175 3 18269920 18269920 + ENSG00000131374 TBC1D5 0 0 1 0 0 1 0 +rs11628318 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs1260326 2 27508073 27508073 + ENSG00000084734 GCKR 0 0 0 2 1 0 3 +rs1558324 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs342275 7 106718770 106718770 + ENSG00000243797 AC004917.1 0 0 2 0 0 2 0 +rs2336384 1 11986006 11986006 + ENSG00000116688 MFN2 0 0 7 0 0 3 0 +rs8022206 14 68054189 68054189 + ENSG00000182185 RAD51B 0 1 14 0 0 9 0 +rs1354034 3 56815721 56815721 + ENSG00000163947 ARHGEF3 0 2 10 0 0 3 0 +rs10761731 10 63267850 63267850 + ENSG00000171988 JMJD1C 0 0 6 0 0 4 0 +rs11789898 9 134060541 134060541 + ENSG00000169925 BRD3 0 0 2 0 0 0 0 +rs7075195 10 63290899 63290899 + ENSG00000171988 JMJD1C 0 0 2 0 0 1 0 +rs2015599 12 29282547 29282547 + ENSG00000064763,ENSG00000257176 FAR2,AC009318.1 0 1 7 0 0 2 0 +rs13300663 9 4814948 4814948 + ENSG00000120158 RCL1 0 0 8 0 0 2 0 +rs1172130 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs11082304 18 23141009 23141009 + ENSG00000134508 CABLES1 0 2 16 0 0 6 0 +rs10813766 9 331490 331490 + ENSG00000107099 DOCK8 0 2 9 0 0 3 0 +rs4246215 11 61796827 61796827 + ENSG00000134824,ENSG00000168496 FADS2,FEN1 2 0 4 0 0 0 0 +rs1668871 1 205268009 205268009 + ENSG00000133069 TMCC2 0 0 18 0 0 8 0 +rs399604 6 33007237 33007237 + ENSG00000204252 HLA-DOA 0 0 2 0 1 1 0 +rs10512627 3 124621375 124621375 + ENSG00000160145 KALRN 0 0 6 0 0 2 0 +rs3731211 9 21986848 21986848 + ENSG00000147889,ENSG00000264545 CDKN2A,AL359922.1 0 1 6 0 0 0 0 +rs2297067 14 103100448 103100448 + ENSG00000205436 EXOC3L4 0 0 0 2 0 0 0 +rs8109288 19 16074749 16074749 + ENSG00000167460,ENSG00000279198 TPM4,AC008894.3 0 0 4 0 1 0 0 +rs4148441 13 95245953 95245953 + ENSG00000125257 ABCC4 0 4 12 0 0 2 0 +rs397969 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs4521516 5 88804134 88804134 + ENSG00000081189 MEF2C 0 0 31 0 0 3 0 +rs7342306 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs441460 6 25548060 25548060 + ENSG00000079691 CARMIL1 0 1 2 0 0 0 0 +rs559972 17 29487478 29487478 + ENSG00000160551 TAOK1 0 0 3 0 0 1 0 +rs6993770 8 105569300 105569300 + ENSG00000169946 ZFPM2 0 0 6 0 0 2 0 +rs1719271 15 64891602 64891602 + ENSG00000249240 AC069368.1 0 0 2 0 0 1 0 +rs409801 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs7550918 1 247512257 247512257 + ENSG00000169224 GCSAML 0 0 6 0 0 0 0 +rs6065 17 4933086 4933086 + ENSG00000185245 GP1BA 0 0 1 2 0 0 0 +rs8006385 14 93034681 93034681 + ENSG00000100605 ITPK1 0 0 11 0 0 3 0 +rs17568628 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs17030845 2 43460740 43460740 + ENSG00000115970 THADA 0 3 8 0 0 2 0 +rs17356664 19 45237513 45237513 + ENSG00000007047,ENSG00000283632 MARK4,EXOC3L2 0 0 2 0 0 0 0 +rs3819299 6 31354590 31354590 + ENSG00000234745 HLA-B 0 0 5 0 1 1 0 +rs13042885 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs7317038 13 113358583 113358583 + ENSG00000139835,ENSG00000225083 GRTP1,GRTP1-AS1 0 0 4 0 0 1 0 +rs10076782 5 159177955 159177955 + ENSG00000145860 RNF145 0 0 7 0 0 0 0 +rs2070729 5 132484229 132484229 + ENSG00000125347,ENSG00000197536,ENSG00000283782 IRF1,C5orf56,AC116366.3 0 0 9 0 1 3 0 +rs12969657 18 69869260 69869260 + ENSG00000150637 CD226 0 1 5 0 0 0 0 +rs3809566 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs4731120 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs6995402 8 143931393 143931393 + ENSG00000178209 PLEC 0 0 10 0 0 0 0 +rs625132 2 31259434 31259434 + ENSG00000013016 EHD3 0 0 1 0 0 0 0 +rs16971217 17 35617036 35617036 + ENSG00000006125 AP2B1 0 1 11 0 0 1 0 +rs17655730 NA NA NA NA NA NA NA NA NA NA NA NA NA +rs649729 2 31241519 31241519 + ENSG00000013016 EHD3 0 0 2 0 0 0 0 +rs8076739 17 29387569 29387569 + ENSG00000264808,ENSG00000266111 AC068025.1,AC068025.2 0 0 2 0 0 2 0 +rs3811444 1 247876149 247876149 + ENSG00000162722 TRIM58 0 0 0 1 0 0 0 +rs6141 3 184372478 184372478 + ENSG00000090534 THPO 12 0 0 0 0 0 0 +rs10914144 1 171980610 171980610 + ENSG00000197959 DNM3 0 0 6 0 0 0 0 +rs3000073 14 105263455 105263455 + ENSG00000185024 BRF1 0 0 8 0 0 0 0 +rs9399137 6 135097880 135097880 + ENSG00000112339 HBS1L 0 0 1 0 0 0 0 +rs210134 6 33572432 33572432 + ENSG00000204188 GGNBP1 0 0 1 0 0 1 0 +rs3792366 3 123121029 123121029 + ENSG00000065485 PDIA5 0 2 4 0 0 0 0 +rs4938642 11 119229196 119229196 + ENSG00000110395 CBL 0 0 5 0 0 0 0 +rs2227831 5 76727669 76727669 + ENSG00000181104 F2R 0 0 1 0 0 0 0 +rs1034566 22 19996754 19996754 + ENSG00000099889 ARVCF 0 0 4 0 0 2 0 +rs941207 12 56629500 56629500 + ENSG00000076108 BAZ2A 0 0 7 0 0 2 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/example_snpense_results_2.txt Thu Nov 14 06:01:29 2019 -0500 @@ -0,0 +1,60 @@ +rs_id chromosome start end strand ensgs gene_names 3_prime_UTR_variant NMD_transcript_variant intron_variant missense_variant non_coding_transcript_exon_variant non_coding_transcript_variant splice_region_variant +rs7961894 12 121927677 121927677 + ENSG00000158023 WDR66 0 0 3 0 0 1 0 +rs4305276 2 240555596 240555596 + ENSG00000144504 ANKMY1 0 0 57 0 0 18 0 +rs17396340 1 10226118 10226118 + ENSG00000054523 KIF1B 0 0 8 0 0 0 0 +rs944002 14 103106478 103106478 + ENSG00000205436 EXOC3L4 0 1 3 0 0 1 0 +rs7694379 4 87265357 87265357 + ENSG00000250572 AC108516.1 0 0 1 0 0 1 0 +rs3184504 12 111446804 111446804 + ENSG00000111252,ENSG00000204842 SH2B3,ATXN2 0 3 3 12 0 0 0 +rs700585 5 88856300 88856300 + ENSG00000081189 MEF2C 0 0 44 0 0 6 0 +rs7641175 3 18269920 18269920 + ENSG00000131374 TBC1D5 0 0 1 0 0 1 0 +rs1260326 2 27508073 27508073 + ENSG00000084734 GCKR 0 0 0 2 1 0 3 +rs342275 7 106718770 106718770 + ENSG00000243797 AC004917.1 0 0 2 0 0 2 0 +rs2336384 1 11986006 11986006 + ENSG00000116688 MFN2 0 0 7 0 0 3 0 +rs8022206 14 68054189 68054189 + ENSG00000182185 RAD51B 0 1 14 0 0 9 0 +rs1354034 3 56815721 56815721 + ENSG00000163947 ARHGEF3 0 2 10 0 0 3 0 +rs10761731 10 63267850 63267850 + ENSG00000171988 JMJD1C 0 0 6 0 0 4 0 +rs11789898 9 134060541 134060541 + ENSG00000169925 BRD3 0 0 2 0 0 0 0 +rs7075195 10 63290899 63290899 + ENSG00000171988 JMJD1C 0 0 2 0 0 1 0 +rs2015599 12 29282547 29282547 + ENSG00000064763,ENSG00000257176 FAR2,AC009318.1 0 1 7 0 0 2 0 +rs13300663 9 4814948 4814948 + ENSG00000120158 RCL1 0 0 8 0 0 2 0 +rs11082304 18 23141009 23141009 + ENSG00000134508 CABLES1 0 2 16 0 0 6 0 +rs10813766 9 331490 331490 + ENSG00000107099 DOCK8 0 2 9 0 0 3 0 +rs4246215 11 61796827 61796827 + ENSG00000134824,ENSG00000168496 FADS2,FEN1 2 0 4 0 0 0 0 +rs1668871 1 205268009 205268009 + ENSG00000133069 TMCC2 0 0 18 0 0 8 0 +rs399604 6 33007237 33007237 + ENSG00000204252 HLA-DOA 0 0 2 0 1 1 0 +rs10512627 3 124621375 124621375 + ENSG00000160145 KALRN 0 0 6 0 0 2 0 +rs3731211 9 21986848 21986848 + ENSG00000147889,ENSG00000264545 CDKN2A,AL359922.1 0 1 6 0 0 0 0 +rs2297067 14 103100448 103100448 + ENSG00000205436 EXOC3L4 0 0 0 2 0 0 0 +rs8109288 19 16074749 16074749 + ENSG00000167460,ENSG00000279198 TPM4,AC008894.3 0 0 4 0 1 0 0 +rs4148441 13 95245953 95245953 + ENSG00000125257 ABCC4 0 4 12 0 0 2 0 +rs4521516 5 88804134 88804134 + ENSG00000081189 MEF2C 0 0 31 0 0 3 0 +rs441460 6 25548060 25548060 + ENSG00000079691 CARMIL1 0 1 2 0 0 0 0 +rs559972 17 29487478 29487478 + ENSG00000160551 TAOK1 0 0 3 0 0 1 0 +rs6993770 8 105569300 105569300 + ENSG00000169946 ZFPM2 0 0 6 0 0 2 0 +rs1719271 15 64891602 64891602 + ENSG00000249240 AC069368.1 0 0 2 0 0 1 0 +rs7550918 1 247512257 247512257 + ENSG00000169224 GCSAML 0 0 6 0 0 0 0 +rs6065 17 4933086 4933086 + ENSG00000185245 GP1BA 0 0 1 2 0 0 0 +rs8006385 14 93034681 93034681 + ENSG00000100605 ITPK1 0 0 11 0 0 3 0 +rs17030845 2 43460740 43460740 + ENSG00000115970 THADA 0 3 8 0 0 2 0 +rs17356664 19 45237513 45237513 + ENSG00000007047,ENSG00000283632 MARK4,EXOC3L2 0 0 2 0 0 0 0 +rs3819299 6 31354590 31354590 + ENSG00000234745 HLA-B 0 0 5 0 1 1 0 +rs7317038 13 113358583 113358583 + ENSG00000139835,ENSG00000225083 GRTP1,GRTP1-AS1 0 0 4 0 0 1 0 +rs10076782 5 159177955 159177955 + ENSG00000145860 RNF145 0 0 7 0 0 0 0 +rs2070729 5 132484229 132484229 + ENSG00000125347,ENSG00000197536,ENSG00000283782 IRF1,C5orf56,AC116366.3 0 0 9 0 1 3 0 +rs12969657 18 69869260 69869260 + ENSG00000150637 CD226 0 1 5 0 0 0 0 +rs6995402 8 143931393 143931393 + ENSG00000178209 PLEC 0 0 10 0 0 0 0 +rs625132 2 31259434 31259434 + ENSG00000013016 EHD3 0 0 1 0 0 0 0 +rs16971217 17 35617036 35617036 + ENSG00000006125 AP2B1 0 1 11 0 0 1 0 +rs649729 2 31241519 31241519 + ENSG00000013016 EHD3 0 0 2 0 0 0 0 +rs8076739 17 29387569 29387569 + ENSG00000264808,ENSG00000266111 AC068025.1,AC068025.2 0 0 2 0 0 2 0 +rs3811444 1 247876149 247876149 + ENSG00000162722 TRIM58 0 0 0 1 0 0 0 +rs6141 3 184372478 184372478 + ENSG00000090534 THPO 12 0 0 0 0 0 0 +rs10914144 1 171980610 171980610 + ENSG00000197959 DNM3 0 0 6 0 0 0 0 +rs3000073 14 105263455 105263455 + ENSG00000185024 BRF1 0 0 8 0 0 0 0 +rs9399137 6 135097880 135097880 + ENSG00000112339 HBS1L 0 0 1 0 0 0 0 +rs210134 6 33572432 33572432 + ENSG00000204188 GGNBP1 0 0 1 0 0 1 0 +rs3792366 3 123121029 123121029 + ENSG00000065485 PDIA5 0 2 4 0 0 0 0 +rs4938642 11 119229196 119229196 + ENSG00000110395 CBL 0 0 5 0 0 0 0 +rs2227831 5 76727669 76727669 + ENSG00000181104 F2R 0 0 1 0 0 0 0 +rs1034566 22 19996754 19996754 + ENSG00000099889 ARVCF 0 0 4 0 0 2 0 +rs941207 12 56629500 56629500 + ENSG00000076108 BAZ2A 0 0 7 0 0 2 0