# HG changeset patch
# User iuc
# Date 1488641223 18000
# Node ID 8f62f666dcb63ee2965f9d2db368482610e5a2a4

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2/ commit 6e73e77d186e02d200fc3a61d25311e67864a824

diff -r 000000000000 -r 8f62f666dcb6 graphlan.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/graphlan.xml	Sat Mar 04 10:27:03 2017 -0500
@@ -0,0 +1,96 @@
+<tool id="graphlan" name="GraPhlAn" version="@WRAPPER_VERSION@.0">
+    <description>to produce graphical output of an input tree</description>
+    <macros>
+        <import>graphlan_macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <stdio>
+        <regex match="Warning"
+               source="stderr"
+               level="warning"
+               description="" />
+    </stdio>
+    <version_command>graphlan.py -v</version_command>
+    <command>
+<![CDATA[        
+        graphlan.py
+            --format '$image_format.format'
+            --size '$size'
+            #if $pad
+                --pad '$pad'
+            #end if
+            #if str($image_format.format) == "png" and $image_format.dpi
+                --dpi '$image_format.dpi'
+            #end if
+            '$input_tree'
+            #if str($image_format.format) == "png"
+                '$png_output_image'
+            #else if str($image_format.format) == "pdf"
+                '$pdf_output_image'
+            #else if str($image_format.format) == "ps"
+                '$ps_output_image'
+            #else if str($image_format.format) == "eps"
+                '$eps_output_image'
+            #else
+                '$svg_output_image'
+            #end if
+]]>
+    </command>
+    <inputs>
+        <param name="input_tree" type="data" format="txt,nhx,phyloxml" label="Input tree"/>
+        <conditional name="image_format">
+            <param argument='--format' type="select" label="Output format">
+                <option value="png" selected="true">PNG</option>
+                <option value="pdf">PDF</option>
+                <option value="ps">PS</option>
+                <option value="eps">EPS</option>
+                <option value="svg">SVG</option>
+            </param>
+            <when value="png">
+                <param argument="--dpi" type="integer" label="Dpi of the output image" optional="True"/>
+            </when>
+            <when value="pdf"/>
+            <when value="ps"/>
+            <when value="eps"/>
+            <when value="svg"/>
+        </conditional>
+        <param argument="--size" type="integer" value="7" label="Size of the output image"/>
+        <param argument="--pad" type="integer" label="Distance between the most external graphical element and the border of the image" optional="True"/>
+    </inputs>
+    <outputs>
+        <data format="png" name="png_output_image" label="${tool.name} on ${on_string}: PNG">
+            <filter>image_format['format']=="png"</filter>
+        </data>
+        <data format="pdf" name="pdf_output_image" label="${tool.name} on ${on_string}: PDF">
+            <filter>image_format['format']=="pdf"</filter>
+        </data>
+        <data format="ps" name="ps_output_image" label="${tool.name} on ${on_string}: PS">
+            <filter>image_format['format']=="ps"</filter>
+        </data>
+        <data format="eps" name="eps_output_image" label="${tool.name} on ${on_string}: EPS">
+            <filter>image_format['format']=="eps"</filter>
+        </data>
+        <data format="svg" name="svg_output_image" label="${tool.name} on ${on_string}: SVG">
+            <filter>image_format['format']=="svg"</filter>
+        </data>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input_tree" value="intermediary_tree"/>
+            <param name="format" value="png"/>
+            <param name="dpi" value="100"/>
+            <param name="size" value="7"/>
+            <param name="pad" value="2"/>
+            <output name="png_output_image" file="png_image.png" />
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.
+
+For more information, check the `user manual <https://bitbucket.org/nsegata/graphlan/overview>`_.
+
+    ]]></help>
+    <expand macro="citations"/>
+</tool>
diff -r 000000000000 -r 8f62f666dcb6 graphlan_macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/graphlan_macros.xml	Sat Mar 04 10:27:03 2017 -0500
@@ -0,0 +1,14 @@
+<?xml version="1.0"?>
+<macros>
+    <token name="@WRAPPER_VERSION@">1.0.0</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@WRAPPER_VERSION@">graphlan</requirement>
+        </requirements>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.7717/peerj.1029</citation>
+        </citations>
+    </xml>
+</macros>
\ No newline at end of file
diff -r 000000000000 -r 8f62f666dcb6 test-data/input_annotation
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input_annotation	Sat Mar 04 10:27:03 2017 -0500
@@ -0,0 +1,107 @@
+clade_separation	0.5
+branch_bracket_depth	0.8
+branch_bracket_width	0.2
+annotation_legend_font_size	10
+class_legend_font_size	10
+class_legend_marker_size	1.5
+
+FIRMICUTES	annotation	FIRMICUTES
+FIRMICUTES	clade_marker_color	#2d19ff
+FIRMICUTES	clade_marker_size	40
+
+PROTEOBACTERIA	annotation	PROTEOBACTERIA
+PROTEOBACTERIA	clade_marker_color	#29cc36
+PROTEOBACTERIA	clade_marker_size	40
+
+k__Archaea	clade_marker_size	58.0748302504
+p__Euryarchaeota	clade_marker_size	58.0748302504
+c__Methanobacteria	clade_marker_size	58.0748302504
+o__Methanobacteriales	clade_marker_size	58.0748302504
+f__Methanobacteriaceae	clade_marker_size	58.0748302504
+g__Methanobrevibacter	clade_marker_size	58.0748302504
+s__Methanobrevibacter_smithii	clade_marker_size	58.0748302504
+t__Methanobrevibacter_smithii_unclassified	clade_marker_size	58.0748302504
+k__Bacteria	clade_marker_size	200.0
+p__Actinobacteria	clade_marker_size	22.66961905
+c__Actinobacteria	clade_marker_size	22.66961905
+o__Actinomycetales	clade_marker_size	22.66961905
+f__Propionibacteriaceae	clade_marker_size	22.66961905
+g__Propionibacterium	clade_marker_size	22.66961905
+s__Propionibacterium_acnes	clade_marker_size	22.66961905
+t__Propionibacterium_acnes_unclassified	clade_marker_size	22.66961905
+p__Deinococcus_Thermus	clade_marker_size	22.298886707
+c__Deinococci	clade_marker_size	22.298886707
+o__Deinococcales	clade_marker_size	22.298886707
+f__Deinococcaceae	clade_marker_size	22.298886707
+g__Deinococcus	clade_marker_size	22.298886707
+s__Deinococcus_radiodurans	clade_marker_size	21.1340492974
+t__GCF_000008565	clade_marker_size	21.1340492974
+s__Deinococcus_unclassified	clade_marker_size	21.1817307606
+p__Firmicutes	clade_marker_size	183.285013514
+p__Firmicutes	clade_marker_color	#2d19ff
+c__Bacilli	clade_marker_size	182.398015269
+c__Bacilli	clade_marker_color	#2d19ff
+o__Bacillales	clade_marker_size	164.332515943
+o__Bacillales	clade_marker_color	#2d19ff
+f__Staphylococcaceae	clade_marker_size	164.332515943
+f__Staphylococcaceae	clade_marker_color	#2d19ff
+g__Staphylococcus	clade_marker_size	164.332515943
+g__Staphylococcus	clade_marker_color	#2d19ff
+s__Staphylococcus_aureus	clade_marker_size	122.793996615
+s__Staphylococcus_aureus	clade_marker_color	#2d19ff
+t__Staphylococcus_aureus_unclassified	clade_marker_size	122.793996615
+t__Staphylococcus_aureus_unclassified	clade_marker_color	#2d19ff
+s__Staphylococcus_epidermidis	clade_marker_size	120.392106048
+s__Staphylococcus_epidermidis	clade_marker_color	#2d19ff
+t__Staphylococcus_epidermidis_unclassified	clade_marker_size	120.392106048
+t__Staphylococcus_epidermidis_unclassified	clade_marker_color	#2d19ff
+o__Lactobacillales	clade_marker_size	96.1062970373
+f__Streptococcaceae	clade_marker_size	96.1062970373
+g__Streptococcus	clade_marker_size	96.1062970373
+s__Streptococcus_agalactiae	clade_marker_size	25.9449465996
+t__Streptococcus_agalactiae_unclassified	clade_marker_size	25.9449465996
+s__Streptococcus_mutans	clade_marker_size	93.7375603
+t__Streptococcus_mutans_unclassified	clade_marker_size	93.7375603
+c__Clostridia	clade_marker_size	26.8159954288
+o__Clostridiales	clade_marker_size	26.8159954288
+f__Clostridiaceae	clade_marker_size	26.8159954288
+g__Clostridium	clade_marker_size	26.8159954288
+s__Clostridium_beijerinckii	clade_marker_size	26.8159954288
+t__Clostridium_beijerinckii_unclassified	clade_marker_size	26.8159954288
+p__Proteobacteria	clade_marker_size	102.159086265
+p__Proteobacteria	clade_marker_color	#29cc36
+c__Alphaproteobacteria	clade_marker_size	53.6955516997
+o__Rhodobacterales	clade_marker_size	53.6955516997
+f__Rhodobacteraceae	clade_marker_size	53.6955516997
+g__Rhodobacter	clade_marker_size	53.6955516997
+s__Rhodobacter_sphaeroides	clade_marker_size	53.6955516997
+t__Rhodobacter_sphaeroides_unclassified	clade_marker_size	53.6955516997
+c__Betaproteobacteria	clade_marker_size	20.3264778878
+o__Neisseriales	clade_marker_size	20.3264778878
+f__Neisseriaceae	clade_marker_size	20.3264778878
+g__Neisseria	clade_marker_size	20.3264778878
+s__Neisseria_meningitidis	clade_marker_size	20.3264778878
+t__Neisseria_meningitidis_unclassified	clade_marker_size	20.3264778878
+c__Epsilonproteobacteria	clade_marker_size	20.5761787104
+o__Campylobacterales	clade_marker_size	20.5761787104
+f__Helicobacteraceae	clade_marker_size	20.5761787104
+g__Helicobacter	clade_marker_size	20.5761787104
+s__Helicobacter_pylori	clade_marker_size	20.5761787104
+t__Helicobacter_pylori_unclassified	clade_marker_size	20.5761787104
+c__Gammaproteobacteria	clade_marker_size	85.4517057547
+o__Enterobacteriales	clade_marker_size	78.466031643
+f__Enterobacteriaceae	clade_marker_size	78.466031643
+g__Escherichia	clade_marker_size	78.466031643
+s__Escherichia_coli	clade_marker_size	58.9341374431
+t__Escherichia_coli_unclassified	clade_marker_size	58.9341374431
+s__Escherichia_unclassified	clade_marker_size	49.960616022
+o__Pseudomonadales	clade_marker_size	34.0879564025
+f__Moraxellaceae	clade_marker_size	20.9013800671
+g__Acinetobacter	clade_marker_size	20.9013800671
+s__Acinetobacter_baumannii	clade_marker_size	20.9013800671
+t__Acinetobacter_baumannii_unclassified	clade_marker_size	20.9013800671
+f__Pseudomonadaceae	clade_marker_size	33.3271759768
+g__Pseudomonas	clade_marker_size	33.3271759768
+s__Pseudomonas_aeruginosa	clade_marker_size	25.8720239085
+t__Pseudomonas_aeruginosa_unclassified	clade_marker_size	25.8720239085
+s__Pseudomonas_unclassified	clade_marker_size	28.0078913105
diff -r 000000000000 -r 8f62f666dcb6 test-data/input_tree
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input_tree	Sat Mar 04 10:27:03 2017 -0500
@@ -0,0 +1,82 @@
+k__Archaea
+k__Archaea.p__Euryarchaeota
+k__Archaea.p__Euryarchaeota.c__Methanobacteria
+k__Archaea.p__Euryarchaeota.c__Methanobacteria.o__Methanobacteriales
+k__Archaea.p__Euryarchaeota.c__Methanobacteria.o__Methanobacteriales.f__Methanobacteriaceae
+k__Archaea.p__Euryarchaeota.c__Methanobacteria.o__Methanobacteriales.f__Methanobacteriaceae.g__Methanobrevibacter
+k__Archaea.p__Euryarchaeota.c__Methanobacteria.o__Methanobacteriales.f__Methanobacteriaceae.g__Methanobrevibacter.s__Methanobrevibacter_smithii
+k__Archaea.p__Euryarchaeota.c__Methanobacteria.o__Methanobacteriales.f__Methanobacteriaceae.g__Methanobrevibacter.s__Methanobrevibacter_smithii.t__Methanobrevibacter_smithii_unclassified
+k__Bacteria
+k__Bacteria.p__Actinobacteria
+k__Bacteria.p__Actinobacteria.c__Actinobacteria
+k__Bacteria.p__Actinobacteria.c__Actinobacteria.o__Actinomycetales
+k__Bacteria.p__Actinobacteria.c__Actinobacteria.o__Actinomycetales.f__Propionibacteriaceae
+k__Bacteria.p__Actinobacteria.c__Actinobacteria.o__Actinomycetales.f__Propionibacteriaceae.g__Propionibacterium
+k__Bacteria.p__Actinobacteria.c__Actinobacteria.o__Actinomycetales.f__Propionibacteriaceae.g__Propionibacterium.s__Propionibacterium_acnes
+k__Bacteria.p__Actinobacteria.c__Actinobacteria.o__Actinomycetales.f__Propionibacteriaceae.g__Propionibacterium.s__Propionibacterium_acnes.t__Propionibacterium_acnes_unclassified
+k__Bacteria.p__Deinococcus_Thermus
+k__Bacteria.p__Deinococcus_Thermus.c__Deinococci
+k__Bacteria.p__Deinococcus_Thermus.c__Deinococci.o__Deinococcales
+k__Bacteria.p__Deinococcus_Thermus.c__Deinococci.o__Deinococcales.f__Deinococcaceae
+k__Bacteria.p__Deinococcus_Thermus.c__Deinococci.o__Deinococcales.f__Deinococcaceae.g__Deinococcus
+k__Bacteria.p__Deinococcus_Thermus.c__Deinococci.o__Deinococcales.f__Deinococcaceae.g__Deinococcus.s__Deinococcus_radiodurans
+k__Bacteria.p__Deinococcus_Thermus.c__Deinococci.o__Deinococcales.f__Deinococcaceae.g__Deinococcus.s__Deinococcus_radiodurans.t__GCF_000008565
+k__Bacteria.p__Deinococcus_Thermus.c__Deinococci.o__Deinococcales.f__Deinococcaceae.g__Deinococcus.s__Deinococcus_unclassified
+k__Bacteria.p__Firmicutes
+k__Bacteria.p__Firmicutes.c__Bacilli
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Bacillales
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Bacillales.f__Staphylococcaceae
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Bacillales.f__Staphylococcaceae.g__Staphylococcus
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Bacillales.f__Staphylococcaceae.g__Staphylococcus.s__Staphylococcus_aureus
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Bacillales.f__Staphylococcaceae.g__Staphylococcus.s__Staphylococcus_aureus.t__Staphylococcus_aureus_unclassified
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Bacillales.f__Staphylococcaceae.g__Staphylococcus.s__Staphylococcus_epidermidis
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Bacillales.f__Staphylococcaceae.g__Staphylococcus.s__Staphylococcus_epidermidis.t__Staphylococcus_epidermidis_unclassified
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Lactobacillales
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Lactobacillales.f__Streptococcaceae
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Lactobacillales.f__Streptococcaceae.g__Streptococcus
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Lactobacillales.f__Streptococcaceae.g__Streptococcus.s__Streptococcus_agalactiae
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Lactobacillales.f__Streptococcaceae.g__Streptococcus.s__Streptococcus_agalactiae.t__Streptococcus_agalactiae_unclassified
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Lactobacillales.f__Streptococcaceae.g__Streptococcus.s__Streptococcus_mutans
+k__Bacteria.p__Firmicutes.c__Bacilli.o__Lactobacillales.f__Streptococcaceae.g__Streptococcus.s__Streptococcus_mutans.t__Streptococcus_mutans_unclassified
+k__Bacteria.p__Firmicutes.c__Clostridia
+k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales
+k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Clostridiaceae
+k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Clostridiaceae.g__Clostridium
+k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Clostridiaceae.g__Clostridium.s__Clostridium_beijerinckii
+k__Bacteria.p__Firmicutes.c__Clostridia.o__Clostridiales.f__Clostridiaceae.g__Clostridium.s__Clostridium_beijerinckii.t__Clostridium_beijerinckii_unclassified
+k__Bacteria.p__Proteobacteria
+k__Bacteria.p__Proteobacteria.c__Alphaproteobacteria
+k__Bacteria.p__Proteobacteria.c__Alphaproteobacteria.o__Rhodobacterales
+k__Bacteria.p__Proteobacteria.c__Alphaproteobacteria.o__Rhodobacterales.f__Rhodobacteraceae
+k__Bacteria.p__Proteobacteria.c__Alphaproteobacteria.o__Rhodobacterales.f__Rhodobacteraceae.g__Rhodobacter
+k__Bacteria.p__Proteobacteria.c__Alphaproteobacteria.o__Rhodobacterales.f__Rhodobacteraceae.g__Rhodobacter.s__Rhodobacter_sphaeroides
+k__Bacteria.p__Proteobacteria.c__Alphaproteobacteria.o__Rhodobacterales.f__Rhodobacteraceae.g__Rhodobacter.s__Rhodobacter_sphaeroides.t__Rhodobacter_sphaeroides_unclassified
+k__Bacteria.p__Proteobacteria.c__Betaproteobacteria
+k__Bacteria.p__Proteobacteria.c__Betaproteobacteria.o__Neisseriales
+k__Bacteria.p__Proteobacteria.c__Betaproteobacteria.o__Neisseriales.f__Neisseriaceae
+k__Bacteria.p__Proteobacteria.c__Betaproteobacteria.o__Neisseriales.f__Neisseriaceae.g__Neisseria
+k__Bacteria.p__Proteobacteria.c__Betaproteobacteria.o__Neisseriales.f__Neisseriaceae.g__Neisseria.s__Neisseria_meningitidis
+k__Bacteria.p__Proteobacteria.c__Betaproteobacteria.o__Neisseriales.f__Neisseriaceae.g__Neisseria.s__Neisseria_meningitidis.t__Neisseria_meningitidis_unclassified
+k__Bacteria.p__Proteobacteria.c__Epsilonproteobacteria
+k__Bacteria.p__Proteobacteria.c__Epsilonproteobacteria.o__Campylobacterales
+k__Bacteria.p__Proteobacteria.c__Epsilonproteobacteria.o__Campylobacterales.f__Helicobacteraceae
+k__Bacteria.p__Proteobacteria.c__Epsilonproteobacteria.o__Campylobacterales.f__Helicobacteraceae.g__Helicobacter
+k__Bacteria.p__Proteobacteria.c__Epsilonproteobacteria.o__Campylobacterales.f__Helicobacteraceae.g__Helicobacter.s__Helicobacter_pylori
+k__Bacteria.p__Proteobacteria.c__Epsilonproteobacteria.o__Campylobacterales.f__Helicobacteraceae.g__Helicobacter.s__Helicobacter_pylori.t__Helicobacter_pylori_unclassified
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Enterobacteriales
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Enterobacteriales.f__Enterobacteriaceae
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Enterobacteriales.f__Enterobacteriaceae.g__Escherichia
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Enterobacteriales.f__Enterobacteriaceae.g__Escherichia.s__Escherichia_coli
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Enterobacteriales.f__Enterobacteriaceae.g__Escherichia.s__Escherichia_coli.t__Escherichia_coli_unclassified
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Enterobacteriales.f__Enterobacteriaceae.g__Escherichia.s__Escherichia_unclassified
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Moraxellaceae
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Moraxellaceae.g__Acinetobacter
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Moraxellaceae.g__Acinetobacter.s__Acinetobacter_baumannii
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Moraxellaceae.g__Acinetobacter.s__Acinetobacter_baumannii.t__Acinetobacter_baumannii_unclassified
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Pseudomonadaceae
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Pseudomonadaceae.g__Pseudomonas
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Pseudomonadaceae.g__Pseudomonas.s__Pseudomonas_aeruginosa
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Pseudomonadaceae.g__Pseudomonas.s__Pseudomonas_aeruginosa.t__Pseudomonas_aeruginosa_unclassified
+k__Bacteria.p__Proteobacteria.c__Gammaproteobacteria.o__Pseudomonadales.f__Pseudomonadaceae.g__Pseudomonas.s__Pseudomonas_unclassified
\ No newline at end of file
diff -r 000000000000 -r 8f62f666dcb6 test-data/intermediary_tree
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/intermediary_tree	Sat Mar 04 10:27:03 2017 -0500
@@ -0,0 +1,439 @@
+<phyloxml xmlns="http://www.phyloxml.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd">
+  <phylogeny rooted="true">
+    <clade>
+      <clade>
+        <name>k__Archaea</name>
+        <branch_length>1.0</branch_length>
+        <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">58.0748302504</property>
+        <clade>
+          <name>p__Euryarchaeota</name>
+          <branch_length>1.0</branch_length>
+          <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">58.0748302504</property>
+          <clade>
+            <name>c__Methanobacteria</name>
+            <branch_length>1.0</branch_length>
+            <property applies_to="clade" datatype="xsd:string" id_ref="clade_marker_size" ref="A:1">58.0748302504</property>
+            <clade>
+              <name>o__Methanobacteriales</name>
+              <branch_length>1.0</branch_length>
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+    </clade>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="class_legend_marker_size" ref="A:1">1.5</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="class_legend_font_size" ref="A:1">10</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="branch_bracket_depth" ref="A:1">0.8</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="clade_separation" ref="A:1">0.5</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="branch_bracket_width" ref="A:1">0.2</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="annotation_legend_font_size" ref="A:1">10</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_keys" ref="A:1">FIRMICUTES_._._PROTEOBACTERIA</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_annotation_background_color" ref="A:1">._._._.</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_annotation_background_edge_color" ref="A:1">._._._.</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_clade_marker_color" ref="A:1">#2d19ff_._._#29cc36</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_clade_marker_edge_width" ref="A:1">._._._.</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="leg_clade_marker_size" ref="A:1">40_._._40</property>
+    <property applies_to="phylogeny" datatype="xsd:string" id_ref="ignore_branch_len" ref="A:1">1</property>
+  </phylogeny>
+</phyloxml>
\ No newline at end of file
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