# HG changeset patch
# User iuc
# Date 1729239582 0
# Node ID 7af6f7dafd22a19c526e66d23bc9535e48244514

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/groot commit 85ca2a9a7b2871674dbb9e53e398e459debca529

diff -r 000000000000 -r 7af6f7dafd22 groot.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/groot.xml	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,177 @@
+<tool id="groot" name="Groot" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description> align reads to references and weight variation graphs and generate report</description>
+    <macros>
+        <token name="@TOOL_VERSION@">1.1.2</token>
+        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@PROFILE@">22.05</token>
+    </macros>
+    <xrefs>
+        <xref type="bio.tools">groot</xref>
+    </xrefs>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">groot</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+set -x pipefail;
+#set $extension = str($fastq.ext)
+ln -s -f '${fastq}' 'input.${extension}' &&
+groot index
+    --msaDir '$groot_db_select.fields.path'
+    --indexDir 'grootIndex'
+    --windowSize $windowSize
+    --kmerSize $kmerSize
+    --maxK $maxK
+    --maxSketchSpan $maxSketchSpan
+    --numPart $numPart
+    --sketchSize $sketchSize
+&&
+
+groot align
+    --fastq 'input.${extension}'
+    --indexDir 'grootIndex'
+    --contThresh $contThresh
+    --minKmerCov $minKmerCov
+    --log '$log'
+    $noAlign
+    --processors "\${GALAXY_SLOTS:-1}"
+
+| groot report
+    --covCutoff '$covCutoff'
+    $lowCov
+    > '$report_out'
+
+]]></command>
+    <inputs>
+        <param argument="--fastq" type="data" format="fastqsanger,fastqsanger.gz" label="FASTQ file(s) to align"/>
+        <section name="index" title="Index">
+            <param name="groot_db_select" type="select" label="Groot database">
+                <options from_data_table="groot_database">
+                    <validator message="No groot database is available" type="no_options"/>
+                </options>
+            </param>
+            <param argument="--windowSize" type="integer" min="0" value="100" label="Size of window to sketch graph traversals" />
+            <param argument="--kmerSize" type="integer" min="0" value="31" label="Size of k-mer" />
+            <param argument="--maxK" type="integer" min="0" value="40" label="maxK in the LSH Ensemble" />
+            <param argument="--maxSketchSpan" type="integer" min="0" value="4" label="Maximum number of identical neighbouring sketches permitted in any graph traversal" />
+            <param argument="--numPart" type="integer" min="0" value="8" label="Number of partitions in the LSH Ensemble" />
+            <param argument="--sketchSize" type="integer" min="0" value="21" label="Size of MinHash sketch" />
+        </section>
+        <section name="align" title="Align">
+            <param argument="--contThresh" type="float" min="0" max="1.0" value="0.99" label="Containment threshold for the LSH ensemble" />
+            <param argument="--minKmerCov" type="integer" min="0" value="1" label="Minimum number of k-mers covering each base of a graph segment" />
+            <param argument="--noAlign" type="boolean" truevalue="" falsevalue="--noAlign" label="Perform exact alignment?" 
+                help="If not, graphs will still be weighted using approximate read mappings"/>
+        </section>
+        <section name="report" title="Report">
+            <param argument="--covCutoff" type="float" min="0" max="1.0" value="0.97" label="Coverage cutoff for reporting ARGs" />
+            <param argument="--lowCov" type="boolean" checked="false" truevalue="--lowCov" falsevalue="" label="Report ARGs which may not be covered at the 5'/3' ends" 
+                help="If 'Yes', overrides --covCutoff option"/>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="log" format="txt" label="${tool.name} on ${on_string}: Log"/>
+        <data name="report_out" format="tabular" label="${tool.name} on ${on_string}: Report"/>
+    </outputs>
+    <tests>
+        <test expect_num_outputs="2">
+            <param name="fastq" value="bla-b7-150bp-5x.fq" ftype="fastq"/>
+            <section name="index">
+                <param name="groot_db_select" value="resfinder.90" />
+                <param name="windowSize" value="150"/>
+                <param name="kmerSize" value="31"/>
+                <param name="maxK" value="20"/>
+                <param name="maxSketchSpan" value="30"/>
+                <param name="numPart" value="8"/>
+                <param name="sketchSize" value="20"/>
+            </section>
+            <section name="align">
+                <param name="contThresh" value="0.99"/>
+                <param name="minKmerCov" value="1" />
+                <param name="noAlign" value=""/>
+            </section>
+            <section name="report">
+                <conditional name="arg_report">
+                    <param name="criteria" value="cutoff" />
+                    <param name="covCutoff" value="0.97" />
+                </conditional>
+            </section>
+            <output name="report_out" ftype="tabular">
+                <assert_contents>
+                    <has_text text="blaB-7_1_AF189304"/>
+                    <has_n_lines n="1"/>
+                    <has_n_columns n="4"/>
+                </assert_contents>
+            </output>
+            <output name="log" ftype="txt">
+                <assert_contents>
+                    <has_text text="version"/>
+                    <has_text text="1.1.2"/>
+                </assert_contents>
+            </output>
+        </test>
+        <test expect_num_outputs="2">
+            <param name="fastq" value="argannot_light-150bp-10000-reads.fq.gz" ftype="fastq.gz"/>
+            <section name="index">
+                <param name="groot_db_select" value="arg-annot.90" />
+                <param name="windowSize" value="150"/>
+                <param name="kmerSize" value="41"/>
+                <param name="maxK" value="4"/>
+                <param name="maxSketchSpan" value="30"/>
+                <param name="numPart" value="8"/>
+                <param name="sketchSize" value="21"/>
+            </section>
+            <section name="align">
+                <param name="contThresh" value="0.99"/>
+                <param name="minKmerCov" value="1" />
+                <param name="noAlign" value=""/>
+            </section>
+            <section name="report">
+                <param name="covCutoff" value="0.97" />
+                <param name="lowCov" value="True"/>
+            </section>
+            <output name="report_out" ftype="tabular">
+                <assert_contents>
+                    <has_text text="argannot~~~(Bla)VIM-9~~~AY524988:1-801"/>
+                    <has_text text="argannot~~~(Bla)VIM-20~~~GQ414736:1-801"/>
+                    <has_n_lines n="5"/>
+                    <has_n_columns n="4"/>
+                </assert_contents>
+            </output>
+            <output name="log" ftype="txt">
+                <assert_contents>
+                    <has_text text="version"/>
+                    <has_text text="1.1.2"/>
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+GROOT is a tool to profile Antibiotic Resistance Genes (ARGs) in metagenomic samples.
+
+The method combines variation graph representation of gene sets with an LSH Forest 
+indexing scheme to allow for fast classification of metagenomic reads using 
+similarity-search queries. Subsequent hierarchical local alignment of classified reads 
+against graph traversals facilitates accurate reconstruction of full-length gene sequences 
+using a scoring scheme. 
+
+The main advantages of GROOT over existing tools are:
+
+- quick classification of reads to candidate ARGs
+- accurate annotation of full-length ARGs
+- can run on a laptop in minutes
+
+GROOT aligns reads to ARG variation graphs, producing an alignment file that contains 
+the graph traversals possible for each query read. The alignment file is then used to 
+generate a simple resistome profile report.
+
+**Output**
+
+GROOT will output an ARG alignment file (in BAM format) that contains the graph traversals possible for each query read; the alignment file is then used by GROOT to generate a resistome profile. 
+
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/bty387</citation>
+    </citations>
+</tool>
\ No newline at end of file
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-3.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-3.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,25 @@
+>*argannot~~~(AGly)Aac(3)-IIIc~~~L06161:106-945
+ATGTTCTCTCGTTGGTCGAAACCTCTCGTGCTTGCCGCCGTGACCCGCGCCTCGCTCGCCGCTGATCTCGCCGCGCTTGG
+CCTTGCCGCGGGCGATGCGGTCATGGTCCATGCCGCCGTCAGCAAGGTCGGCCGCCTGCTCGACGGTCCCGACACGATCA
+TCGCCGCTCTGTCCGACGCCGGTCGGCCTGCCGGCACCATCCTCGCCTATGCCGATTGGGAAGCGCGCTACGAGGACCTC
+GTGGACGAGGACGGCCGCGTGCCGCAGGAATGGCGCGAGCACATCCCACCCTTCGATCCGCGGCGCTCACGCGCGATCCG
+CGACAATGGCGTGCTTCCGGAATTCCTGCGGACGACACCGGGTGCGTTGCGCAGCGGCAATCCCGGCGCCTCGATGGTCG
+GGCTCGGCGCCAGAGCGGAATGGTTCACCGCAGACCATCCCCTCGACTACGGCTATGGCGAGGGTTCGCCGCTGGCCAGG
+CTGGTCGAAGCCGGCGGCAAGGTGCTGATGCTCGGGGCGCCGCTCGACACGCTGACCCTGCTGCACCATGCCGAGCATCT
+GGCCGACATCCCCGGCAAGCGCATCCGGCGGATCGAGGTGCCGCTGGCGACGCCGACCGGCACGCAATGGCGCATGATCG
+AGGAATTCGATACCGGCGATCCGATCGTCGAAGGTTTGGCCGAGGACTACTTCGCCGAGATCGTGACGGCGTTCCTTGCC
+GGCGGCCGAGGACGGCAGGGCTTGATCGGCACCGCGCCATCCGTGCTGGTCGATGCTGCCGCAATCACGGCTTTCGGCGT
+CGCCTGGCTGGAATCGCGCTTCGGCTCGCCCTCATCCTGA
+>consensus
+ATGTTCTCTCGTTGGTCGAAACCTCTCGTGCTTGCCGCCGTGACCCGCGCCTCGCTCGCCGCTGATCTCGCCGCGCTTGG
+CCTTGCCGCGGGCGATGCGGTCATGGTCCATGCCGCCGTCAGCAAGGTCGGCCGCCTGCTCGACGGTCCCGACACGATCA
+TCGCCGCTCTGTCCGACGCCGGTCGGCCTGCCGGCACCATCCTCGCCTATGCCGATTGGGAAGCGCGCTACGAGGACCTC
+GTGGACGAGGACGGCCGCGTGCCGCAGGAATGGCGCGAGCACATCCCACCCTTCGATCCGCGGCGCTCACGCGCGATCCG
+CGACAATGGCGTGCTTCCGGAATTCCTGCGGACGACACCGGGTGCGTTGCGCAGCGGCAATCCCGGCGCCTCGATGGTCG
+GGCTCGGCGCCAGAGCGGAATGGTTCACCGCAGACCATCCCCTCGACTACGGCTATGGCGAGGGTTCGCCGCTGGCCAGG
+CTGGTCGAAGCCGGCGGCAAGGTGCTGATGCTCGGGGCGCCGCTCGACACGCTGACCCTGCTGCACCATGCCGAGCATCT
+GGCCGACATCCCCGGCAAGCGCATCCGGCGGATCGAGGTGCCGCTGGCGACGCCGACCGGCACGCAATGGCGCATGATCG
+AGGAATTCGATACCGGCGATCCGATCGTCGAAGGTTTGGCCGAGGACTACTTCGCCGAGATCGTGACGGCGTTCCTTGCC
+GGCGGCCGAGGACGGCAGGGCTTGATCGGCACCGCGCCATCCGTGCTGGTCGATGCTGCCGCAATCACGGCTTTCGGCGT
+CGCCTGGCTGGAATCGCGCTTCGGCTCGCCCTCATCCTGA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-30.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-30.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,17 @@
+>*argannot~~~(AGly)Aac6-IIa~~~M29695:707-1261
+ATGTCCGCGAGCAccccccccATAACTCTTCGCCTCATGACCGAGCGCGACCTGCCGATGCTCCATGACTGGCTCAACCG
+GCCGCACATCGTTGAGTGGTGGGGTGGCGACGAAGAGCGACCGACTCTTGATGAAGTGCTGGAACACTACCTGCCCAGAG
+CGATGGCGGAAGAGTCCGTAACACCGTACATCGCAATGCTGGGCGAGGAACCGATCGGCTATGCTCAGTCGTACGTCGCG
+CTCGGAAGCGGTGATGGCTGGTGGGAAGATGAAACTGATCCAGGAGTGCGAGGAATAGACCAGTCTCTGGCTGACCCGAC
+ACAGTTGAACAAAGGCCTAGGAACAAGGCTTGTCCGCGCTCTCGTTGAACTACTGTTCTCGGACCCCACCGTGACGAAGA
+TTCAGACCGACCCGACTCCGAACAACCATCGAGCCATACGCTGCTATGAGAAGGCAGGATTCGTGCGGGAGAAGATCATC
+ACCACGCCTGACGGGCCGGCGGTTTACATGGTTCAAACACGACAAGCCTTCGAGAGAAAGCGCGGTGTTGCCTAA
+>consensus
+ATGTCCGCGAGCACCCCCCCCATAACTCTTCGCCTCATGACCGAGCGCGACCTGCCGATGCTCCATGACTGGCTCAACCG
+GCCGCACATCGTTGAGTGGTGGGGTGGCGACGAAGAGCGACCGACTCTTGATGAAGTGCTGGAACACTACCTGCCCAGAG
+CGATGGCGGAAGAGTCCGTAACACCGTACATCGCAATGCTGGGCGAGGAACCGATCGGCTATGCTCAGTCGTACGTCGCG
+CTCGGAAGCGGTGATGGCTGGTGGGAAGATGAAACTGATCCAGGAGTGCGAGGAATAGACCAGTCTCTGGCTGACCCGAC
+ACAGTTGAACAAAGGCCTAGGAACAAGGCTTGTCCGCGCTCTCGTTGAACTACTGTTCTCGGACCCCACCGTGACGAAGA
+TTCAGACCGACCCGACTCCGAACAACCATCGAGCCATACGCTGCTATGAGAAGGCAGGATTCGTGCGGGAGAAGATCATC
+ACCACGCCTGACGGGCCGGCGGTTTACATGGTTCAAACACGACAAGCCTTCGAGAGAAAGCGCGGTGTTGCCTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-300.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-300.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,457 @@
+>*argannot~~~(Bla)VIM-10~~~AY524989:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTACGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-11~~~EF116550:128-928
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAGCGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-12~~~DQ143913:1775-2575
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-14~~~EF055455:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAACCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-15~~~EU419745:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTTTGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-16~~~EU419746:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTTGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-17~~~EU118148:1011-1811
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATGATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-18~~~AM778091:27-815
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCGGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGC------------GAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-19~~~FJ915116:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAAAGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-1~~~GU724868:1023-1823
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-20~~~GQ414736:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACGCTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-23~~~GQ242167:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-24~~~HM855205:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACTCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-25~~~HM750249:91-891
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTAGCTAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGGCTTTACCAGATTGCTGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCATCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCCCTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGAAGGCTGGAGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCCGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCTTGCGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-26~~~FR748153:260-1060
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCTTGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-27~~~HQ858608:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCTCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-28~~~JF900599:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCTTGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-29~~~JX311308:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAAAGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACGCTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-2~~~AY884050:551-1351
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-30~~~JN129451:88-888
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-31~~~JN982330:246-1046
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTCATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACGCTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-32~~~JN676230:1550-2350
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGCGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-33~~~JX258134:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATTCGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-34~~~JX013656:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAATCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-35~~~JX982634:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGACCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-36~~~JX982635:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCGGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-37~~~JX982636:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCTCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-38~~~KC469971:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTATTTGACCGCGTCTGTCATGGCTGTAGCTAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGGCTTTACCAGATTGCTGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCATCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCCCTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGAAGGCTGGAGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCCGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCTTGCGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCACAGCACACAAAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-39~~~KF131539:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGGCAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCTTGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-3~~~GU966683:80-880
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGAAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAGCGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-42~~~KP071470:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCAAGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-43~~~KP096412:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGTCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-4~~~JF905459:707-1507
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTCGCAAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGACTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCATTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-5~~~DQ023222:1316-2116
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTACATGACCGCGTCTGTCATGGCTGTAGCTAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGGCTTTACCAGATTGCTGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCATCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCCCTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGAAGGCTGGAGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCCGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCTTGCGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCGTTGAGCGGATTCAAAAACACTACCCGGAAGCAGAGGTCGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCACAGCACACAAAAATCGCTCAGTCGCCGAGTA
+G
+>argannot~~~(Bla)VIM-6~~~AY165025:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCGGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGTAGAGGGGAGCGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-8~~~AY524987:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGGCACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCGGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCAGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>argannot~~~(Bla)VIM-9~~~AY524988:1-801
+ATGTTCAAACTTTTGAGTAAGTTATTGGTCTATTTGACCGCGTCTATCATGGCTATTGCGAGTCCGCTCGCTTTTTCCGT
+AGATTCTAGCGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGGGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCAGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCTGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGATACGCCGGCTAGCCGAGGTAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAACTCTTCTATCCTGGTGCTGCGCATTCGACCGACAACTTAGTTGTGTA
+CGTCCCGTCTGCGAGTGTGCTCTATGGTGGTTGTGCGATTTATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+>consensus
+ATGTTAAAAGTTATTAGTAGTTTATTGGTCTATTTGACCGCGTCTGTCATGGCTGTTGCGAGTCCGTTAGCCCATTCCGG
+GGAGCCGAGTGGTGAGTATCCGACAGTCAACGAAATTCCGGTCGGAGAGGTCCGGCTTTACCAGATTGCCGATGGTGTTT
+GGTCGCATATCGCAACGCAGTCGTTTGATGGCGCGGTCTACCCGTCCAATGGTCTCATTGTCCGTGATGGTGATGAGTTG
+CTTTTGATTGATACAGCGTGGGGTGCGAAAAACACAGCGGCACTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCCGT
+AACGCGTGCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGCGTTGATGTCCTTCGGGCGGCTGGGGTGGCAACGT
+ACGCATCACCGTCGACACGCCGGCTAGCCGAGGCAGAGGGGAACGAGATTCCCACGCACTCTCTAGAAGGACTCTCATCG
+AGCGGGGACGCAGTGCGCTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAATGTGCTATACGGTGGTTGTGCCGTTCATGAGTTGTCACGCACGTCTGCGGGGAACGTGGCCGATG
+CCGATCTGGCTGAATGGCCCACCTCCATTGAGCGGATTCAACAACACTACCCGGAAGCACAGTTCGTCATTCCGGGGCAC
+GGCCTGCCGGGCGGTCTAGACTTGCTCAAGCACACAACGAATGTTGTAAAAGCGCACACAAATCGCTCAGTCGTTGAGTA
+G
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-301.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-301.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,25 @@
+>*argannot~~~(Bla)VIM-13~~~DQ365886:1-801
+ATGTTAAAAGTTATTAGTAGTTTATTGTTCTACATGACCGCCTCTCTAATGGCTGTAGCTAGTCCGTTAGCCCATTCCGG
+GGAGTCGAGAGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGAGAAGTTCGGCTGTACCAGATTGACGATGGTGTTT
+GGTCGCATATCGCAACGCATACGTTTGATGGCGTGGTGTACCCGTCCAATGGTCTCATTGTCCGTGATGGCGATGAGTTG
+CTTTTGATTGATACAGCTTGGGGTACGAAAAACACAGTGGCCCTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCCGT
+AACGCGTTCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGAGTTGATGCCCTTAGGGCGGCTGGAGTGGCGACGT
+ACGCATCGCCCTCGACACGCCGTCTAGCCGAGGCAGAGGGGAACGAGGTTCCCACACACTCTCTAGAAGGGCTCTCATCG
+AGTGGGGACGCAGTGCGTTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCTGGAATTGTCACGCACATCCGCGGGAAACGTGGCCGATG
+CCGACCTGGCTGAATGGCCCGGTTCCGTTGAGCGGATTCAACAACATTACCCAGAAGCAGAGGTGGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACACAAATCGCTCAGTCGCCGAGTA
+G
+>consensus
+ATGTTAAAAGTTATTAGTAGTTTATTGTTCTACATGACCGCCTCTCTAATGGCTGTAGCTAGTCCGTTAGCCCATTCCGG
+GGAGTCGAGAGGTGAGTATCCGACAGTCAGCGAAATTCCGGTCGGAGAAGTTCGGCTGTACCAGATTGACGATGGTGTTT
+GGTCGCATATCGCAACGCATACGTTTGATGGCGTGGTGTACCCGTCCAATGGTCTCATTGTCCGTGATGGCGATGAGTTG
+CTTTTGATTGATACAGCTTGGGGTACGAAAAACACAGTGGCCCTTCTCGCGGAGATTGAGAAGCAAATTGGACTTCCCGT
+AACGCGTTCAGTCTCCACGCACTTTCATGACGACCGCGTCGGCGGAGTTGATGCCCTTAGGGCGGCTGGAGTGGCGACGT
+ACGCATCGCCCTCGACACGCCGTCTAGCCGAGGCAGAGGGGAACGAGGTTCCCACACACTCTCTAGAAGGGCTCTCATCG
+AGTGGGGACGCAGTGCGTTTCGGTCCAGTAGAGCTCTTCTATCCTGGTGCTGCGCATTCGACCGACAATCTGGTTGTATA
+CGTCCCGTCAGCGAACGTGCTATACGGTGGTTGTGCCGTTCTGGAATTGTCACGCACATCCGCGGGAAACGTGGCCGATG
+CCGACCTGGCTGAATGGCCCGGTTCCGTTGAGCGGATTCAACAACATTACCCAGAAGCAGAGGTGGTCATTCCCGGGCAC
+GGTCTACCGGGCGGTCTAGACTTGCTCCAGCACACAGCGAACGTTGTCAAAGCACACACAAATCGCTCAGTCGCCGAGTA
+G
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-302.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-302.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,23 @@
+>*argannot~~~(Bla)VIM-7~~~AJ536835:150-946
+ATGTTTCAAATTCGCAGCTTTCTGGTTGGTATCAGTGCATTCGTCATGGCCGTACTTGGATCAGCAGCATATTCCGCACA
+GCCTGGCGGTGAATATCCGACAGTAGATGACATACCGGTAGGGGAAGTTCGGCTGTACAAGATTGGCGATGGCGTTTGGT
+CGCATATCGCAACTCAGAAACTCGGTGACACGGTGTACTCGTCTAATGGACTTATCGTCCGCGATGCTGATGAGTTGCTT
+CTTATTGATACAGCGTGGGGGGCGAAGAACACGGTAGCCCTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCAGTAAC
+GCGCTCAATTTCTACGCACTTCCATGACGATCGAGTCGGTGGAGTTGATGTCCTCCGGGCGGCTGGAGTGGCAACGTACA
+CCTCACCCTTGACACGCCAGCTGGCCGAAGCGGCGGGAAACGAGGTGCCTGCGCACTCTCTAAAAGCGCTCTCCTCTAGT
+GGAGATGTGGTGCGCTTCGGTCCCGTAGAGGTTTTCTATCCTGGTGCTGCGCATTCGGGCGACAATCTTGTGGTATACGT
+GCCGGCCGTGCGCGTACTGTTTGGTGGCTGTGCAGTTCATGAGGCGTCACGCGAATCCGCGGGTAATGTTGCCGATGCCA
+ATTTGGCAGAATGGCCTGCTACCATTAAACGAATTCAACAGCGGTATCCGGAAGCAGAGGTCGTCATCCCCGGCCACGGT
+CTACCGGGCGGTCTGGAATTGCTCCAACACACAACTAACGTTGTCAAAACGCACAAAGTACGCCCGGTGGCCGAGTAA
+>consensus
+ATGTTTCAAATTCGCAGCTTTCTGGTTGGTATCAGTGCATTCGTCATGGCCGTACTTGGATCAGCAGCATATTCCGCACA
+GCCTGGCGGTGAATATCCGACAGTAGATGACATACCGGTAGGGGAAGTTCGGCTGTACAAGATTGGCGATGGCGTTTGGT
+CGCATATCGCAACTCAGAAACTCGGTGACACGGTGTACTCGTCTAATGGACTTATCGTCCGCGATGCTGATGAGTTGCTT
+CTTATTGATACAGCGTGGGGGGCGAAGAACACGGTAGCCCTTCTCGCGGAGATTGAAAAGCAAATTGGACTTCCAGTAAC
+GCGCTCAATTTCTACGCACTTCCATGACGATCGAGTCGGTGGAGTTGATGTCCTCCGGGCGGCTGGAGTGGCAACGTACA
+CCTCACCCTTGACACGCCAGCTGGCCGAAGCGGCGGGAAACGAGGTGCCTGCGCACTCTCTAAAAGCGCTCTCCTCTAGT
+GGAGATGTGGTGCGCTTCGGTCCCGTAGAGGTTTTCTATCCTGGTGCTGCGCATTCGGGCGACAATCTTGTGGTATACGT
+GCCGGCCGTGCGCGTACTGTTTGGTGGCTGTGCAGTTCATGAGGCGTCACGCGAATCCGCGGGTAATGTTGCCGATGCCA
+ATTTGGCAGAATGGCCTGCTACCATTAAACGAATTCAACAGCGGTATCCGGAAGCAGAGGTCGTCATCCCCGGCCACGGT
+CTACCGGGCGGTCTGGAATTGCTCCAACACACAACTAACGTTGTCAAAACGCACAAAGTACGCCCGGTGGCCGAGTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-303.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-303.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,29 @@
+>*argannot~~~(Bla)ZEG-1~~~AY265891:1-1013
+GCGCCAATGTCAGATAAACAGCTGGCTGATGTGGTGAAACGTACCATTACGCCGTTGATGAAAGCCCAGACCATTCCCGG
+AATGGCGGTTGCGGTGATTTATCAGGGTCAGCCGCACTACTTTACCTTCGGCAATGCTGATGTCGCGGCAAACAAACCTG
+TCACCCCGCAAACCTTATTTGAGCTGGGTTCTATTAGTAAAACCTTCACCGGTGTTTTAGGTGGGGATGCCATTGCTCGC
+GGTGAGATTTCACTGACCGATCCGGCCACAAAATACTGGCCAGAATTGTCGGGCAAACAGTGGCAGGGTATTCGCATGCT
+CGATCTGGCGACCTATACCGCCGGTGGTCTGCCCCTGCAGGTACCGGACGAGGTTACGGATAGCGCCTCTCTGCTGCGCT
+TCTATCAAAACTGGCAGCCACAGTGGAAGCCGAGCACCACGCGCCTTTATGCGAATGCCAGCATCGGTCTTTTTGGTGCA
+CTGGCGGTTAAACCGTCCGGCATGAGCTATGCGCAGGCAATGACGGAGCGGGTCTTTAAGCCGCTCAAACTGGGCCATAC
+CTGGATTAACGTTCCGAAAACTGAAGAGGAGCATTACGCCTGGGGCTACCGCGACGGCAAACCGGTACACGTTTCGCCAG
+GCGCGCTGGACGCCGAAGCCTATGGCGTCAAAAGCAACGTGCAAGATATGGCGAGCTGGGTGATGGCAAATATAGCGCCG
+GAGCACGTTGCTGATGCGTCACTTAAGCAAGGGATCGCGCTGGCACAGTCTCGTTACTGGCGCATCGGCTCCATGTATCA
+GGGGCTGGGCTGGGAAATGCTCAACTGGCCGGTCGATGCCAAAACCGTTGTCGGCGGCAGTGATAACAACGTTGCGCTGG
+CACCGTTGCCTGCGAGAGAAGTGACTCCCCCGGTACCTCCGGTTAAGGCTTCATGGGTGCACAAAACGGGTTCAACTGGC
+GGATTTGGGGGCTATGTAGCTTTCATTCCGGAGAAAAATCTCGGTATCGTGAT
+>consensus
+GCGCCAATGTCAGATAAACAGCTGGCTGATGTGGTGAAACGTACCATTACGCCGTTGATGAAAGCCCAGACCATTCCCGG
+AATGGCGGTTGCGGTGATTTATCAGGGTCAGCCGCACTACTTTACCTTCGGCAATGCTGATGTCGCGGCAAACAAACCTG
+TCACCCCGCAAACCTTATTTGAGCTGGGTTCTATTAGTAAAACCTTCACCGGTGTTTTAGGTGGGGATGCCATTGCTCGC
+GGTGAGATTTCACTGACCGATCCGGCCACAAAATACTGGCCAGAATTGTCGGGCAAACAGTGGCAGGGTATTCGCATGCT
+CGATCTGGCGACCTATACCGCCGGTGGTCTGCCCCTGCAGGTACCGGACGAGGTTACGGATAGCGCCTCTCTGCTGCGCT
+TCTATCAAAACTGGCAGCCACAGTGGAAGCCGAGCACCACGCGCCTTTATGCGAATGCCAGCATCGGTCTTTTTGGTGCA
+CTGGCGGTTAAACCGTCCGGCATGAGCTATGCGCAGGCAATGACGGAGCGGGTCTTTAAGCCGCTCAAACTGGGCCATAC
+CTGGATTAACGTTCCGAAAACTGAAGAGGAGCATTACGCCTGGGGCTACCGCGACGGCAAACCGGTACACGTTTCGCCAG
+GCGCGCTGGACGCCGAAGCCTATGGCGTCAAAAGCAACGTGCAAGATATGGCGAGCTGGGTGATGGCAAATATAGCGCCG
+GAGCACGTTGCTGATGCGTCACTTAAGCAAGGGATCGCGCTGGCACAGTCTCGTTACTGGCGCATCGGCTCCATGTATCA
+GGGGCTGGGCTGGGAAATGCTCAACTGGCCGGTCGATGCCAAAACCGTTGTCGGCGGCAGTGATAACAACGTTGCGCTGG
+CACCGTTGCCTGCGAGAGAAGTGACTCCCCCGGTACCTCCGGTTAAGGCTTCATGGGTGCACAAAACGGGTTCAACTGGC
+GGATTTGGGGGCTATGTAGCTTTCATTCCGGAGAAAAATCTCGGTATCGTGAT
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-304.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-304.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,29 @@
+>*argannot~~~(Bla)Zn-dependent_hydrolase~~~NC_010410:882015-882977
+ATGAAAAAACTATTTGTAGCCTTAGGACTTATCATGGGTAGCTTGCATATAAGCTATGCAGAACCAGCTTCAGCTCAACA
+AGTACCCGGATATTACCATCATCAATTTGGTAATTATCGGATAACTTCCTTGCTCGATGGCACTATTTATCTAGATCCTA
+AATTGTTTAAAAATTTAAGTCAGGCTGAAAAAACTAAAATTTTAACCAAATATGCTGCTGTAAATGAGAAGGGGATCCAG
+ACTTCAGTAAATGCCTTTTTAGTTGATGATGGTAAAAGTTTGACGCTGGTTGACAGTGGAGCTGCGAGTTGTTTTGGCCC
+ACAGTTAGGTTCAATTGCTAAAAATCTTGAATTAGCGGGCTATCAACTTGCCAATGTGAAAACTGTTTTATTGACCCACT
+TACATCCAGACCATGTGTGCGGTATTGCTCAAAATGGAAAAGCCGTATTTCCTAATGCAACCATCTATGCTCATGAGCGT
+GAAGCAGATTATTGGTTAAATCCAGCAAATGAAAAAACTGTACCAGCGGATAAAAAAGAAAATTATTTAGGTACTGTTAA
+AAACGTAAAAGCTGCACTTGCACCTTATCAAGCAAAAAAAGCATTCAAAACCTTTAAAGATGGTGATGTTATTCAAGGTT
+TTGAAGTGATCAATACACATGGGCACACACCGGGACACCATAGCTTCCGTTTGAAGAGTAAAGGGCAACAAATTGTCTTT
+GTTGGTGATATTGTCCACTCACATTCTTTACAGTTTGATGCTCCAAAAACTGGGGTAGATTTTGATGTAAATTCAGAGCA
+GGCAATTAATACTCGTTTAAAAATGTTTGCTGAAATTTCAAATAAGCAACAATGGGTAGCTGCCCCGCATTTACCGTTCC
+CAGGAATTGGTCATGTGTATAAAGTGAATGCTGAGCAGTATCAGTGGATTCCTTTATATTTTAATAACAGTCTTGATAAA
+TAA
+>consensus
+ATGAAAAAACTATTTGTAGCCTTAGGACTTATCATGGGTAGCTTGCATATAAGCTATGCAGAACCAGCTTCAGCTCAACA
+AGTACCCGGATATTACCATCATCAATTTGGTAATTATCGGATAACTTCCTTGCTCGATGGCACTATTTATCTAGATCCTA
+AATTGTTTAAAAATTTAAGTCAGGCTGAAAAAACTAAAATTTTAACCAAATATGCTGCTGTAAATGAGAAGGGGATCCAG
+ACTTCAGTAAATGCCTTTTTAGTTGATGATGGTAAAAGTTTGACGCTGGTTGACAGTGGAGCTGCGAGTTGTTTTGGCCC
+ACAGTTAGGTTCAATTGCTAAAAATCTTGAATTAGCGGGCTATCAACTTGCCAATGTGAAAACTGTTTTATTGACCCACT
+TACATCCAGACCATGTGTGCGGTATTGCTCAAAATGGAAAAGCCGTATTTCCTAATGCAACCATCTATGCTCATGAGCGT
+GAAGCAGATTATTGGTTAAATCCAGCAAATGAAAAAACTGTACCAGCGGATAAAAAAGAAAATTATTTAGGTACTGTTAA
+AAACGTAAAAGCTGCACTTGCACCTTATCAAGCAAAAAAAGCATTCAAAACCTTTAAAGATGGTGATGTTATTCAAGGTT
+TTGAAGTGATCAATACACATGGGCACACACCGGGACACCATAGCTTCCGTTTGAAGAGTAAAGGGCAACAAATTGTCTTT
+GTTGGTGATATTGTCCACTCACATTCTTTACAGTTTGATGCTCCAAAAACTGGGGTAGATTTTGATGTAAATTCAGAGCA
+GGCAATTAATACTCGTTTAAAAATGTTTGCTGAAATTTCAAATAAGCAACAATGGGTAGCTGCCCCGCATTTACCGTTCC
+CAGGAATTGGTCATGTGTATAAAGTGAATGCTGAGCAGTATCAGTGGATTCCTTTATATTTTAATAACAGTCTTGATAAA
+TAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-305.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-305.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,71 @@
+>*argannot~~~(Bla)cfxA2~~~AF504910:1-966
+ATGGaaaaaaacagaaaaaaaCAAATCGTAGTTTTGAGTATAGCTTTAGTTTGCATTTTCATCTTGGTATTTTCATTGTT
+CCATAAATCAGCGACAAAAGGTAGCGCAAATCCTCCTTTAACAAATGTTTTGACTGATAGCATTTCTCAAATTGTCTCAG
+CTTGTCCTGGCGAAATTGGTGTGGCGGTTATTGTTAATAACAGAGATACGGTTAAGGTCAATAATAAGAGTGTTTATCCT
+ATGATGAGTGTGTTTAAGGTTCATCAGGCATTAGCTCTTTGTAATGACTTTGACAATAAAGGAATTTCACTTGATACCTT
+AGTAAATATAAATAGGGATAAACTTGACCCAAAGACTTGGAGTCCTATGCTGAAAGATTATTCAGGGCCAGTCATATCAT
+TGACAGTGAGAGATTTGCTGCGTTATACTCTTACTCAGAGTGACAACAATGCAAGCAACCTTATGTTTAAGGATATGGTT
+AATGTCGCTCAAACAGATAGTTTTGTAGCCACACTCATTCCTCGTTCAAGTTTTCAGATAGCTTATACGGAAGAGGAAAT
+GTCGGCTGACCATAACAAGGCTTACTCTAACTATACATCTCCTCTTGGTGCTGCAATGTTGATGAATCGTTTGTTTACTG
+AAGGTCTTATCGATGATGAGAAACAAAGTTTCATTAAGAATACGTTAAAAGAATGCAAAACAGGTGTAGATAGGATAGCA
+GCTCCACTTCTTGATAAAGAAGGGGTTGTTATAGCGCATAAGACAGGTTCAGGTTATGTTAATGAAAATGGTGTTCTTGC
+AGCTCACAATGATGTTGCCTATATATGTCTGCCTAATAATATCAGTTATACCTTAGCGGTATTTGTTAAGGATTTCAAGG
+GAAATGAATCACAAGCGTCACAATATGTTGCGCATATATCAGCTGTAGTATATTCTTTATTAATGCAAACTTCAGTAAAA
+TCTTAA
+>argannot~~~(Bla)cfxA4~~~AY769933:1-966
+ATGGaaaaaaacagaaaaaaaCAAATCGTAGTTTTGAGTATAGCTTTAGTTTGCATTTTCATCTTGGTATTTTCATTGTT
+CCATAAATCAGCGACAAAAGATAGCGCAAATCCTCCTTTAACAAATGTTTTGACTGATAGCATTTCTCAAATTGTCTCAG
+CTTGTCCTGGCGAAATTGGTGTGGCGGTTATTGTTAATAACAGAGATACGGTTAAGGTCAATAATAAGAGTGTTTATCCT
+ATGATGAGTGTGTTTAAGGTTCATCAGGCATTAGCTCTTTGTAATGACTTTGACAATAAAGGAATTTCACTTGATACCTT
+AGTAAATATAAATAGGGATAAACTTGACCCAAAGACTTGGAGTCCTATGCTGAAAGATTATTCAGGGCCAGTCATATCAT
+TGACAGTGAGAGATTTGCTGCGTTATACTCTTACTCAGAGTGACAACAATGCAAGCAACCTTATGTTTAAGGATATGGTT
+AATGTCGCTCAAACAGATAGTTTTATAGCCACACTCATTCCTCGTTCAAGTTTTCAGATAGCTTATACGGAAGAGGAAAT
+GTCGGCTGACCATAACAAGGCTTACTCTAACTATACATCTCCTCTTGGTGCTGCAATGTTGATGAATCGTTTGTTTACTG
+AAGGTCTTATCGATGATGAGAAACAAAGTTTCATTAAGAATACGTTAAAAGAATGCAAAACAGGTGTAGATAGGATAGCA
+GCTCCACTTCTTGATAAAGAAGGGGTTGTTATAGCGCATAAGACAGGTTCAGGTAATGTTAATGAAAATGGTGTTCTTGC
+AGCTCACAATGATGTTGCCTATATATGTCTGCCTAATAATATCAGTTATACCTTAGCGGTATTTGTTAAGGATTTCAAGG
+GAAATGAATCACAAGCGTCACAATATGTTGCGCATATATCAGCTGTAGTATATTCTTTATTAATGCAAACTTCAGTAAAA
+TCTTAA
+>argannot~~~(Bla)cfxA5~~~AY769934:28-993
+ATGGaaaaaaacagaaaaaaaCAAATCGTAGTTTTGAGTATAGCTTTAGTTTGCATTTTCATCTTGGTATTTTCATTGTT
+CCATAAATCAGCGACAAAAGATAGCGCAAATCCTCCTTTAACAAATGTTTTGACTGATAGCATTTCTCAAATTGTCTCAG
+CTTGTCCTGGCGAAATTGGTGTGGCGGTTATTGTTAATAACAGAGATACGGTTAAGGTCAATAATAAGAGTGTTTATCCT
+ATGATGAGTGTGTTTAAGGTTCATCAGGCATTAGCTCTTTGTAATGACTTTGACAATAAAGGAATTTCACTTGATACCTT
+AGTAAATATAAATAGGGATAAACTTGACCCAAAGACTTGGAGTCCTATGCTGAAAGATTATTCAGGGCCAGTCATATCAT
+TGACAGTGAGAGATTTGCTGCGTTATACTCTTACTCAGAGTGACAACAATGCAAGCAACCTTATGTTTAAGGATATGGTT
+AATGTCGCTCAAACAGATAGTTTTATAGCCACACTCATTCCTCGTTCAAGTTTTCAGATAGCTTATACGGAAGAGGAAAT
+GTCGGCTGACCATAACAAGGCTTACTCTAACTATACATCTCCTCTTGGTGCTGCAATGTTGATGAATCGTTTGTTTACTG
+AAGGTCTTATCGATGATGAGAAACAAAGTTTCATTAAGAATACGTTAAAAGAATGCAAAACAGGTGTAGATAGGATAGCA
+GCTCCACTTCTTGATAAAGAAGGGGTTGTTATAGCGCATAAGACAGGTTCAGGTTGTGTTAATGAAAATGGTGTTCTTGC
+AGCTCACAATGATGTTGCCTATATATGTCTGCCTAATAATATCAGTTATACCTTAGCGGTATTTGTTAAGGATTTCAAGG
+GAAATGAATCACAAGCGTCACAATATGTTGCGCATATATCAGCTGTAGTATATTCTTTATTAATGCAAACTTCAGTAAAA
+TCTTAA
+>argannot~~~(Bla)cfxA~~~U38243:150-1115
+ATGGaaaaaaacagaaaaaaaCAAATCGTAGTTTTGAGTATAGCTTTAGTTTGCATTTTCATCTTGGTATTTTCATTGTT
+CCATAAATCAGCGACAAAAGATAGCGCAAATCCTCCTTTAACAAATGTTTTGACTGATAGCATTTCTCAAATTGTCTCAG
+CTTGTCCTGGCGAAATTGGTGTGGCGGTTATTGTTAATAACAGAGATACGGTTAAGGTCAATAATAAGAGTGTTTATCCT
+ATGATGAGTGTGTTTAAGGTTCATCAGGCATTAGCTCTTTGTAATGACTTTGACAATAAAGGAATTTCACTTGATACCTT
+AGTAAATATAAATAGGGATAAACTTGACCCAAAGACTTGGAGTCCTATGCTGAAAGATTATTCAGGGCCAGTCATATCAT
+TGACAGTGAGAGATTTGCTGCGTTATACTCTTACTCAGAGTGACAACAATGCAAGCAACCTTATGTTTAAGGATATGGTT
+AATGTCGCTCAAACAGATAGTTTTATAGCCACACTCATTCCTCGTTCAAGTTTTCAGATAGCTTATACGGAAGAGGAAAT
+GTCGGCTGACCATAACAAGGCTTACTCTAACTATACATCTCCTCTTGGTGCTGCAATGTTGATGAATCGTTTGTTTACTG
+AAGGTCTTATCGATGATGAGAAACAAAGTTTCATTAAGAATACGTTAAAAGAATGCAAAACAGGTGTAGATAGGATAGCA
+GCTCCACTTCTTGATAAAGAAGGGGTTGTTATAGCGCATAAGACAGGTTCAGGTTATGTTAATGAAAATGGTGTTCTTGC
+AGCTCACAATGATGTTGCCTATATATGTCTGCCTAATAATATCAGTTATACCTTAGCGGTATTTGTTAAGGATTTCAAGG
+GAAATAAATCACAAGCGTCACAATATGTTGCGCATATATCAGCTGTAGTATATTCTTTATTAATGCAAACTTCAGTAAAA
+TCTTAA
+>consensus
+ATGGAAAAAAACAGAAAAAAACAAATCGTAGTTTTGAGTATAGCTTTAGTTTGCATTTTCATCTTGGTATTTTCATTGTT
+CCATAAATCAGCGACAAAAGATAGCGCAAATCCTCCTTTAACAAATGTTTTGACTGATAGCATTTCTCAAATTGTCTCAG
+CTTGTCCTGGCGAAATTGGTGTGGCGGTTATTGTTAATAACAGAGATACGGTTAAGGTCAATAATAAGAGTGTTTATCCT
+ATGATGAGTGTGTTTAAGGTTCATCAGGCATTAGCTCTTTGTAATGACTTTGACAATAAAGGAATTTCACTTGATACCTT
+AGTAAATATAAATAGGGATAAACTTGACCCAAAGACTTGGAGTCCTATGCTGAAAGATTATTCAGGGCCAGTCATATCAT
+TGACAGTGAGAGATTTGCTGCGTTATACTCTTACTCAGAGTGACAACAATGCAAGCAACCTTATGTTTAAGGATATGGTT
+AATGTCGCTCAAACAGATAGTTTTATAGCCACACTCATTCCTCGTTCAAGTTTTCAGATAGCTTATACGGAAGAGGAAAT
+GTCGGCTGACCATAACAAGGCTTACTCTAACTATACATCTCCTCTTGGTGCTGCAATGTTGATGAATCGTTTGTTTACTG
+AAGGTCTTATCGATGATGAGAAACAAAGTTTCATTAAGAATACGTTAAAAGAATGCAAAACAGGTGTAGATAGGATAGCA
+GCTCCACTTCTTGATAAAGAAGGGGTTGTTATAGCGCATAAGACAGGTTCAGGTTATGTTAATGAAAATGGTGTTCTTGC
+AGCTCACAATGATGTTGCCTATATATGTCTGCCTAATAATATCAGTTATACCTTAGCGGTATTTGTTAAGGATTTCAAGG
+GAAATGAATCACAAGCGTCACAATATGTTGCGCATATATCAGCTGTAGTATATTCTTTATTAATGCAAACTTCAGTAAAA
+TCTTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-306.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-306.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,29 @@
+>*argannot~~~(Bla)cfxA6~~~GQ342996:798-1793
+ATGTCAAACTATAGTGTTGCGGAATTAAGAAACATGaaaaaaaacagaaaaaaGCAAATCGTAGTTTTGTGTATAGCTTT
+AGTTTGCATCTTCATCTTGGTGTTCTCATTGTCCCATAAATCAGCTACAAAAGGTAGCGCGAATCCTCCATTAACAGATG
+TTTTGACTGATAGCATTTCTCAGATTGTCTCGGCTTGTCCTGGTGAAATTGGTGTGGCGGTTATTATTAATAACACAGAT
+ACGGTTAGTGTTAATAATAAAAGCATTTATCCTATGATGAGTGTATTTAAGGTTCATCAGGCATTAGCTCTTTGCAATGA
+TTTTGACAAAAAAGGCCTTTCCCTTGATACCTTGGTAAAGATAAATAGGGAAAAACTTGATCCAAAGACATGGAGCCCTA
+TGATGAAAGATTATTCAGCACCAGTTATATCGTTGACAGTAAGAGATCTGTTGCGCTATACTCTTTCCCAGAGCGACAAT
+AATGCAAGCAATATCATGTTTAAGAATATGCTCAATACTGCACAAACAGACAGTTTTATAGCGAAACTCATACCACGTTC
+GAGTTTTCAGATAGCTTATACAGAAGAGGAAATGTCCGCTGACCATGACAAAGCTTACTCTAATTACACATCTCCTCTTG
+GTGCTGCAATGTTGATGAATCGTTTGTTTACAGAAAGTCTTATCAGTAATGAGAAACAAGATTTCATTAAGAATGCATTG
+AAAGAATGTAAAACAGGTATAGATAGGATAGTAGCTCCACTTCTTGATAAAGAAGGGGTTGTAATAGCACATAAGACAGG
+TTCTGGTAATGTCAATGAAAATGGTATTCTTGCAGCTCAGAATGATGTAGCCTATATATGTCTGCCTAATAAGGTCTGCT
+ATACCTTAGCTGTATTTGTTAAGGATTTCAAGGGAAATGAATCACAAGCGTCACAATTTGTTGCGCATATATCAGCGGTA
+GTATATTCTTTATTAATCAATACTGCGTTAAATTAA
+>consensus
+ATGTCAAACTATAGTGTTGCGGAATTAAGAAACATGAAAAAAAACAGAAAAAAGCAAATCGTAGTTTTGTGTATAGCTTT
+AGTTTGCATCTTCATCTTGGTGTTCTCATTGTCCCATAAATCAGCTACAAAAGGTAGCGCGAATCCTCCATTAACAGATG
+TTTTGACTGATAGCATTTCTCAGATTGTCTCGGCTTGTCCTGGTGAAATTGGTGTGGCGGTTATTATTAATAACACAGAT
+ACGGTTAGTGTTAATAATAAAAGCATTTATCCTATGATGAGTGTATTTAAGGTTCATCAGGCATTAGCTCTTTGCAATGA
+TTTTGACAAAAAAGGCCTTTCCCTTGATACCTTGGTAAAGATAAATAGGGAAAAACTTGATCCAAAGACATGGAGCCCTA
+TGATGAAAGATTATTCAGCACCAGTTATATCGTTGACAGTAAGAGATCTGTTGCGCTATACTCTTTCCCAGAGCGACAAT
+AATGCAAGCAATATCATGTTTAAGAATATGCTCAATACTGCACAAACAGACAGTTTTATAGCGAAACTCATACCACGTTC
+GAGTTTTCAGATAGCTTATACAGAAGAGGAAATGTCCGCTGACCATGACAAAGCTTACTCTAATTACACATCTCCTCTTG
+GTGCTGCAATGTTGATGAATCGTTTGTTTACAGAAAGTCTTATCAGTAATGAGAAACAAGATTTCATTAAGAATGCATTG
+AAAGAATGTAAAACAGGTATAGATAGGATAGTAGCTCCACTTCTTGATAAAGAAGGGGTTGTAATAGCACATAAGACAGG
+TTCTGGTAATGTCAATGAAAATGGTATTCTTGCAGCTCAGAATGATGTAGCCTATATATGTCTGCCTAATAAGGTCTGCT
+ATACCTTAGCTGTATTTGTTAAGGATTTCAAGGGAAATGAATCACAAGCGTCACAATTTGTTGCGCATATATCAGCGGTA
+GTATATTCTTTATTAATCAATACTGCGTTAAATTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-307.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-307.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,29 @@
+>*argannot~~~(Bla)cphA1~~~NC_000918:1269541-1270521
+ATGGGGGGCTTTCTCTTCTTTTTTCTCCTGGTTTTATTCTCCTTCTCGAGTGAGTATCCTAAACACGTAAAGGAAACGTT
+AAGGAAGATAACCGACAGGATTTACGGAGTTTTCGGAGTCTACGAACAGGTATCTTACGAAAACAGGGGTTTTATATCCA
+ACGCCTACTTCTACGTAGCCGATGACGGCGTTCTCGTTGTGGATGCTTTGAGCACTTACAAACTAGGGAAGGAATTAATA
+GAAAGCATCAGGAGCGTTACGAATAAACCCATAAGGTTTTTAGTCGTCACACACTATCACACCGACCACTTCTACGGTGC
+AAAAGCTTTCAGAGAAGTTGGAGCTGAAGTTATAGCCCACGAGTGGGCATTCGATTACATATCCCAACCTTCGAGTTACA
+ACTTCTTTTTAGCAAGAAAGAAAATTTTAAAGGAACATCTGGAAGGAACGGAATTAACTCCTCCAACTATAACACTTACC
+AAAAACTTAAACGTCTACCTTCAGGTGGGAAAGGAGTACAAAAGGTTTGAAGTCTTGCACCTTTGCAGGGCTCACACGAA
+CGGAGATATAGTCGTATGGATACCCGACGAAAAGGTACTCTTCAGCGGGGACATAGTATTTGACGGAAGACTGCCCTTTT
+TAGGCTCTGGGAACTCAAGAACTTGGCTTGTTTGTCTTGACGAAATTCTTAAGATGAAACCAAGAATACTCCTTCCGGGA
+CACGGGGAAGCTTTAATTGGTGAGAAAAAGATAAAAGAAGCGGTAAGCTGGACGAGGAAGTACATAAAGGATCTGAGGGA
+AACTATAAGGAAACTCTACGAAGAGGGTTGTGACGTTGAGTGCGTAAGGGAGAGGATAAACGAGGAGTTGATAAAGATAG
+ATCCCTCTTACGCTCAGGTGCCTGTATTCTTTAACGTGAACCCTGTAAACGCCTACTACGTTTACTTTGAAATAGAAAAC
+GAAATCCTGATGGGAGAGTGA
+>consensus
+ATGGGGGGCTTTCTCTTCTTTTTTCTCCTGGTTTTATTCTCCTTCTCGAGTGAGTATCCTAAACACGTAAAGGAAACGTT
+AAGGAAGATAACCGACAGGATTTACGGAGTTTTCGGAGTCTACGAACAGGTATCTTACGAAAACAGGGGTTTTATATCCA
+ACGCCTACTTCTACGTAGCCGATGACGGCGTTCTCGTTGTGGATGCTTTGAGCACTTACAAACTAGGGAAGGAATTAATA
+GAAAGCATCAGGAGCGTTACGAATAAACCCATAAGGTTTTTAGTCGTCACACACTATCACACCGACCACTTCTACGGTGC
+AAAAGCTTTCAGAGAAGTTGGAGCTGAAGTTATAGCCCACGAGTGGGCATTCGATTACATATCCCAACCTTCGAGTTACA
+ACTTCTTTTTAGCAAGAAAGAAAATTTTAAAGGAACATCTGGAAGGAACGGAATTAACTCCTCCAACTATAACACTTACC
+AAAAACTTAAACGTCTACCTTCAGGTGGGAAAGGAGTACAAAAGGTTTGAAGTCTTGCACCTTTGCAGGGCTCACACGAA
+CGGAGATATAGTCGTATGGATACCCGACGAAAAGGTACTCTTCAGCGGGGACATAGTATTTGACGGAAGACTGCCCTTTT
+TAGGCTCTGGGAACTCAAGAACTTGGCTTGTTTGTCTTGACGAAATTCTTAAGATGAAACCAAGAATACTCCTTCCGGGA
+CACGGGGAAGCTTTAATTGGTGAGAAAAAGATAAAAGAAGCGGTAAGCTGGACGAGGAAGTACATAAAGGATCTGAGGGA
+AACTATAAGGAAACTCTACGAAGAGGGTTGTGACGTTGAGTGCGTAAGGGAGAGGATAAACGAGGAGTTGATAAAGATAG
+ATCCCTCTTACGCTCAGGTGCCTGTATTCTTTAACGTGAACCCTGTAAACGCCTACTACGTTTACTTTGAAATAGAAAAC
+GAAATCCTGATGGGAGAGTGA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-308.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-308.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,27 @@
+>*argannot~~~(Bla)cphA2~~~NC_000918:673738-674661
+GTGGGAGGTGCGGTCATGTTAAAAACGCTCTTTGTACTCCTGTTAATCATTAGCACAGCTTTTTCAATGACATTAAAGAA
+AGTTGAAGAAAACCTCTACATGGTGAGAGGAAACGATGGACTTCCTTCCAAGGAAAACAAAGGTTTTATCTCCAACGCCT
+ACGCGGTTTTAACAGAAGAGGGATGGGTGGTTATAGACACCTTAACCACTCCCGAGCTCTCCGAGGAATTTCTGAACCTT
+CTTAAAAAGGTTTCAAACAAACCAGTAATTTACGCGATAGTAACTCACTACCACCTTGACCACTGGTACGGGGCAAAAAC
+CTTCAAGGATAAAGGTGCTAAGGTAATAGCCCACGAAAAACTAAAAGAGTTCTACGATTCTGGCGAAGCCCTTCAAGTTC
+TGGAGGCTCAGAAGAAGAGGTTTAAGGGAGTGCTTGACAGTGTAGAGCTCGTACCTCCCGACGAAGTTGTAAAGGATAAA
+AAGGTTTTAAAAGTCGGTAAAGATGTATTTGAGATTTACGCAATGCCTCCCGCGCACACAAACTCCGACCTCGTAATTTA
+CTGGAAGAACAGGAAAGTCCTTTTTGTAGGGGACCTCGTTTACATAAACAGGATTCCCTTTATGGGGGACAGGAACGCGA
+GTTCCAAAGGGTGGTTAGAGGTTCTGGAAAGATTAAAAGAGTTTGACGCGAGAATGCTCCTCGGTGGGCACAACTATCCC
+ATGAATAAGGATGCGATAGACTGGACCTACAACTACATAAAGTTCGTGAGAGACACGGTAAAGAAGCTAAAAGACGAGGG
+CTACTTCATAGACGAGATAAAGGAGGCGTTTAAAGGAAACCCGTACGAAAAAGTTAAAATGTATGAAGTTTTTCACAACA
+CAAACGTGTGGAAGGTTTACAACGAACTTGATTTAGAACTTTGA
+>consensus
+GTGGGAGGTGCGGTCATGTTAAAAACGCTCTTTGTACTCCTGTTAATCATTAGCACAGCTTTTTCAATGACATTAAAGAA
+AGTTGAAGAAAACCTCTACATGGTGAGAGGAAACGATGGACTTCCTTCCAAGGAAAACAAAGGTTTTATCTCCAACGCCT
+ACGCGGTTTTAACAGAAGAGGGATGGGTGGTTATAGACACCTTAACCACTCCCGAGCTCTCCGAGGAATTTCTGAACCTT
+CTTAAAAAGGTTTCAAACAAACCAGTAATTTACGCGATAGTAACTCACTACCACCTTGACCACTGGTACGGGGCAAAAAC
+CTTCAAGGATAAAGGTGCTAAGGTAATAGCCCACGAAAAACTAAAAGAGTTCTACGATTCTGGCGAAGCCCTTCAAGTTC
+TGGAGGCTCAGAAGAAGAGGTTTAAGGGAGTGCTTGACAGTGTAGAGCTCGTACCTCCCGACGAAGTTGTAAAGGATAAA
+AAGGTTTTAAAAGTCGGTAAAGATGTATTTGAGATTTACGCAATGCCTCCCGCGCACACAAACTCCGACCTCGTAATTTA
+CTGGAAGAACAGGAAAGTCCTTTTTGTAGGGGACCTCGTTTACATAAACAGGATTCCCTTTATGGGGGACAGGAACGCGA
+GTTCCAAAGGGTGGTTAGAGGTTCTGGAAAGATTAAAAGAGTTTGACGCGAGAATGCTCCTCGGTGGGCACAACTATCCC
+ATGAATAAGGATGCGATAGACTGGACCTACAACTACATAAAGTTCGTGAGAGACACGGTAAAGAAGCTAAAAGACGAGGG
+CTACTTCATAGACGAGATAAAGGAGGCGTTTAAAGGAAACCCGTACGAAAAAGTTAAAATGTATGAAGTTTTTCACAACA
+CAAACGTGTGGAAGGTTTACAACGAACTTGATTTAGAACTTTGA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/arg-annot.90/cluster-309.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/arg-annot.90/cluster-309.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,45 @@
+>*argannot~~~(Col)Mcr-1~~~KP347127:22413-24038
+ATGATGCAGCATACTTCTGTGTGGTACCGACGCTCGGTCAGTCCGTTTGTTCTTGTGGCGAGTGTTGCCGTTTTCTTGAC
+CGCGACCGCCAATCTTACCTTTTTTGATAAAATCAGCCAAACCTATCCCATCGCGGACAATCTCGGCTTTGTGCTGACGA
+TCGCTGTCGTGCTCTTTGGCGCGATGCTACTGATCACCACGCTGTTATCATCGTATCGCTATGTGCTAAAGCCTGTGTTG
+ATTTTGCTATTAATCATGGGCGCGGTGACCAGTTATTTTACTGACACTTATGGCACGGTCTATGATACGACCATGCTCCA
+AAATGCCCTACAGACCGACCAAGCCGAGACCAAGGATCTATTAAACGCAGCGTTTATCATGCGTATCATTGGTTTGGGTG
+TGCTACCAAGTTTGCTTGTGGCTTTTGTTAAGGTGGATTATCCGACTTGGGGCAAGGGTTTGATGCGCCGATTGGGCTTG
+ATCGTGGCAAGTCTTGCGCTGATTTTACTGCCTGTGGTGGCGTTCAGCAGTCATTATGCCAGTTTCTTTCGCGTGCATAA
+GCCGCTGCGTAGCTATGTCAATCCGATCATGCCAATCTACTCGGTGGGTAAGCTTGCCAGTATTGAGTATAAAAAAGCCA
+GTGCGCCAAAAGATACCATTTATCACGCCAAAGACGCGGTACAAGCAACCAAGCCTGATATGCGTAAGCCACGCCTAGTG
+GTGTTCGTCGTCGGTGAGACGGCACGCGCCGATCATGTCAGCTTCAATGGCTATGAGCGCGATACTTTCCCACAGCTTGC
+CAAGATCGATGGCGTGACCAATTTTAGCAATGTCACATCGTGCGGCACATCGACGGCGTATTCTGTGCCGTGTATGTTCA
+GCTATCTGGGCGCGGATGAGTATGATGTCGATACCGCCAAATACCAAGAAAATGTGCTGGATACGCTGGATCGCTTGGGC
+GTAAGTATCTTGTGGCGTGATAATAATTCGGACTCAAAAGGCGTGATGGATAAGCTGCCAAAAGCGCAATTTGCCGATTA
+TAAATCCGCGACCAACAACGCCATCTGCAACACCAATCCTTATAACGAATGCCGCGATGTCGGTATGCTCGTTGGCTTAG
+ATGACTTTGTCGCTGCCAATAACGGCAAAGATATGCTGATCATGCTGCACCAAATGGGCAATCACGGGCCTGCGTATTTT
+AAGCGATATGATGAAAAGTTTGCCAAATTCACGCCAGTGTGTGAAGGTAATGAGCTTGCCAAGTGCGAACATCAGTCCTT
+GATCAATGCTTATGACAATGCCTTGCTTGCCACCGATGATTTCATCGCTCAAAGTATCCAGTGGCTGCAGACGCACAGCA
+ATGCCTATGATGTCTCAATGCTGTATGTCAGCGATCATGGCGAAAGTCTGGGTGAGAACGGTGTCTATCTACATGGTATG
+CCAAATGCCTTTGCACCAAAAGAACAGCGCAGTGTGCCTGCATTTTTCTGGACGGATAAGCAAACTGGCATCACGCCAAT
+GGCAACCGATACCGTCCTGACCCATGACGCGATCACGCCGACATTATTAAAGCTGTTTGATGTCACCGCGGACAAAGTCA
+AAGACCGCACCGCATTCATCCGCTGA
+>consensus
+ATGATGCAGCATACTTCTGTGTGGTACCGACGCTCGGTCAGTCCGTTTGTTCTTGTGGCGAGTGTTGCCGTTTTCTTGAC
+CGCGACCGCCAATCTTACCTTTTTTGATAAAATCAGCCAAACCTATCCCATCGCGGACAATCTCGGCTTTGTGCTGACGA
+TCGCTGTCGTGCTCTTTGGCGCGATGCTACTGATCACCACGCTGTTATCATCGTATCGCTATGTGCTAAAGCCTGTGTTG
+ATTTTGCTATTAATCATGGGCGCGGTGACCAGTTATTTTACTGACACTTATGGCACGGTCTATGATACGACCATGCTCCA
+AAATGCCCTACAGACCGACCAAGCCGAGACCAAGGATCTATTAAACGCAGCGTTTATCATGCGTATCATTGGTTTGGGTG
+TGCTACCAAGTTTGCTTGTGGCTTTTGTTAAGGTGGATTATCCGACTTGGGGCAAGGGTTTGATGCGCCGATTGGGCTTG
+ATCGTGGCAAGTCTTGCGCTGATTTTACTGCCTGTGGTGGCGTTCAGCAGTCATTATGCCAGTTTCTTTCGCGTGCATAA
+GCCGCTGCGTAGCTATGTCAATCCGATCATGCCAATCTACTCGGTGGGTAAGCTTGCCAGTATTGAGTATAAAAAAGCCA
+GTGCGCCAAAAGATACCATTTATCACGCCAAAGACGCGGTACAAGCAACCAAGCCTGATATGCGTAAGCCACGCCTAGTG
+GTGTTCGTCGTCGGTGAGACGGCACGCGCCGATCATGTCAGCTTCAATGGCTATGAGCGCGATACTTTCCCACAGCTTGC
+CAAGATCGATGGCGTGACCAATTTTAGCAATGTCACATCGTGCGGCACATCGACGGCGTATTCTGTGCCGTGTATGTTCA
+GCTATCTGGGCGCGGATGAGTATGATGTCGATACCGCCAAATACCAAGAAAATGTGCTGGATACGCTGGATCGCTTGGGC
+GTAAGTATCTTGTGGCGTGATAATAATTCGGACTCAAAAGGCGTGATGGATAAGCTGCCAAAAGCGCAATTTGCCGATTA
+TAAATCCGCGACCAACAACGCCATCTGCAACACCAATCCTTATAACGAATGCCGCGATGTCGGTATGCTCGTTGGCTTAG
+ATGACTTTGTCGCTGCCAATAACGGCAAAGATATGCTGATCATGCTGCACCAAATGGGCAATCACGGGCCTGCGTATTTT
+AAGCGATATGATGAAAAGTTTGCCAAATTCACGCCAGTGTGTGAAGGTAATGAGCTTGCCAAGTGCGAACATCAGTCCTT
+GATCAATGCTTATGACAATGCCTTGCTTGCCACCGATGATTTCATCGCTCAAAGTATCCAGTGGCTGCAGACGCACAGCA
+ATGCCTATGATGTCTCAATGCTGTATGTCAGCGATCATGGCGAAAGTCTGGGTGAGAACGGTGTCTATCTACATGGTATG
+CCAAATGCCTTTGCACCAAAAGAACAGCGCAGTGTGCCTGCATTTTTCTGGACGGATAAGCAAACTGGCATCACGCCAAT
+GGCAACCGATACCGTCCTGACCCATGACGCGATCACGCCGACATTATTAAAGCTGTTTGATGTCACCGCGGACAAAGTCA
+AAGACCGCACCGCATTCATCCGCTGA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/argannot_light-150bp-10000-reads.fq.gz
Binary file test-data/argannot_light-150bp-10000-reads.fq.gz has changed
diff -r 000000000000 -r 7af6f7dafd22 test-data/bla-b7-150bp-5x.fq
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/bla-b7-150bp-5x.fq	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,96 @@
+@SYN_0_299_448_0_+_8299_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TGATAGAGCCGGAGGTCTTGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAAGAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAAGACTGA
++
+8;9=898:;@>B9DAD89AB;C?EDEH<?B8AE9AD>?ACBC8>:@98=CFB?A;A=?9>:D;@BAAE>>@8A<>@=<AE=G>:C@@8;;8B=>>D@E?88=;CA89::;?ABD>=@8:><8=C=E?@888?@A8D<8C@9=8?888888
+@SYN_1_189_338_0_+_8189_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+GTGGTTATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACAGACGAGATTTATAAAAAGCACGGTAAGAAAGTTATCATGAACATTGCGACCCACTCTCATGATGATAGAGCCGGAGGTCTTGAATATTTTGGTAAACTAGGT
++
+9@@==?=@>@CDCE=FIEEGFG@HEEADDHECDDFHCHCEH><DEBFFEEGEAGEEHDCABFFCDI9@EAF:EDB?GGAEEBCCEEABDHDBEHFEGCBABEEFF>>BCBDGGCACCAFH?DIDBAB=G=>E@FGA9H>=??9:@B9999
+@SYN_2_428_577_0_-_8428_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+CCAATAAACCCAAGGTCTTTCGAATCACCACTTTTTACAATGCAGCCTCCTACTAATACTTTGTCTTTAGGGAACCACACAACCACATTATCTGCTGTATGACCTTTTCCCGGATAATAGACCTGAAACTCAGTCTTTCCTACTTTAAAA
++
+334333455:795583>>=?38687<3>3:67?96:5?:::>83:83;7:::3=3?7=539@<=943>A6=>:93=38:8<753:<:;6:9?@:33:>?><639937=<>9;4<7;:9B?6:6;3>8;63=967:47?3<:334393333
+@SYN_3_167_316_0_+_8167_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TATGGTAACCGATAAAGGAATAGTGGTTATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACAGACGAGATTTATAAAAAGCACGGTAAGAAAGTTATCATGAACATTGCGACCCACTCTCATGATGATAGAGCCGGAGGTCT
++
+6:6969:69?:;6=?;A?8<?:D8>6@>8;;EC<@B<?=7BA:8:6B?A9A=<8>A<DAF?AC>C>EB=;::BBB8@7>9BB?A88;A==;8@@88?BB;CFB@><@B=A>8><88@DB@?<<<B?8=>?E?=?>B@;86<<?6866866
+@SYN_4_416_565_0_-_8416_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+AGGTCTTTCGAATCACCACTTTTTACAATGCAGCCTCCTACTAATACTTTGTCTTTAGGGAACCACACAACCACATTATCTGCTGTATGACCTTTTCCCGGATAATAGACCTGAAACTCAGTCTTTCCTACTTTAAAAGATTTATTATTA
++
+141211132143:7737659>4?:=76<<1>;;6:<25;;:9;2=29:7<:=457;63=1896=27;>:<16=129818=::16737688<39287=:<783787<76;3?>864<815=11<813:713333;5875898425111111
+@SYN_5_354_503_0_-_8354_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+CCACACAACCACATTATCTGCTGTATGACCTTTTCCCGGATAATAGACCTGAAACTCAGTCTTTCCTACTTTAAAAGATTTATTATTATCAAAAGTGTACTTTGCTCTTGGCTTATTCTCTTTTGCTAAAATAGAATCTGTCATTTTAGT
++
+66666<66>;:>6=6@9>>=;C<;==8A=A6CBAB6C66=8A:6:6?=;<D:9=;<66D<<66:=8<=6B6?6>@6AC666;A;68>>6666B;696<6;8:=6;686:6>=668;>88B77>A8=666=9D6=6666666666766666
+@SYN_6_253_402_0_-_8253_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TTGCTCTTGGCTTATTCTCTTTTGCTAAAATAGAATCTGTCATTTTAGTAGAATAAGTTTTTGCACCTAGTTTACCAAAATATTCAAGACCTCCGGCTCTATCATCATGAGAGTGGGTCGCAATGTTCATGATAACTTTCTTACCGTGCT
++
+6<:;9<;>>@?BA?CCDBBBDCCBBAD7BC@CCD@CCDDA<BABBAAC@@CB@@?A?A@CC@@DB@@BBB>????C@>BB@CAAAAA?@A>?C?ACB?CB=BBAC@AB=B?=<@DDDAB>B?BA;B@>9<>A?>B>;=>9:<;;:56445
+@SYN_7_192_341_0_-_8192_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TGCACCTAGTTTACCAAAATATTCAAGACCTCCGGCTCTATCATCATGAGAGTGGGTCGCAATGTTCATGATAACTTTCTTACCGTGCTTTTTATAAATCTCGTCTGTAAAACTTTTAAATTTATCTTCTCCCCATGGAGAGTCTATAAC
++
+48222:222976988<;5@74=:<222:;<=666>>86=74866=27=5@@<:A;:;:>42:472697B@?3=5665339?36978<928>4==22@:><9;7266427389:8?6529<7?79:92:>774:8<492=;3222222225
+@SYN_8_488_637_0_+_8488_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TAATGTGGTTGTGTGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGTGGTGATTCGAAAGACCTTGGGTTTATTGGAGAAGCTTATGTAAACGACTGGACACAGTCCATACACAATATTCAGCAGAAATTTCCCGA
++
+4=<6;:<>>>AA@A@BCABBAAAABBACBB<@ACCBCCADABAB?AD<BAA@=?BBACA?DA5>C?CA?A>?DBABB>@@:B@@B??><D>B>@@A<9>@@?B>?>=?;?@?7@>?>:AC>?AC>??@AC<?;@C9?>>?<999::6549
+@SYN_9_372_521_0_-_8372_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TACTTTGTCTTTAGGGAACCACACAACCACATTATCTGCTGTATGACCTTTTCCCGGATAATAGACCTGAAACTCAGTCTTTCCTACTTTAAAAGATTTATTATTATCAAAAGTGTACTTTGCTCTTGGCTTATTCTCTTTTGCTAAAAT
++
+558884===4>?AA@CCABBBABBBCADABCDAA@C:A@A@D??>@ACAB<??A@??@@@AC@<<CA@@C?C??@>>BD?B;BAA?@=?@@B;9?>>?:B9<??;=@??A>A=?6?89<=:<@;D<:8@<A<C>B?6:546496844444
+@SYN_10_578_727_0_+_8578_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+AGAAGCTTATGTAAACGACTGGACACAGTCCATACACAATATTCAGCAGAAATTTCCCGATGTTCAGTATGTCGTTGCAGGTCATGACGACTGGAAAGATCAAACATCAATACAACATACACTGGATTTAATCAGTGAATATCAACAAAA
++
+8?>>:<A=ABABBEEEDEEDECEDFEFDFCDDFEFFFEEFFCDDDBBDBCCAB;CECBEBABCDE6AD@?D8BBDCBBB?CD@<E@ACDCC@<CEC?DAC=E@BEDC@A=>@?DCEABDC>>A@@=???@C?>@@@:@>7;;:87666:6
+@SYN_11_554_703_0_+_8554_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TTCGAAAGACCTTGGGTTTATTGGAGAAGCTTATGTAAACGACTGGACACAGTCCATACACAATATTCAGCAGAAATTTCCCGATGTTCAGTATGTCGTTGCAGGTCATGACGACTGGAAAGATCAAACATCAATACAACATACACTGGA
++
+77<97>=B;??EC>@AAACCABA@B<AB;?BC?@A<BAFBAA8E?>BA;EBCF@G>B>:B?>BB:E<;:<E=EC;B@BDB?>?@F=F=D@@A9>@>B>GC>=@E@?D;@=A@?@BE;@<A?87><C8A=;F>=@@;=7?<<7777;7;77
+@SYN_12_485_634_0_-_8485_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+GGAAATTTCTGCTGAATATTGTGTATGGACTGTGTCCAGTCGTTTACATAAGCTTCTCCAATAAACCCAAGGTCTTTCGAATCACCACTTTTTACAATGCAGCCTCCTACTAATACTTTGTCTTTAGGGAACCACACAACCACATTATCT
++
+678:9<;;>>?A?AABCABCDCBBCBBABDCABBBBBCC=DADAAC@CCBAACB@@BCAABAAAB@;A<CBCA@DCDB@?BBD@@<B@@DA@ACBBBABDB<BB@BABAD8@BD@B@B@ABB@@@CA9B?DCA@?>=AB=>8;;:?8777
+@SYN_13_288_437_0_+_8288_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+CACTCTCATGATGATAGAGCCGGAGGTCTTGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAAGAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTA
++
+111132178335;<=6<68;6?;6;>:?:?6;@=;=@9?9@96;:;<7;94:9A<89988=7>:8A8:864=85956:6@487:799758?;;>>893992:6=@<:>5:;7;=>;@:;:;;?:71<288?9?5<97;988:14515111
+@SYN_14_77_226_0_-_8077_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TTAAATTTATCTTCTCCCCATGGAGAGTCTATAACCACTATTCCTTTATCGGTTACCATATATACCGCATTAGCCGCATATTTAGTTCCTTTGAAGGTATTATAGGTTGTATAGACGTATAAATTATCTTTTAATTTTTCAATTTTAATA
++
+87==<<>?BABAEE7GDEFFFEDDF7DEFDFFFADCCGFEEEFEGE>EEFEEFBEDCFCCEFFDEDGEBFECDBFBEGEBDFBCEFFCCDDEBBFDCCDA@BFAECCC9ABEB=BECEDBEDECDCEE?GDAEC@EAA@>A:B=>78;>7
+@SYN_15_0_149_0_+_8000_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+ATGAAAGGATTAAAAGGGCTATTGGTTCTGGCTTTAGGTTTTACAGGACTACAGGTTTTTGGGCAACAGAACCCTGATATTAAAATTGAAAAATTAAAAGATAATTTATACGTCTATACAACCTATAATACCTTCAAAGGAACTAAATAT
++
+7756:75>;5:9;>@@AC@@A=<=C@<>?;C8?A;@B?8C@=@>=@>?;8B@CC>?>=CB<D8>@A>9?;@;:86:CC?>6;;<::B???7B=A89C;?<>;@6=B=B?@=A>;@D=?<>;:@;@=8=?<=9<D=<C<;:5:5<=76:95
+@SYN_16_165_314_0_-_8165_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+ACCTCCGGCTCTATCATCATGAGAGTGGGTCGCAATGTTCATGATAACTTTCTTACCGTGCTTTTTATAAATCTCGTCTGTAAAACTTTTAAATTTATCTTCTCCCCATGGAGAGTCTATAACCACTATTCCTTTATCGGTTACCATATA
++
+6258:;97><:5<A=@?>>@<A@A@?>=?>?A>@=AB>=>?=?AA@<@><==?@?;=>A@7@@>;>5>>>A?<>>=AB=@@;A>:A?=A<<??;>9==?:@;:@;@>7=>>===>:?9:=:=A;?=<A<?8:9A:8?@:;8;62524582
+@SYN_17_529_678_0_+_8529_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+GAGGCTGCATTGTAAAAAGTGGTGATTCGAAAGACCTTGGGTTTATTGGAGAAGCTTATGTAAACGACTGGACACAGTCCATACACAATATTCAGCAGAAATTTCCCGATGTTCAGTATGTCGTTGCAGGTCATGACGACTGGAAAGATC
++
+555:75A55:::C7?<><5;BB?=8=655;:8C8@@:B=7B?7A<A;=><B66897:=59>7?95<@;5;5>5C>::9?9755:8AA5:;A855:7>7555=556D55?DA898<558?<@><@5;8A7<5895555555<555>55555
+@SYN_18_401_550_0_+_8401_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+AAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAAGACTGAGTTTCAGGTCTATTATCCGGGAAAAGGTCATACAGCAGATAATGTGGTTGTGTGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGTGG
++
+;786:6>5<=A@8@ABEBCBBDD>DDABDBE@B:@<AACDDABBC=DDCAB?DCABBBABBCDDDA@AA@A@B@AEBBAAA@@>???BABCAB?AAE@?BA@=AAAAAB@DAE=>B9BC@A@A>A=CA=>B@A@CA;C=<=<99<:=;85
+@SYN_19_493_642_0_+_8493_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TGGTTGTGTGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGTGGTGATTCGAAAGACCTTGGGTTTATTGGAGAAGCTTATGTAAACGACTGGACACAGTCCATACACAATATTCAGCAGAAATTTCCCGATGTTC
++
+556655;;9:@9@@=?;;=?:BC@;@@=>@=8@=<9:;79;98;?:>B:A;>?>;@C??:>9AC>;;@5>=CA;;<5?;79>:A9:;BBB>8D<5D5C788?<5?<55=C;?59<7:>;56;@5<@;=A9>78<5=@599;=57=55558
+@SYN_20_119_268_0_-_8119_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+ACTTTCTTACCGTGCTTTTTATAAATCTCGTCTGTAAAACTTTTAAATTTATCTTCTCCCCATGGAGAGTCTATAACCACTATTCCTTTATCGGTTACCATATATACCGCATTAGCCGCATATTTAGTTCCTTTGAAGGTATTATAGGTT
++
+9<;98@@<A<BCDBDCCBCCDECBFACBDFCHDHCEGC@DHDC?>EDFCDBADEE9=@BBDBD=E;E?CBDE>@AE;CDF@>=CAC=EG<<EAG>@F?BEADD>@DE?;9@=E8EE?=E=BFB?B>=?FA>;?F;@<>;@8>9<888888
+@SYN_21_187_336_0_+_8187_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TAGTGGTTATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACAGACGAGATTTATAAAAAGCACGGTAAGAAAGTTATCATGAACATTGCGACCCACTCTCATGATGATAGAGCCGGAGGTCTTGAATATTTTGGTAAACTAG
++
+3343433=5=7;4A=:447:>4?:=;<93<<@9=@6:>:94==A33=9<7;99A39:C39584<?4:3;6?83:3857933338?<35:4<=:79:<?48==96;39@3A36363;B;44C33>536;83=933;333737833336333
+@SYN_22_200_349_0_-_8200_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+TAAGTTTTTGCACCTAGTTTACCAAAATATTCAAGACCTCCGGCTCTATCATCATGAGAGTGGGTCGCAATGTTCATGATAACTTTCTTACCGTGCTTTTTATAAATCTCGTCTGTAAAACTTTTAAATTTATCTTCTCCCCATGGAGAG
++
+767666:6=A<>@>><C=:?B?>DCAC9;E7C>@<?=>E6A;F;>=D<;@D:=A?B676=A?:E@6;?A@?>6;?866=@<8<@=9:666D<9>8<6:>6?<@=6@A;=D:66CC6?6<=9>>=;69;B86998=9:=76;6666666;6
+@SYN_23_198_347_0_+_8198_1_._argannot~~~(Bla)B-7~~~AF189304:1-747$(Bla)B-7 1:
+GACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACAGACGAGATTTATAAAAAGCACGGTAAGAAAGTTATCATGAACATTGCGACCCACTCTCATGATGATAGAGCCGGAGGTCTTGAATATTTTGGTAAACTAGGTGCAAAAACT
++
+11421;1551676<:485;?6=7492>541==47951815:;;67:11?68<8;73;77:4=754;74:=217:7><<9544<;A2;5448>8?325?;918121;35?17=744:611<;668;7566;12322211231411111141
diff -r 000000000000 -r 7af6f7dafd22 test-data/groot.log
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/groot.log	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,77 @@
+2024/10/15 11:32:06 i am groot (version 1.1.2)
+2024/10/15 11:32:06 starting the index subcommand
+2024/10/15 11:32:06 checking parameters...
+2024/10/15 11:32:06 	directory containing MSA files: arg-annot.90
+2024/10/15 11:32:06 	number of MSA files: 12
+2024/10/15 11:32:06 	processors: 1
+2024/10/15 11:32:06 	k-mer size: 41
+2024/10/15 11:32:06 	sketch size: 21
+2024/10/15 11:32:06 	graph window size: 150
+2024/10/15 11:32:06 	num. partitions: 8
+2024/10/15 11:32:06 	max. K: 4
+2024/10/15 11:32:06 	max. sketch span: 30
+2024/10/15 11:32:06 initialising indexing pipeline...
+2024/10/15 11:32:06 	initialising the processes
+2024/10/15 11:32:06 	connecting data streams
+2024/10/15 11:32:06 	number of processes added to the indexing pipeline: 3
+2024/10/15 11:32:06 creating graphs, sketching traversals and indexing...
+2024/10/15 11:32:07 	number of groot graphs built: 12
+2024/10/15 11:32:07 		graphs sketched: 12
+2024/10/15 11:32:07 		graph windows processed: 35387
+2024/10/15 11:32:07 		mean approximate distinct sketches per graph: 29.20%
+2024/10/15 11:32:07 	number of sketches added to the LSH Ensemble index: 5155
+2024/10/15 11:32:07 writing index files in "grootIndex"...
+2024/10/15 11:32:07 finished in 685.70958ms
+2024/10/15 11:32:39 i am groot (version 1.1.2)
+2024/10/15 11:32:39 starting the sketch subcommand
+2024/10/15 11:32:39 checking parameters...
+2024/10/15 11:32:39 terminated
+
+ERROR --> file does not exist: argannot-150bp-10000-reads.fq.gz
+
+2024/10/15 11:33:04 i am groot (version 1.1.2)
+2024/10/15 11:33:04 starting the sketch subcommand
+2024/10/15 11:33:04 checking parameters...
+2024/10/15 11:33:04 	minimum k-mer coverage: 1
+2024/10/15 11:33:04 	processors: 1
+2024/10/15 11:33:04 	input file: argannot_light-150bp-10000-reads.fq.gz
+2024/10/15 11:33:04 loading the index information...
+2024/10/15 11:33:04 	k-mer size: 41
+2024/10/15 11:33:04 	sketch size: 21
+2024/10/15 11:33:04 	window size used in indexing: 150
+2024/10/15 11:33:04 loading the graphs...
+2024/10/15 11:33:04 	number of variation graphs: 12
+2024/10/15 11:33:04 rebuilding the LSH Ensemble...
+2024/10/15 11:33:04 	containment threshold: 0.99
+2024/10/15 11:33:04 initialising alignment pipeline...
+2024/10/15 11:33:04 	initialising the processes
+2024/10/15 11:33:04 	connecting data streams
+2024/10/15 11:33:04 	number of processes added to the alignment pipeline: 5
+2024/10/15 11:33:04 now streaming reads...
+2024/10/15 11:33:04 	number of reads received from input: 5000
+2024/10/15 11:33:04 	mean read length: 150
+2024/10/15 11:33:04 	number of reads sketched: 5000
+2024/10/15 11:33:04 	total number of unmapped reads: 4873
+2024/10/15 11:33:04 	total number of mapped reads: 127
+2024/10/15 11:33:04 		mapped to one graph: 127
+2024/10/15 11:33:04 		mapped to multiple graphs: 0
+2024/10/15 11:33:04 	total number of exact alignments: 954
+2024/10/15 11:33:04 processing graphs...
+2024/10/15 11:33:04 	total number of k-mers projected onto graphs: 10890
+2024/10/15 11:33:04 	graph 7 has 4 remaining paths after weighting and pruning
+2024/10/15 11:33:04 	- [*argannot~~~(Bla)cfxA2~~~AF504910:1-966]
+2024/10/15 11:33:04 	- [argannot~~~(Bla)cfxA4~~~AY769933:1-966]
+2024/10/15 11:33:04 	- [argannot~~~(Bla)cfxA5~~~AY769934:28-993]
+2024/10/15 11:33:04 	- [argannot~~~(Bla)cfxA~~~U38243:150-1115]
+2024/10/15 11:33:04 	total number of graphs pruned: 12
+2024/10/15 11:33:04 	total number of graphs remaining: 1
+2024/10/15 11:33:04 	total number of possible haplotypes found: 4
+2024/10/15 11:33:04 saving graphs...
+2024/10/15 11:33:04 finished in 223.277576ms
+2024/10/15 11:33:15 i am groot (version 1.1.2)
+2024/10/15 11:33:15 starting the report subcommand
+2024/10/15 11:33:15 checking parameters...
+2024/10/15 11:33:15 	BAM file: groot.bam
+2024/10/15 11:33:15 	coverage cutoff: 0.97
+2024/10/15 11:33:15 	processors: 1
+2024/10/15 11:33:15 finished
diff -r 000000000000 -r 7af6f7dafd22 test-data/groot_database.loc
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/groot_database.loc	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,10 @@
+# Tab separated with 4 columns:
+# value : unique value used to generate the database path
+# name: name of the database generate using the date and version of the bakta database 
+# dbkey : name of the database generate using the date and version of the bakta database
+# bakta_version : tool version to filter database version depending of the tool
+# path : final oath to bakta database on galaxy
+# value, name, dbkey, path
+# eg.
+resfinder.90	resfinder (90 percent identity)	${__HERE__}/resfinder.90	1.1.2
+arg-annot.90	arg-annot (90 percent identity)	${__HERE__}/arg-annot.90	1.1.2
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/._.DS_Store
Binary file test-data/resfinder.90/._.DS_Store has changed
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/._cluster-113.msa
Binary file test-data/resfinder.90/._cluster-113.msa has changed
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-2.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-2.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,15 @@
+>*ARR-4_1_EF660562
+ATGACGAATGACTGGATTCCCACTTCGCATGACAACTGCTCGCAAGTAGCGGGGCCGTTCTATCACGGCACCAAAGCCAA
+ACTCACGGTTGGTGACTTGCTTTCCCCAGGACACCCGTCTCACTTTGAGCAAGGTCGCAAGCTCAAACACATCTACTTTG
+CCGCCCTGATGGAACCAGCCATCTGGGGAGCGGAGCTTGCGATGTCGCTGTCAAGCCTAGAGGGGCGCGGCCACATCTAC
+ATCGTTGAACCGCTCGGCCCATTTGAGGACGACCCGAACCTTACAAACAAGAAATTCCCGGGAAATCCAACCAAGTCCTA
+TCGCACCACTGAGCCGCTGCGGATTGTTGGGATCGTAGAAGACTGGCAAGGCCACTCACCGGAGGTGTTACAGGGCATGT
+TGGCGTCTCTGGAGGATCTTCAGCGTCGTGGCCTCGCCATCATTGAGGACTAA
+>consensus
+ATGACGAATGACTGGATTCCCACTTCGCATGACAACTGCTCGCAAGTAGCGGGGCCGTTCTATCACGGCACCAAAGCCAA
+ACTCACGGTTGGTGACTTGCTTTCCCCAGGACACCCGTCTCACTTTGAGCAAGGTCGCAAGCTCAAACACATCTACTTTG
+CCGCCCTGATGGAACCAGCCATCTGGGGAGCGGAGCTTGCGATGTCGCTGTCAAGCCTAGAGGGGCGCGGCCACATCTAC
+ATCGTTGAACCGCTCGGCCCATTTGAGGACGACCCGAACCTTACAAACAAGAAATTCCCGGGAAATCCAACCAAGTCCTA
+TCGCACCACTGAGCCGCTGCGGATTGTTGGGATCGTAGAAGACTGGCAAGGCCACTCACCGGAGGTGTTACAGGGCATGT
+TGGCGTCTCTGGAGGATCTTCAGCGTCGTGGCCTCGCCATCATTGAGGACTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-21.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-21.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,29 @@
+>*VanB_1_AF192329
+ATGAATAGAATAAAAGTCGCAATCATCTTCGGCGGTTGCTCGGAGGAACATGATGTGTCGGTAAAATCCGCAATAGAAAT
+TGCTGCGAACATTAATACTGAAAAATTCGATCCGCACTACATCGGAATTACAAAAAACGGCGTATGGAAGCTATGCAAGA
+AGCCATGTACGGAATGGGAAGCCGACAGTCTCCCCGCCATACTCTCCCCGGATAGGAAAACGCATGGGCTGCTTGTCATG
+AAAGAAAGCGAATACGAAACACGGCGTATTGATGTGGCTTTCCCGGTTTTGCATGGCAAATGCGGGGAGGATGGTGCGAT
+ACAGGGTCTGTTTGAATTGTCTGGTATCCCCTATGTAGGCTGCGATATTCAAAGCTCCGCAGCTTGCATGGACAAATCAC
+TGGCCTACATTCTTACAAAAAATGCGGGCATCGCCGTTCCCGAATTTCAAATGATTGATAAAGGTGACAAGCCGGAGGCG
+GGTGCGCTTACCTACCCTGTCTTTGTGAAGCCGGCACGGTCAGGTTCGTCCTTTGGCGTAACCAAAGTAAACGGTACGGA
+AGAACTTAACGCTGCGATAGAAGCGGCAGGACAATATGATGGAAAAATCTTAATTGAGCAAGCGATTTCGGGCTGTGAGG
+TCGGGTGTGCGGTCATGGGGAACGAGGATGATTTGATTGTCGGCGAAGTGGATCAAATCCGGCTGAGCCACGGTATCTTC
+CGCATCCATCAGGAAAACGAGCCGGAAAAAGGCTCAGAAAATGCGATGATTACAGTTCCCGCAGACATTCCGGTCGAGGA
+ACGAAATCGGGTGCAGGAAACGGCAAAGAAAGTATATCGGGTGCTTGGATGCAGAGGGCTTGCCCGTGTTGATCTTTTTT
+TGCAGGAGGATGGCGGCATCGTTCTAAATGAGGTCAATACCCTGCCTGGTTTTACATCGTACAGCCGCTACCCACGTATG
+GTGGCCGCCGCAGGAATCACGCTTCCTGCACTGATTGACAGCCTGATTACATTGGCGTTAAAGAGGTGA
+>consensus
+ATGAATAGAATAAAAGTCGCAATCATCTTCGGCGGTTGCTCGGAGGAACATGATGTGTCGGTAAAATCCGCAATAGAAAT
+TGCTGCGAACATTAATACTGAAAAATTCGATCCGCACTACATCGGAATTACAAAAAACGGCGTATGGAAGCTATGCAAGA
+AGCCATGTACGGAATGGGAAGCCGACAGTCTCCCCGCCATACTCTCCCCGGATAGGAAAACGCATGGGCTGCTTGTCATG
+AAAGAAAGCGAATACGAAACACGGCGTATTGATGTGGCTTTCCCGGTTTTGCATGGCAAATGCGGGGAGGATGGTGCGAT
+ACAGGGTCTGTTTGAATTGTCTGGTATCCCCTATGTAGGCTGCGATATTCAAAGCTCCGCAGCTTGCATGGACAAATCAC
+TGGCCTACATTCTTACAAAAAATGCGGGCATCGCCGTTCCCGAATTTCAAATGATTGATAAAGGTGACAAGCCGGAGGCG
+GGTGCGCTTACCTACCCTGTCTTTGTGAAGCCGGCACGGTCAGGTTCGTCCTTTGGCGTAACCAAAGTAAACGGTACGGA
+AGAACTTAACGCTGCGATAGAAGCGGCAGGACAATATGATGGAAAAATCTTAATTGAGCAAGCGATTTCGGGCTGTGAGG
+TCGGGTGTGCGGTCATGGGGAACGAGGATGATTTGATTGTCGGCGAAGTGGATCAAATCCGGCTGAGCCACGGTATCTTC
+CGCATCCATCAGGAAAACGAGCCGGAAAAAGGCTCAGAAAATGCGATGATTACAGTTCCCGCAGACATTCCGGTCGAGGA
+ACGAAATCGGGTGCAGGAAACGGCAAAGAAAGTATATCGGGTGCTTGGATGCAGAGGGCTTGCCCGTGTTGATCTTTTTT
+TGCAGGAGGATGGCGGCATCGTTCTAAATGAGGTCAATACCCTGCCTGGTTTTACATCGTACAGCCGCTACCCACGTATG
+GTGGCCGCCGCAGGAATCACGCTTCCTGCACTGATTGACAGCCTGATTACATTGGCGTTAAAGAGGTGA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-210.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-210.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,25 @@
+>*blaACI-1_1_AJ007350
+ATGAAGAAAttttgttttttgtttttGATAATCTGTGGCTTGATGGTTTTCTGCCTTCAGGATTGTCAAGCGCGGCAGAA
+ATTAAATCTTGCTGATCTGGAAAATAAATATAACGCCGTGATTGGTGTTTACGCCGTTGACATGGAGAATGGaaaaaaaa
+TTTGCTACAAACCTGATACGCGTTTTTCCTACTGCTCGACACACAAAGTTTTTACGGCTGCAGAATTGCTAAGACAAAAA
+AATACCTCCGATTTGAATGAAATTCGTAAGTTTTCGGCGGAAGATATTTTGTCCTACGCGCCAATCACCAAAGACCATGT
+TGCTGATGGCATGACGCTGGCGGAAATTTGTTCGGCATCGCTCAGGTGGAGTGACAACACGGCGGCAAATTTAATTTTGC
+AGGAGATCGGCGGCGTGGAAAATTTCAAGGTGGCACTTAAAAATATTGGCGACAAAACTACCAAACCTGCGCGAAATGAA
+CCTGAACTTAATCTTTTCAATCCAAAAGATAATCGTGATACTAGCACGCCGAGACAGATGGTAAAAAATTTGCAAGTCTA
+TATATTCGGCGATATTTTGAGCGACGACAAGAAAAAACTGCTGATTGATTGGATGAGCGACAATTCCATAACCGACACGC
+TTATCAAGGCAGAAACTCCGCAAGGTTGGAAAGTTATCGACAAGAGCGGTTCAGGCGATTATGGGGCGCGGAATGATATT
+GCCGTGATTTATCCGCCCAATCGCAAACCCATTGTCATGGCGATAATGTCGCGCCGCACGGAAAAAAATGCAAAATCTGA
+CGACGCTATGATTGCGGAGGCGGCAAAACGAATTTTTGATAATTTAGTATTTTAA
+>consensus
+ATGAAGAAATTTTGTTTTTTGTTTTTGATAATCTGTGGCTTGATGGTTTTCTGCCTTCAGGATTGTCAAGCGCGGCAGAA
+ATTAAATCTTGCTGATCTGGAAAATAAATATAACGCCGTGATTGGTGTTTACGCCGTTGACATGGAGAATGGAAAAAAAA
+TTTGCTACAAACCTGATACGCGTTTTTCCTACTGCTCGACACACAAAGTTTTTACGGCTGCAGAATTGCTAAGACAAAAA
+AATACCTCCGATTTGAATGAAATTCGTAAGTTTTCGGCGGAAGATATTTTGTCCTACGCGCCAATCACCAAAGACCATGT
+TGCTGATGGCATGACGCTGGCGGAAATTTGTTCGGCATCGCTCAGGTGGAGTGACAACACGGCGGCAAATTTAATTTTGC
+AGGAGATCGGCGGCGTGGAAAATTTCAAGGTGGCACTTAAAAATATTGGCGACAAAACTACCAAACCTGCGCGAAATGAA
+CCTGAACTTAATCTTTTCAATCCAAAAGATAATCGTGATACTAGCACGCCGAGACAGATGGTAAAAAATTTGCAAGTCTA
+TATATTCGGCGATATTTTGAGCGACGACAAGAAAAAACTGCTGATTGATTGGATGAGCGACAATTCCATAACCGACACGC
+TTATCAAGGCAGAAACTCCGCAAGGTTGGAAAGTTATCGACAAGAGCGGTTCAGGCGATTATGGGGCGCGGAATGATATT
+GCCGTGATTTATCCGCCCAATCGCAAACCCATTGTCATGGCGATAATGTCGCGCCGCACGGAAAAAAATGCAAAATCTGA
+CGACGCTATGATTGCGGAGGCGGCAAAACGAATTTTTGATAATTTAGTATTTTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-211.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-211.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,225 @@
+>*blaACT-10_1_JN848330
+---ATGATGAAAAAATCCGTTTGCTGCGCCCTGCTGCTCAGCACCTCCTGCTCGGTATTGGCTGCCCCGATGTCAGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAAAGCTCAGGCCATTCCGGGTATAGCGGTGGCGGTGA
+TTTATCAGGGTCAGCCGCACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAATAAACCTGTCACCCCACAAACCTTA
+TTCGAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTACTCGGCGGCGATGCCATTGCTCGGGGTGAAATATCGCTGGG
+CGATCCGGTGACAAAATACTGGCCTGAGCTGACAGGCAAGCAGTGGAAGGGGATCCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGAGGTTTGCCGTTACAGGTACCGGATGAGGTCACGGATAACGCCTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCCAACGCCAGCATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATAACGACGCGGGTCTTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTTCCGA
+AAACGGAAGAGGCGCATTACGCCTGGGGATACCGCGACGGTAAGGCGGTACACGTTTCGCCAGGAATGCTGGACGCTGAA
+GCCTATGGCGTAAAAACCAACGTGAAGGATATGGCAAGCTGGGTGATGGTCAACATGAAGCCGGACTCGCTTGAGGATAG
+TTCACTCAGGAAAGGCTTTACCCTGGCGCAGTCTCGCTACTGGCGCGTGGGTGCCATGTATCAGGGGTTAGGCTGGGAAA
+TGCTTAACTGGCCGGTCGATGCCAAAACCGTGGTTGAAGGTAGCGACAATAAGGTGGCGCTGGCACCGTTGCCTGCGAGA
+GAAGTGAATCCACCGGCGCCCCCGGTCAACGCATCCTGGGTCCATAAAACCGGCTCTACCGGCGGGTTTGGCAGCTACGT
+GGCGTTTATTCCCGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCCAACCCGGCACGCGTTGAGGCGG
+CATACCGTATCCTCGACGCGCTGCAGTAA
+>blaACT-1_1_U58495
+ATGATGATGACTAAATCCCTTTGCTGCGCCCTGCTGCTCAGCACCTCCTGCTCGGTATTGGCTACCCCGATGTCAGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGGACCGTTACGCCGCTGATGAAAGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTGA
+TTTATGAGGGTCAGCCGCACTACTTCACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCTGTCACTCCACAAACCTTG
+TTCGAACTGGGTTCTATAAGTAAAACCTTCACCGGCGTACTCGGTGGCGATGCCATTGCTCGCGGTGAAATATCGCTGGG
+CGATCCGGTGACAAAATACTGGCCTGAGCTGACAGGCAAGCAGTGGCAGGGGATCCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGAGGTTTGCCGTTACAGGTACCGGATGAGGTCAAGGATAACGCCTCTCTGTTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCCAATGCCAGCATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATAACGACGCGGGTCTTTAAGCCGCTCAAGCTGGACCATACGTGGATTAACGTTCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGCGACGGTAAAGCAGTACACGTTTCGCCAGGAATGCTGGACGCTGAA
+GCCTATGGCGTAAAAACCAACGTGCAGGATATGGCAAGCTGGGTGATGGTCAACATGAAGCCGGACTCCCTTCAGGATAA
+TTCACTCAGGAAAGGCCTTACCCTGGCGCAGTCTCGCTACTGGCGCGTGGGGGCCATGTATCAGGGGTTAGGCTGGGAAA
+TGCTTAACTGGCCGGTCGATGCCAAAACCGTGGTTGAAGGTAGCGACAATAAGGTTGCACTGGCACCGCTGCCTGCGAGA
+GAAGTGAATCCACCAGCGCCCCCGGTCAACGCATCCTGGGTCCATAAAACAGGCTCTACCGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGTATTGTGATGCTGGCAAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATTTTGAGCGCGCTGTAG---
+>blaACT-2_1_AM076977
+ATGATGATGACTAAATCCCTTTGCTGCGCCCTGCTGCTCAGCACCTCCTGCTCGGTATTGGCTACCCCGATGTCAGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGGACCGTTACGCCGCTGATGAAAGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTGA
+TTTATGAGGGTCAGCCGCACTACTTCACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCTGTCACTCCACAAACCTTG
+TTCGAACTGGGTTCTATAAGTAAAACCTTCACCGGCGTACTCGGTGGCGATGCCATTGCTCGCGGTGAAATATCGCTGGG
+CGATCCGGTGACAAAATACTGGCCTGAGCTGACAGGCAAGCAGTGGCAGGGGATCCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGAGGTTTGCCGTTACAGGTACCGGATGAGGTCACGGATAACGCCTCTCTGTTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCCAATGCCAGCATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATAACGACGCGGGTCTTTAAGCCGCTCAAGCTGGACCATACGTGGATTAACGTTCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGCGACGGTAAAGCGGTACACGTTTCGCCAGGAATGCTGGACGCTGAA
+GCCTATGGCGTAAAAACCAACGTGCAGGATATGGCAAGCTGGGTGATGGTCAACATGAAGCCGGACTCCCTTCAGGATAA
+TTCACTCAGGAAAGGCCTTACCCTGGCGCAGTCTCGCTACTGGCGCGTGGGGGCCATGTATCAGGGGTTAGGCTGGGAAA
+TGCTTAACTGGCCGGTCGATGCCAAAACCGTGGTTGAAGGTAGCGACAATAAGGTGGCACTGGCACCGCTGCCTGCGAGA
+GAAGTGAATCCACCGGCGCCCCCGGTCAACGCATCCTGGGTCCATAAAACAGGCTCTACCGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGTATTGTGATGCTGGCAAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATTTTGAGCGCGCTGTAG---
+>blaACT-3_1_EF125013
+ATGATGATGACTAAATCCCTTTGCTGCGCCCTGCTGCTCAGCACCTCCTGCTCGGTATTGGCTACCCCGATGTCAGAAAA
+ACAGCTGGCTGAGGTGGTGGAGCGGACCGTTACGCCGCTGATGAAAGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTGA
+TTTATGAGGGTCAGCCGCACTACTTCACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCTGTCACTCCACAAACCTTG
+TTCGAACTGGGTTCTATAAGTAAAACCTTCACCGGCGTACTCGGTGGCGATGCCATTGCTCGGGGTGAAATATCGCTGGG
+CGATCCGGTGACAAAATACTGGCCTGAGCTGACAGGCAAGCAGTGGCAGGGGATCCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGAGGTTTGCCGTTACAGGTACCGGATGAGGTCACGGATAACGCCTCTCTGTTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCCAATGCCAGCATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATAACGACGCGGGTCTTTAAGCCGCTCAAGCTGGACCATACGTGGATTAACGTTCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGCGACGGTAAAGCGATACACGTTTCGCCAGGAATGCTGGACGCTGAA
+GCCTATGGCGTAAAAACCAACGTGCAGGATATGGCAAGCTGGGTGATGGTCAACATGAAGCCGGACTCCCTTCAGGATAA
+TTCACTCAGGAAAGGCCTTACCCTGGCGCAGTCTCGCTACTGGCGCGTGGGGGCCATGTATCAGGGGTTAGGCTGGGAAA
+TGCTTAACTGGCCGGTCGATGCCAAAACCGTGGTTGAAGGTAGCGACAATAAGGTTGCACTGGCACCGCTGCCTGCGAGA
+GAAGTGAATCCACCAGCGCCCCCGGTCAATGCATCCTGGGTCCATAAAACAGGCTCTACCGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGTATTGTGATGCTGGCAAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATTTTGAGCGCGCTGTAG---
+>blaACT-4_2_AJ311172
+---ATGATGACTAAATCCCTTTGCTGCGCCCTGCTGCTCAGCACCTCCTGCTCGGTATTGGCTGCACCGATGTCAGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGGACCGTTACGCCGCTGATGAAAGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTGA
+TTTATCAGGGCCAGCCGCACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCTGTCACCCCACAAACCTTG
+TTCGAACTGGGTTCTATAAGTAAAACCTTTACCGGCGTACTGGGTGGCGATGCCATTGCTCGGGGTGAAATATCGCTGGG
+CGATCCGGTGACAAAATACTGGCCTGAGCTGACGGGCAAGCAGTGGCAGGGGATCCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGCGGTCTGCCGTTACAGGTACCGGATGAGGTCGCGGATAACGCCTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGTACCACGCGTCTTTACGCCAATACCAGCATCGGCCTTTTTGGCGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAACAGGCCATAACGACGCGGGTCTTTAAGCCGCTCAAGCTGGACCATACGTGGATTAACGTTCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGCGACGGTAAAGCGGTACACGTTTCGCCAGGCATGCTGGACGCTGAA
+GCCTATGGCGTAAAAACCAACGTGCAGGATATGGCAAGCTGGGTGATGGTCAACATGAAGCCGGACTCCCTTCAGGATAA
+TTCACTCAGGCAAGGCATTGCCCTGGCGCAGTCTCGCTACTGGCGCGTAGGGGCCATGTATCAGGGGTTAGGCTGGGAAA
+TGCTTAACTGGCCGGTCGATGCCAAAACCGTGGTTGAAGGTAGCGACAATAAGGTGGCACTGGCACCGCTGCCCGCAAGA
+GAAGTGAATCCTCCGGCGCCTCCGGTCAACGCGTCCTGGGTCCATAAAACAGGCTCTACCGGCGGGTTTGGCAGCTACGT
+GGCCTTTATTCCTGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCCAACCCAGCACGCGTTGAGGCGG
+CTTACCGTATTTTGAGCGCGCTGCAGTAA
+>blaACT-6_1_FJ237366
+---ATGATGACTAAATCCCTTTGCTGCGCCCTGCTGCTCAGCACCTCCTGCTCGGTATTGGCTGCCCCGATGTCAGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAAAGCTCAGGCCATTCCGGGTATGGCGGTGGCGGTGA
+TTTATCAGGGTCAGCCGCACTACTTTACCTTCGGTAAAGCCGATGTCGCGGCGAATAAACCCGTCACCCCACAAACCTTA
+TTCGAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTACTCGGCGGCGATGCCATTGCTCGCGGTGAAATATCGCTGGG
+CGATCCGGTGACAAAATACTGGCCTGAGCTGACAGGCAAGCAGTGGCAGGGGATCCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGTGGTTTGCCGTTACAGGTACCGGATGAGGTCACGGATAACGCCTCACTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCCAACGCCAGCATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATAACGACGCGGGTCTTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTTCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGCGACGGTAAGGCGGTACACGTTTCGCCAGGAATGCTGGACGCTGAA
+GCCTATGGCGTAAAAACCAACGTGAAGGATATGGCAAACTGGGTGATGGTCAACATGAAGCCGGACTCGCTTCAGGATAG
+TTCACTCAAGGAAGGCATTACCCTGGCGCAGTCTCGCTACTGGCGCGTGGGTGCCATGTATCAGGGATTAGGCTGGGAAA
+TGCTTAACTGGCCGGTCGATGCCAAAACCGTGGTTGAAGGTAGCGACAATAAGGTGGCGCTGGCACCGCTGCCTGCGAGA
+GAAGTGAATCCACCGGCGCCCCCGGTCAATGCGTCATGGGTCCATAAAACAGGCTCTACCGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATCCTCGACGCGCTGCAGTAA
+>blaCMG_1_AY265892
+------------------CTAAGCTGTGCCCTGCTGCTCAGCGTTGCCAGCGCTGCATTCGCCGCACCGATGTCCGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGCACCGTTACGCCGCTGATGAACGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTGA
+TTTATCAGGGTCAGCCGCACTACTTTACCTTCGGTAAAGCTGATGTTGCAGCGAACAAACCCGTCACCCCGCAAACCTTG
+TTCGAGCTGGGTTCGATAAGTAAAACCTTCACCGGCGTATTGGGTGGTGATGCGATTGCGCGCGGTGAAATAACGCTGGG
+CGATCCGGTGACCAAATACTGGCCTGAGCTCACGGGCAAGCAGTGGCAGGGCATTCGCATGCTGGATCTGGCAACCTACA
+CCGCAGGCGGTCTGCCGTTGCAGGTGCCGGATGAGGTCACGGATACCGCCTCCCTGCTGCGCTTTTATCAAAACTGGCAG
+CCAAAGTGGAAGCCGGGCACCACGCGTCTTTACGCTAACACCAGCATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCCTC
+CGGCATGAGCTATGAGCAGGCCATGACGACGCGGGTCTTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTCCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGTGACGGTAAAGCGGTCCACGTTTCGCCAGGGATGCTGGACGCGGAA
+GCCTATGGCGTAAAAACCAACGTGCAGGATATGGCAAGCTGGGTGATGGTCAACATGATGCCGGACTCCCTTCAGGATTC
+CCCACTTAAGCACGGTATCGCCCTGGCACAGTCTCGCTACTGGCGCGTGGGAGCCATGTATCAAGGATTGGGCTGGGAAA
+TGCTGAACTGGCCGGTCGACGCCCAAACGGTGGTCGGGGGCAGCGACAATAAGGTGGCGCTGGCGCCGTTGCCTGCAAGA
+GAAGTGAATCCACCGGCACCACCGGTTAAGGCCTCCTGGGTCCATAAAACGGGCTCTACCGGCGGATTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGCATTG------------------------------------------------
+-----------------------------
+>blaMIR-1_1_M37839
+---ATGATGACAAAATCCCTAAGCTGTGCCCTGCTGCTCAGCGTCGCCAGTTCTGCATTCGCCGCACCGATGTCCGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAACGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTAA
+TTTATCAGGGTCAGCCACACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCCGTCACCCCGCAAACCCTG
+TTTGAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTACTGGGCGGCGATGCCATTGCCCGGGGTGAAATAGCGCTGGG
+CGATCCGGTAGCAAAATACTGGCCTGAGCTCACGGGCAAGCAGTGGCAGGGCATTCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGCGGTCTGCCGTTACAGGTGCCGGATGAGGTCACGGATACCGCCTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCTAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTTAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATGACGACGCGGGTCTTTAAACCCCTCAAGCTGGACCATACCTGGATTAACGTCCCGA
+AAGCGGAAGAGGCGCATTTCGCCTGGGGATACCGTGAGGGTAAAGCGGTCCACGTTTCGCCAGGGATGCTGGACGCGGAA
+GCCTATGGCGTAAAAACTAACGTGAAGGATATGGCGAGCTGGCTGATAGCCAACATGAAGCCGGATTCTCTTCAGGCTCC
+CTCACTCAAGCAAGGCATTGCTCTGGCGCAGTCTCGCTACTGGCGCGTGGGGGCTATGTATCAGGGGTTAGGCTGGGAGA
+TGCTCAACTGGCCGGTCGATGCCAAAACCGTCGTCGGAGGCAGTGATAACAAGGTGGCGCTGGCACCATTGCCCGTGGCA
+GAAGTGAATCCACCCGCGCCGCCGGTCAAGGCCTCCTGGGTCCATAAAACAGGCTCGACGGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATCCTCGACGCGCTGCAGTAA
+>blaMIR-2_1_AY227752
+---ATGATGACAAAATCCCTAAGCTGTGCCCTGCTGCTCAGCGTCGCCAGCGCTGCATTCGCCGCACCGATGTCCGAAAC
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAACGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTAA
+TTTATCAGGGTCAGCCACACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCCGTCACCCCGCAAACCCTG
+TTTGAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTACTGGGCGGCGATGCCATTGCCCGGGGTGAAATAGCGCTGGG
+CGATCCGGTAGCAAAATACTGGCCTGAGCTCACGGGCAAGCAGTGGCAGGGCATTCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGCGGTCTGCCGTTACAGGTGCCGGATGAGGTCACGGATACCGCCTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCTAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTTAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATGACGACGCGGGTCTTTAAACCCCTCAAGCTGGACCATACCTGGATTAACGTCCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGTGAGGGTAAAGCGGTCCACGTTTCGCCAGGGATGCTGGACGCGGAA
+GCCTATGGCGTAAAAACTAACGTGAAGGATATGGCGAGCTGGGTGATAGCCAACATGAAGCCGGATTCTCTTCAGGCTCC
+CTCACTCAAGCAAGGCATTGCTCTGGCGCAGTCTCGCTACTGGCGCGTGGGGGCTATGTATCAGGGGTTAGGCTGGGAGA
+TGCTCAACTGGCCGGTCGATGCCAAAACCGTCGTCGGAGGCAGTGATAACAAGGTGGCGCTGGCACCATTGCCCGTGGCA
+GAAGTGAATCCACCCGCGCCGCCGGTCAAGGCCTCCTGGGTCCATAAAACAGGCTCGACGGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCATATCCTCGACGCGCTACAGTAA
+>blaMIR-3_1_AY743435
+---ATGATGACAAAATCCCTAAGCTGTGCCCTGCTGCTCAGCGTCGCCAGCGCTGCATTCGCCGCACCGATGTCCGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAACGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTAA
+TTTATCAGGGTCAGCCACACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCCGTCACCCCGCAAACCCTG
+TTTGAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTACTGGGCGGCGATGCCATTGCCCGGGGTGAAATAGCGCTGGG
+CGATCCGGTAGCAAAATACTGGCCTGAGCTCACGGGCAAGCAGTGGCAGGGCATTCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGCGGTCTGCCGTTACAGGTGCCGGATGAGGTCACGGATACCGCCTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCTAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATGACGACGCGGGTCTTTAAACCCCTCAAGCTGGACCATACCTGGATTAACGTCCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGTGAGGGTAAAGCGGTCCACGTTTCGCCAGGGATGCTGGACGCGGAA
+GCCTATGGCGTAAAAACTAACGTGAAGGATATGGCGAGCTGGCTGATAGCCAACATGAAGCCGGATTCTCTTCACGCTCC
+CTCACTCAAGCAAGGCATTGCTCTGGCGCAGTCTCGCTACTGGCGCGTGGGTGCTATGTATCAGGGGTTAGGCTGGGAGA
+TGCTCAACTGGCCGGTCGATGCCAAAACCGTCGTCGGAGGCAGTGATAACAAGGTGGCGCTGGCACCATTGCCCGTGGCA
+GAAGTGAATCCACCCGCGCCGCCGGTCAAAGCCTCCTGGGTCCATAAAACAGGCTCGACGGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATCCTCGACGCGCTGCAGTAA
+>blaMIR-4_1_EF417572
+---ATGATGACAAAATCCCTAAGCTGTGCCCTGCTGCTCAGCGTCGCCAGCGCTGCATTCGCCGCACCGATGTTCGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAACGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTAA
+TTTATCAGGGTCAGCCACACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCCGTCACCCCGCAAACCCTG
+TTTGAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTACTGGGCGGCGATGCCATTGCCCGGGGTGAAATAGCGCTGGG
+CGATCCGGTAGCAAAATACTGGCCTGAGCTCACGGGCAAGCAGTGGCAGGGCATTCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGCGGTCTGCCGTTACAGGTGCCGGATGAGGTCACGGATACCGCCTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCTAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATGACGACGCGGGTCTTTAAACCCCTCAAGCTGGACCATACCTGGATTAACGTCCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGTGAGGGTAAAGCGGTCCACGTTTCGCCAGGGATGCTGGACGCGGAA
+GCCTATGGCGTAAAAACTAACGTGAAGGATATGGCGAGCTGGCTGATAGCCAACATGAAGCCGGATTCTCTTCACGCTCC
+CTCACTCAAGCAAGGCATTGCTCTGGCGCAGTCTCGCTACTGGCGCGTGGGTGCTATGTATCAGGGGTTAGGCTGGGAGA
+TGCTCAACTGGCCGGTCGATGCCAAAACCGTCGTCGGAGGCAGTGATAACAAGGTGGCGCTGGCACCATTGCCCGTGGCA
+GAAGTGAATCCACCCGCGCCGCCGGTCAAAGCCTCCTGGGTCCATAAAACAGGCTCGACGGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTAGGCATTGTGATGCTGGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATCCTCGACGCGCTGCAGTAA
+>blaMIR-5_1_FJ237367
+---ATGATGACAAAATCCCTAAGCTGTGCCCTGCTGCTCAGCGTCGCCAGCTCTGCATTCGCCGCACCGATGTCCGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAACGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTAA
+TTTATCAGGGTCAGCCACACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCCGTCACCCCGCAAACCCTG
+TTTGAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTACTGGGCGGCGATGCCATTGCCCGGGGTGAAATAGCGCTGGG
+CGATCCGGTAGCAAAATACTGGCCTGAGCTCACGGGCAAGCAGTGGCAGGGCATTCGCATGCTGGATCTGGCAACCTACA
+CCGCAGGCGGTCTGCCGTTACAGGTGCCGGATGAGGTCACGGATACCGCCTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGTACCACGCGTCTTTACGCTAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTTAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATGACGACGCGGGTCTTTAAACCCCTCAAGCTGGACCATACCTGGATTAACGTCCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGTGAGGGTAAAGCGGTCCACGTTTCGCCAGGGATGCTGGACGCGGAA
+GCCTATGGCGTAAAAACTAACGTGAAGGATATGGCGAGCTGGCTGATAGCCAACATGAAGCCGGATTCTCTTCAGGCTCC
+CTCACTCAAGCAAGGCATTGCTCTGGCGCAGTCTCGCTACTGGCGCGTGGGGGCCATGTATCAGGGGTTGGGCTGGGAGA
+TGCTCAACTGGCCGGTCGATGCCAAAACCGTCGTCGGAGGCAGTGATAACAAGGTGGCGCTGGCACCATTGCCCGTGGCA
+GAAGTGAATCCACCCGCGCCGCCGGTTAAGGCCTCCTGGGTCCATAAAACAGGCTCGACGGGTGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATCCTCGACGCGCTGCAGTAA
+>blaMIR-6_1_JQ664733
+---ATGATGACAAAATCCCTAAGCTGTGCCCTGCTGCTCAGCGTCACCAGCGCTGCATTCGCCGCACCGATGTCCGAAAC
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAACGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTAA
+TTTATCAGGGTCAGCCACACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCCGTCACCCCGCAAACCCTG
+TTTGAGCTGGGCTCTATAAGTAAAACCTCCACCGGCGTACTGGGCGGCGATGCCATTGCCCGGGGTGAAATAGCGCTGGG
+CGATCCGGTAGCAAAATACTGGCCTGAGCTCACGGGCAAGCAGTGGCAGGGCATTCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGCGGTCTGCCGTTACAGGTGCCGGATGAGGTCACGGATACCGCTTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCTAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTTAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATGACGACGCGGGTCTTTAAACCCCTCAAGCTGGACCATACCTGGATTAACGTCCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGTGAGGGTAAAGCGGTCCACGTTTCGCCAGGGATGCTGGACGCGGAA
+GCCTATGGCGTAAAAACTAACGTGAAGGATATGGCGAGCTGGCTGATAGCCAACATGAAGCCGGATTCTCTTCAGGCTCC
+CTCACTCAAGCAAGGCATTGCTCTGGCGCAGTCTCGCTACTGGCGCGTGGGGGCTATGTATCAGGGGCTGGGCTGGGAGA
+TGCTCAACTGGCCGGTCGATGCCAAAACCGTCGTCGGAGGCAGTGATAACAAGGTGGCGCTGGCACCATTGCCCGTGGCA
+GAAGTGAATCCACCCGCGCCGCCGGTCAAAGCCTCCTGGGTCCATAAAACAGGCTCGACGGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATCCTCGACGCGCTGCAGTAA
+>consensus
++++ATGATGACAAAATCCCTAAGCTGTGCCCTGCTGCTCAGCGTCGCCAGCTCTGCATTCGCCGCACCGATGTCCGAAAA
+ACAGCTGGCTGAGGTGGTGGAACGTACCGTTACGCCGCTGATGAACGCGCAGGCCATTCCGGGTATGGCGGTGGCGGTGA
+TTTATCAGGGTCAGCCGCACTACTTTACCTTCGGTAAAGCCGATGTTGCGGCGAACAAACCCGTCACCCCGCAAACCTTG
+TTCGAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTACTGGGCGGCGATGCCATTGCCCGGGGTGAAATAGCGCTGGG
+CGATCCGGTGACAAAATACTGGCCTGAGCTCACGGGCAAGCAGTGGCAGGGCATTCGCATGCTGGATCTGGCAACCTATA
+CCGCAGGCGGTCTGCCGTTACAGGTGCCGGATGAGGTCACGGATACCGCCTCTCTGCTGCGCTTTTATCAAAACTGGCAG
+CCGCAGTGGAAGCCGGGCACCACGCGTCTTTACGCTAACGCCAGCATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCTTC
+CGGCATGAGCTATGAGCAGGCCATGACGACGCGGGTCTTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTCCCGA
+AAGCGGAAGAGGCGCATTACGCCTGGGGATACCGTGACGGTAAAGCGGTCCACGTTTCGCCAGGGATGCTGGACGCGGAA
+GCCTATGGCGTAAAAACCAACGTGAAGGATATGGCAAGCTGGGTGATGGTCAACATGAAGCCGGACTCTCTTCAGGATAC
+CTCACTCAAGCAAGGCATTGCCCTGGCGCAGTCTCGCTACTGGCGCGTGGGGGCCATGTATCAGGGGTTAGGCTGGGAAA
+TGCTCAACTGGCCGGTCGATGCCAAAACCGTGGTCGGAGGCAGCGACAATAAGGTGGCGCTGGCACCGTTGCCCGCGAGA
+GAAGTGAATCCACCCGCGCCGCCGGTCAACGCCTCCTGGGTCCATAAAACAGGCTCTACCGGCGGGTTTGGCAGCTACGT
+GGCATTTATTCCTGAAAAGCAGCTCGGCATTGTGATGCTGGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGG
+CATACCGTATCCTCGACGCGCTGCAGTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-212.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-212.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,33 @@
+>*blaACT-12_1_JX440355
+ATGATGAAAAAATCCCTGTGCTGCGCCCTGCTGCTCAGCACCTCCTGCGCTGCATTAGCCGCACCTCTGTCAGAAACACA
+GCTGGCGAAGGTCGTGGAACGTACCGTTACGCCCCTGATGAAAGCGCAGTCTATTCCGGGTATGGCGGTCGCCGTGATCT
+ATCAGGGCCAGCCGCACTACTTCACCTTCGGCAAGGCCGATGTCGCCGCGAACACACCCGTCACTGCACAAACGCTGTTT
+GAGCTGGGCTCAATCAGCAAAACCTTCACCGGCGTTCTGGGTGGCGATGCTATTGCTCGCGGTGAAATTTCGCTGGGCGA
+TCCGGTGACCAAATACTGGCCTGAACTGACCGGCAAACAGTGGCAGGGCGTTCGCATGCTGGACCTGGCAACCTATACTG
+CCGGTGGCCTGCCGTTACAGGTGCCCGATGAGGTTACCGATAATGCCTCGCTGCTGCGTTTTTACCAGTCCTGGCAACCA
+CAGTGGGCGCCAGGCACCACGCGTCTTTATGCGAATGCCAGCATCGGTCTGTTTGGGGCTCTGGCAGTGAAACCTTCTGG
+CATGCGCTTTGAGCAGGCGATGACGGAGCGGGTCCTGAAGCCGCTTAACCTGAACCATACGTGGATTAACGTTCCGAAGG
+CAGAAGAACAGCATTACGCCTGGGGTTATCGTGACGGTAAAGCGGTTCACGTTTCGCCGGGCATGCTCGATGCCGAAGCA
+TATGGCGTGAAAACCAACGTGAAGGATATGGCGAGCTGGGTGGTGGCTAACATGGCCCCCGATGGGGTACAGGATGCCTC
+ACTGAAGCAGGGCATGGTGCTTGCACAGTCTCGCTACTGGCGCACAGGCTCGATGTACCAGGGCCTGGGCTGGGAGATGC
+TCAACTGGCCGGTAGAAGCCAAAACCGTGGTGGAGGGCAGCGACAACAAGGTAGCGCTTGCACCGTTGCCCGTGGCAGAA
+GTGAACCCTCCGGCTCCACCGGTAAAAGCGTCATGGGTACATAAAACAGGCTCGACGGGCGGATTTGGCAGCTACGTGGC
+ATTTATCCCTGAGAAGGAACTCGGCATCGTTATGCTGGCGAACAAGAGCTACCCGAACCCGGCACGCGTGGAAGCGGCAT
+ACCGTATTCTGAGCGCTCTGCAGTAA
+>consensus
+ATGATGAAAAAATCCCTGTGCTGCGCCCTGCTGCTCAGCACCTCCTGCGCTGCATTAGCCGCACCTCTGTCAGAAACACA
+GCTGGCGAAGGTCGTGGAACGTACCGTTACGCCCCTGATGAAAGCGCAGTCTATTCCGGGTATGGCGGTCGCCGTGATCT
+ATCAGGGCCAGCCGCACTACTTCACCTTCGGCAAGGCCGATGTCGCCGCGAACACACCCGTCACTGCACAAACGCTGTTT
+GAGCTGGGCTCAATCAGCAAAACCTTCACCGGCGTTCTGGGTGGCGATGCTATTGCTCGCGGTGAAATTTCGCTGGGCGA
+TCCGGTGACCAAATACTGGCCTGAACTGACCGGCAAACAGTGGCAGGGCGTTCGCATGCTGGACCTGGCAACCTATACTG
+CCGGTGGCCTGCCGTTACAGGTGCCCGATGAGGTTACCGATAATGCCTCGCTGCTGCGTTTTTACCAGTCCTGGCAACCA
+CAGTGGGCGCCAGGCACCACGCGTCTTTATGCGAATGCCAGCATCGGTCTGTTTGGGGCTCTGGCAGTGAAACCTTCTGG
+CATGCGCTTTGAGCAGGCGATGACGGAGCGGGTCCTGAAGCCGCTTAACCTGAACCATACGTGGATTAACGTTCCGAAGG
+CAGAAGAACAGCATTACGCCTGGGGTTATCGTGACGGTAAAGCGGTTCACGTTTCGCCGGGCATGCTCGATGCCGAAGCA
+TATGGCGTGAAAACCAACGTGAAGGATATGGCGAGCTGGGTGGTGGCTAACATGGCCCCCGATGGGGTACAGGATGCCTC
+ACTGAAGCAGGGCATGGTGCTTGCACAGTCTCGCTACTGGCGCACAGGCTCGATGTACCAGGGCCTGGGCTGGGAGATGC
+TCAACTGGCCGGTAGAAGCCAAAACCGTGGTGGAGGGCAGCGACAACAAGGTAGCGCTTGCACCGTTGCCCGTGGCAGAA
+GTGAACCCTCCGGCTCCACCGGTAAAAGCGTCATGGGTACATAAAACAGGCTCGACGGGCGGATTTGGCAGCTACGTGGC
+ATTTATCCCTGAGAAGGAACTCGGCATCGTTATGCTGGCGAACAAGAGCTACCCGAACCCGGCACGCGTGGAAGCGGCAT
+ACCGTATTCTGAGCGCTCTGCAGTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-213.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-213.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,97 @@
+>*blaACT-14_1_JX440354
+ATGATGAAAAAATCTCTTTGCTGCGCCCTGCTGCTCGGCATCTCTTGCTCTGCTCTCGCCGCGCCAGTGTCAGAAAAACA
+GCTGGCGGAGGTGGTCGCGAATACGGTTACCCCGCTGATGAAAGCCCAGTCGATTCCAGGCATGGCGGTGGCCGTTATTT
+ATCAGGGTAAACCGCACTATTACACGTTTGGCAAAGCAGATATCGCGGCTAATAAACCCGTTACGCCTCAGACTCTGTTC
+GAGCTGGGCTCTATAAGTAAAACCTTCACCGGGGTTTTAGGTGGGGATGCCATTGCTCGCGGTGAAATTTCGCTGGACGA
+TCCGGTGACCAGATACTGGCCACAGCTAACGGGCAAGCAGTGGCAGGGGATTCGTATGCTGGATCTCGCAACCTACACCG
+CTGGCGGCCTGCCGCTACAGGTACCGGATGAGGTCACGGATAATGCCGCCCTGCTGCGCTTTTATCAAAACTGGCAGCCG
+CAGTGGAAGCCTGGCACAACGCGTCTTTACGCCAACGCCAGTATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCTTCCGG
+CATGGGCTATGAGCAGGCCATGACGACGCGGGTCCTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTTCCGAAAG
+CGGAAGAGGCGCATTACGCCTGGGGCTATCGTGACGGTAAAGCGGTGCGCGTTTCGCCGGGAATGCTGGATGCACAAGCC
+TATGGCGTGAAAACCAACGTGCAGGATATGGCGAACTGGGTCATGGCAAACATGGCGCCGGAGAAGGTTGCTGATGCCTC
+ACTTAAGCAGGGCATCGCGCTGGCGCAGTCGCGCTACTGGCGTATCGGGTCAATGTATCAGGGTCTGGGCTGGGAGATGC
+TCAACTGGCCCGTGGAGGCCAACACGGTGATCGAGGGCAGCGACAGTAAGGTGGCGCTGGCACCGCTGCCCGTGGCAGAA
+GTGAATCCACCGGCTCCCCCGGTCAAAGCGTCCTGGGTCCATAAAACGGGCTCTACTGGCGGGTTTGGCAGCTACTTGGC
+CTTTATTCCTGAAAAGCAGATCGGTATTGTGATGCTCGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGGCAT
+ACCATATCCTCGACGCGCTACAGTAA
+>blaACT-15_1_JX440356
+ATGATGAAAAAATCCCTTTGCTGCGCCCTGCTGCTCGGCATTTCTTGCTCTGCTCTCGCCACGCCAGTGTCAGAAAAACA
+GCTGGCGGAGGTGGTCGCGAATACGGTTACCCCGCTGATGAAAGCCCAGTCTGTTCCAGGCATGGCGGTGGCCGTTATTT
+ATCAGGGAAAACCGCACTATTACACGTTTGGCAAGGCCGATATCGCGGCGAATAAACCCGTTACGCCTCAGACCCTGTTC
+GAGCTGGGTTCTATAAGTAAAACCTTCACCGGCGTTTTAGGTGGGGATGCCATTGCTCGCGGTGAAATTTCGCTGGACGA
+TCCGGTGACCAGATACTGGCCACAGCTGACGGGCAAGCAGTGGCAGGGTATTCGTATGCTGGATCTCGCCACCTACACCG
+CTGGCGGCCTGCCGCTACAGGTACCGGATGAGGTCACGGATAACGCCTCCCTGCTGCGCTTTTATCAAAACTGGCAGCCG
+CAGTGGAAGTCTGGCACAACGCGTCTTTACGCCAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTCAAACCTTCTGG
+CATGCCCTATGAGCAGGCCATGACGACGCGGGTCCTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTGCCGAAAG
+CGGAAGAGGCGCATTACGCCTGGGGCTATCGTGACGGTAAAGCGGTGCGCGTTTCGCCGGGTATGCTGGATGCACAAGCC
+TATGGCGTGAAAACCAACGTGCAGGATATGGCGAACTGGGTCATGGCAAACATGGCGCCGGAGAACGTTGCTGATGCCTC
+ACTTAAGCAGGGCATCGCGCTGGCGCAGTCGCGCTACTGGCGTATCGGGTCAATGTATCAGGGTCTGGGCTGGGAGATGC
+TCAACTGGCCCGTGGAGGCCAACACGGTGGTCGAGGGCAGCGACAGTAAGGTAGCGCTGGCGCCGTTGCCCGTGGTAGAA
+GTGAATCCACCGGCTCCCCCGGTCAAAGCGTCCTGGGTCCATAAAACGGGCTCTACTGGCGGGTTTGGCAGCTACGTGGC
+CTTTATTCCTGAAAAGCAGATCGGTATTGTGATGCTCGCGAATACAAGCTATCCGAACCCGGCACGTGTTGAGGCGGCAT
+ACCATATCCTCGAGGCGCTACAGTAA
+>blaACT-16_1_AB737978
+ATGATGAAAAAATCCCTTTGCTGCGCCCTGCTGCTGGGCCTCTCTTGCTCTGCTCTCGCCGCGCCAGTATCAGAAAAACA
+GCTGGCGGAGGTGGTCGCGAATACGGTTACCCCGCTGATGAAAGCCCAGTCTGTTCCAGGCATGGCGGTGGCCGTTATTT
+ATCAGGGAAAATCGCACTATTACACGTTTGGCAAGGCCGATATCGCGGCGAATAAACCCGTTACGCCTCAGACCCTGTTC
+GAGCTGGGTTCTATAAGTAAAACCTTCACCGGCGTTTTAGGTGGGGATGCCATTGCTCGCGGTGAAATTTCGCTGGACGA
+TCCGGTGACCAGATACTGGCCACAGCTGACGGGCAAGCAGTGGCAGGGTATTCGTATGCTGGATCTCGCCACCTACACCG
+CTGGCGGCCTGCCGCTACAGGTACCGGATGAGGTCACGGATAACGCCTCCCTGCTGCGCTTTTATCAAAACTGGCAGCCG
+CAGTGGAAGCCTGGCACAACGCGTCTTTACGCCAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTCAAACCTTCTGG
+CATGCCCTATGAGCAGGCCATGACGACGCGGGTCCTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTTCCGAAAG
+CGGAAGAGGCGCATTACGCCTGGGGCTATCGTGACGGTAAAGCGGTGCGCGTTTCGCCGGGAATGCTGGATGCACAAGCC
+TATGGCGTGAAAACCAACGTGCAGGATATGGCGAACTGGGTCATGGCAAACATGGCGCCGGAGAAGGTTGCCGATGCCTC
+ACTTAAGCAGGGCATCGCGCTGGCGCAGTCGCGCTACTGGCGTATCGGGTCAATGTATCAGGGTCTGGGCTGGGAGATGC
+TCAACTGGCCCGTGGAGGCCAACACGGTGGTCGAAGGCAGCGACAGTAAGGTAGCGCTGGCGCCGTTACCCGTGGCAGAA
+GTGAATCCACCGGCTCCCCCGGTCAAAGCGTCCTGGGTCCATAAAACGGGTTCTACCGGCGGGTTTGGCAGCTACGTGGC
+CTTTATTCCTGAAAAGCAGATCGGTATTGTGATGCTCGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGGCAT
+ACCATATCCTCGAGGCGCTA------
+>blaACT-5_1_FJ237369
+ATGATGAAAAAATCTCTTTGCTGCGCCCTGCTGCTCGGCATCTCTTGCTCTGCTCTCGCCGCGCCAGTGTCAGAAAAACA
+GCTGGCGGAGGTGGTCGCGAATACGGTTACCCCGCTGATGAAAGCCCAGTCGATTCCAGGCATGGCGGTGGCCGTTATTT
+ATCAGGGTAAACCGCACTATTACACGTTTGGCAAAGCCGATATCGCGGCCAGCAAACCCGTTACGCCTCAGACTCTGTTC
+GAGCTGGGTTCTATAAGTAAAACCTTCACCGGGGTTTTAGGTGGGGATGCCATTGCTCGCGGTGAAATTTCGCTGGACGA
+TCCGGTGACCAGATACTGGCCACAGCTGACGGGCAAGCAGTGGCAGGGGATTCGTATGCTGGATCTCGCAACCTACACCG
+CTGGCGGCCTGCCGCTACAGGTACCGGATGAGGTCACGGATAATGCCGCCCTGCTGCGCTTTTATCAAAACTGGCAGCCG
+CAGTGGAAGCCTGGCACAACGCGTCTTTACGCCAACGCCAGTATCGGTCTTTTTGGCGCGCTGGCGGTCAAACCTTCCGG
+CATGCCCTTTGAGCAGGCCATGACGACGCGGGTCCTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTTCCGAAAG
+CGGAAGAGGCGCATTACGCCTGGGGATATCGTGACGGTAAAGCGGTGCGCGTTTCGCCGGGAATGCTGGATGCACAAGCC
+TATGGCATGAAAACCAACGTGCAGGATATGGCGAACTGGGTCATGGCAAATATGGCGCCGGAGAACGTTGCTGATGCCTC
+ACTTAAGCAGGGCATCTCGCTGGCGCAGTCGCGCTACTGGCGTATCGGGTCAATGTATCAGGGTCTGGGCTGGGAGATGC
+TCAACTGGCCCGTGGAGGCCAACACGGTGATCGAGGGCAGCGACAGTAAGGTGGCGCTGGCACCGCTGCCCGTGGCAGAA
+GTGAATCCACCGGCTCCCCCGGTCAAAGCGTCCTGGGTCCATAAAACGGGCTCTACTGGCGGGTTTGGCAGCTACGTGGC
+CTTTATTCCTGAAAAGCAGATCGGTATTGTGATGCTCGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGGCAT
+ACCCTATCCTCGACGCGCTACAGTAA
+>blaACT-7_1_FJ237368
+ATGATGAGAAAATCCCTTTGCTGCGCCCTGCTGCTCGGCATCTCTTGCTCTGCTCTCGCCACGCCAGTGTCAGAAAAACA
+GCTGGCGGAGGTGGTAGCGAATACGGTTACCCCGCTGATGAAAGCCCAGTCTGTTCCAGGCATGGCGGTGGCCGTTATTT
+ATCAGGGAAAACCGCACTATTACACGTTTGGCAAGGCCGATATCGCGGCGAATAAACCCGTTACGCCTCAGACCCTGTTC
+GAGCTGGGTTCTATAAGTAAAACCTTCACCGGCGTTTTAGGTGGGGATGCCATTGCTCGCGGTGAAATTTCGCTGGACGA
+TCCGGTGACCAGATACTGGCCACAGCTGACGGGCAAGCAGTGGCAGGGTATTCGTATGCTGGATCTCGCCACCTACACCG
+CTGGCGGCCTGCCGCTACAGGTACCGGATGAGGTCACGGATAACGCCTCCCTGCTGCGCTTTTATCAAAACTGGCAGCCG
+CAGTGGAAGCCTGGCACAACGCGTCTTTACGCCAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTCAAACCTTCTGG
+CATGCCCTATGAGCAGGCCATGACGACGCGGGTCCTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTGCCGAAAG
+CGGAAGAGGCACATTACGCCTGGGGCTATCGTGACGGTAAAGCGGTGCGCGTTTCGCCGGGTATGCTGGATGCACAAGCC
+TATGGCGTGAAAACCAACGTGCAGGATATGGCGAACTGGGTCATGGCAAACATGGCGCCGGAGAACGTTGCTGATGCCTC
+ACTTAAGCAGGGCATCGCGCTGGCGCAGTCGCGCTACTGGCGTATCGGGTCAATGTATCAGGGTCTGGGCTGGGAGATGC
+TCAACTGGCCCGTGGAGGCCAACACGGTGGTCGAGGGCAGCGACAGTAAGGTAGCGCTGGCGCCGTTGCCCGTGGCAGAA
+GTGAATCCACCGGCTCCCCCGGTCAAAGCGTCCTGGGTCCATAAAACGGGCTCTACTGGCGGGTTTGGCAGCTACGTGGC
+CTTTATTCCTGAAAAGCAGATCGGTATTGTGATGCTCGCGAATACAAGCTATCCGAACCCGGCACGCGTTGAGGCGGCAT
+ACCATATCCTCGAGGCGCTACAGTAA
+>consensus
+ATGATGAAAAAATCCCTTTGCTGCGCCCTGCTGCTCGGCATCTCTTGCTCTGCTCTCGCCGCGCCAGTGTCAGAAAAACA
+GCTGGCGGAGGTGGTCGCGAATACGGTTACCCCGCTGATGAAAGCCCAGTCTGTTCCAGGCATGGCGGTGGCCGTTATTT
+ATCAGGGAAAACCGCACTATTACACGTTTGGCAAGGCCGATATCGCGGCGAATAAACCCGTTACGCCTCAGACCCTGTTC
+GAGCTGGGTTCTATAAGTAAAACCTTCACCGGCGTTTTAGGTGGGGATGCCATTGCTCGCGGTGAAATTTCGCTGGACGA
+TCCGGTGACCAGATACTGGCCACAGCTGACGGGCAAGCAGTGGCAGGGTATTCGTATGCTGGATCTCGCCACCTACACCG
+CTGGCGGCCTGCCGCTACAGGTACCGGATGAGGTCACGGATAACGCCTCCCTGCTGCGCTTTTATCAAAACTGGCAGCCG
+CAGTGGAAGCCTGGCACAACGCGTCTTTACGCCAACGCCAGCATCGGTCTTTTTGGTGCGCTGGCGGTCAAACCTTCTGG
+CATGCCCTATGAGCAGGCCATGACGACGCGGGTCCTTAAGCCGCTCAAGCTGGACCATACCTGGATTAACGTTCCGAAAG
+CGGAAGAGGCGCATTACGCCTGGGGCTATCGTGACGGTAAAGCGGTGCGCGTTTCGCCGGGAATGCTGGATGCACAAGCC
+TATGGCGTGAAAACCAACGTGCAGGATATGGCGAACTGGGTCATGGCAAACATGGCGCCGGAGAACGTTGCTGATGCCTC
+ACTTAAGCAGGGCATCGCGCTGGCGCAGTCGCGCTACTGGCGTATCGGGTCAATGTATCAGGGTCTGGGCTGGGAGATGC
+TCAACTGGCCCGTGGAGGCCAACACGGTGGTCGAGGGCAGCGACAGTAAGGTAGCGCTGGCGCCGTTGCCCGTGGCAGAA
+GTGAATCCACCGGCTCCCCCGGTCAAAGCGTCCTGGGTCCATAAAACGGGCTCTACTGGCGGGTTTGGCAGCTACGTGGC
+CTTTATTCCTGAAAAGCAGATCGGTATTGTGATGCTCGCGAATAAAAGCTATCCGAACCCGGCACGCGTTGAGGCGGCAT
+ACCATATCCTCGAGGCGCTACAGTAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-214.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-214.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,33 @@
+>*blaACT-9_1_HQ693810
+ATGAAGACAAAATCCCTTTGCTGTGCCCTGCTGCTCAGCACCTCCTGCTCTGTTCTCGCCGCGCCGATGTCAGAGAAACA
+GCTGTCTGACGTGGTGGAACGTACCGTTACCCCCCTGATGAAAGCGCAAGCCATTCCGGGCATGGCGGTGGCGGTGATTT
+ATCAGGGTCAGCCGCACTACTTTACCTTCGGAAAGGCCGATGTTACGGCGAACAAACCTGTCACCCCGCAAACCCTGTTT
+GAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTATTAGGTGGCGATGCGATTGCGCGCGGAGAAATATCGCTGGGCGA
+CCCCGTGACAAAGTACTGGCCCGAGCTAACAGGCAAGCAGTGGCAGGGTATTCGCATGTTGGATCTGGCGACCTACACCG
+CGGGTGGCCTGCCGCTACAGGTGCCGGATGAGGTCACGGATAACACCTCCCTGCTGCGTTTCTATCAACACTGGCAACCG
+CAGTGGAAACCAGGCACAACGCGTCTTTATGCGAACGCCAGCATCGGGCTTTTTGGCGCCCTCGCGGTTAAACCCTCCGG
+TATGAACTTTGAACAGGCCATGACGAAGCGGGTCTTCAAGCCACTCAAACTGGACCATACATGGATTAACGTTCCGAAAG
+AAGAAGAGGCGCATTACGCCTGGGGATACCGTGATGGTAAAGCAATCCACGTTTCACCGGGAATGCTGGATGCCGAAGCG
+TATGGTGTCAAAACCAACATCCAGGATATGGCGAGCTGGCTGAAGGCCAACATGAACCCTGACGCCCTTTCGGATTCAAC
+GTTGAAACAGGGTATTGCCCTGGCACAGTCTCGCTACTGGCGCGTGGGTGCCATGTATCAGGGTCTGGGCTGGGAGATGC
+TCAACTGGCCGGTAGAAGCCAAAACCGTCGTGGAGGGCAGCGATAACAAGGTGGCTCTTGCACCGTTACTGGTGGCAGAA
+GTGAACCCTCCAGCTCCGCCAGTAAAAGCATCATGGGTACATAAAACAGGCTCGACGGGTGGATTCGGCAGCTATGTCGC
+ATTTATTCCTGAAAAGGAACTCGGCATTGTTATGCTGGCGAACAAGAGCTACCCGAACCCGGCGCGCGTGGAAGCGGCAT
+ACCGTATTTTGAGCGCTCTGTAG
+>consensus
+ATGAAGACAAAATCCCTTTGCTGTGCCCTGCTGCTCAGCACCTCCTGCTCTGTTCTCGCCGCGCCGATGTCAGAGAAACA
+GCTGTCTGACGTGGTGGAACGTACCGTTACCCCCCTGATGAAAGCGCAAGCCATTCCGGGCATGGCGGTGGCGGTGATTT
+ATCAGGGTCAGCCGCACTACTTTACCTTCGGAAAGGCCGATGTTACGGCGAACAAACCTGTCACCCCGCAAACCCTGTTT
+GAGCTGGGCTCTATAAGTAAAACCTTCACCGGCGTATTAGGTGGCGATGCGATTGCGCGCGGAGAAATATCGCTGGGCGA
+CCCCGTGACAAAGTACTGGCCCGAGCTAACAGGCAAGCAGTGGCAGGGTATTCGCATGTTGGATCTGGCGACCTACACCG
+CGGGTGGCCTGCCGCTACAGGTGCCGGATGAGGTCACGGATAACACCTCCCTGCTGCGTTTCTATCAACACTGGCAACCG
+CAGTGGAAACCAGGCACAACGCGTCTTTATGCGAACGCCAGCATCGGGCTTTTTGGCGCCCTCGCGGTTAAACCCTCCGG
+TATGAACTTTGAACAGGCCATGACGAAGCGGGTCTTCAAGCCACTCAAACTGGACCATACATGGATTAACGTTCCGAAAG
+AAGAAGAGGCGCATTACGCCTGGGGATACCGTGATGGTAAAGCAATCCACGTTTCACCGGGAATGCTGGATGCCGAAGCG
+TATGGTGTCAAAACCAACATCCAGGATATGGCGAGCTGGCTGAAGGCCAACATGAACCCTGACGCCCTTTCGGATTCAAC
+GTTGAAACAGGGTATTGCCCTGGCACAGTCTCGCTACTGGCGCGTGGGTGCCATGTATCAGGGTCTGGGCTGGGAGATGC
+TCAACTGGCCGGTAGAAGCCAAAACCGTCGTGGAGGGCAGCGATAACAAGGTGGCTCTTGCACCGTTACTGGTGGCAGAA
+GTGAACCCTCCAGCTCCGCCAGTAAAAGCATCATGGGTACATAAAACAGGCTCGACGGGTGGATTCGGCAGCTATGTCGC
+ATTTATTCCTGAAAAGGAACTCGGCATTGTTATGCTGGCGAACAAGAGCTACCCGAACCCGGCGCGCGTGGAAGCGGCAT
+ACCGTATTTTGAGCGCTCTGTAG
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-215.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-215.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,33 @@
+>*blaADC-25_1_EF016355
+ATGCGATTTAAAAAAATTTCTTGTCTACTTTTATCCCCGCTTTTTATTTTTAGTACCTCAATTTATGCGGGCAATACACC
+AAAAGACCAAGAAATTAAAAAACTGGTAGATCAAAACTTTAAACCGTTATTAGAAAAATATGATGTGCCAGGTATGGCTG
+TGGGTGTTATTCAAAATAATAAAAAGTATGAAATGTATTATGGTCTTCAATCTGTTCAAGATAAAAAAGCCGTAAATAGC
+AGTACTATTTTTGAGCTAGGTTCTGTCAGTAAATTATTTACCGCGACAGCAGGTGGATATGCAAAAAATAAAGGAAAAAT
+CTCTTTTGACGATACGCCTGGTAAGTATTGGAAAGAACTAAAAAATACACCGATTGACCAAGTTAACTTACTTCAACTCG
+CGACGTATACAAGTGGTAACCTTGCCTTGCAATTTCCAGATGAAGTAAAAACAGATCAGCAAGTTTTAACATTTTTTAAA
+GACTGGAAACCTAAAAACTCAATCGGTGAATATCGACAATATTCAAACCCAAGCATTGGTTTATTTGGAAAAGTTGTAGC
+TTTGTCTATGAATAAACCTTTCGACCAAGTCTTAGAAAAAACAATTTTTCCGGCCCTTGGCTTAAAACATAGCTATGTAA
+ATGTACCTAAGACCCAGATGCAAAACTATGCTTTTGGCTATAACCAAGAAAATCAGCCGATTCGAGTTAACCCCGGCCCA
+CTCGATGCCCCAGCATATGGCGTCAAATCGACACTACCCGACATGTTGAGTTTTATTCATGCCAACCTAAATCCACAAAA
+ATATCCAGCAGATATTCAACGGGCAATTAATGAAACACATCAGGGTCGCTATCAAGTAAATACCATGTATCAGGCACTCG
+GTTGGGAAGAGTTTTCTTATCCGGCAACGTTACAAACTTTATTAGACAGTAATTCAGAACAGATTGTGATGAAACCTAAT
+AAAGTGACTGCTATTTCAAAGGAACCTTCAGTTAAGATGTACCATAAAACTGGCTCAACTAACGGTTTCGGAACATATGT
+GGTGTTTATTCCTAAAGAAAATATTGGTTTAGTCATGTTAACCAATAAACGTATTCCAAATGAAGAGCGCATTAAGGCAG
+CTTATGCTGTGCTGAATGCAATAAAGAAATAA
+>consensus
+ATGCGATTTAAAAAAATTTCTTGTCTACTTTTATCCCCGCTTTTTATTTTTAGTACCTCAATTTATGCGGGCAATACACC
+AAAAGACCAAGAAATTAAAAAACTGGTAGATCAAAACTTTAAACCGTTATTAGAAAAATATGATGTGCCAGGTATGGCTG
+TGGGTGTTATTCAAAATAATAAAAAGTATGAAATGTATTATGGTCTTCAATCTGTTCAAGATAAAAAAGCCGTAAATAGC
+AGTACTATTTTTGAGCTAGGTTCTGTCAGTAAATTATTTACCGCGACAGCAGGTGGATATGCAAAAAATAAAGGAAAAAT
+CTCTTTTGACGATACGCCTGGTAAGTATTGGAAAGAACTAAAAAATACACCGATTGACCAAGTTAACTTACTTCAACTCG
+CGACGTATACAAGTGGTAACCTTGCCTTGCAATTTCCAGATGAAGTAAAAACAGATCAGCAAGTTTTAACATTTTTTAAA
+GACTGGAAACCTAAAAACTCAATCGGTGAATATCGACAATATTCAAACCCAAGCATTGGTTTATTTGGAAAAGTTGTAGC
+TTTGTCTATGAATAAACCTTTCGACCAAGTCTTAGAAAAAACAATTTTTCCGGCCCTTGGCTTAAAACATAGCTATGTAA
+ATGTACCTAAGACCCAGATGCAAAACTATGCTTTTGGCTATAACCAAGAAAATCAGCCGATTCGAGTTAACCCCGGCCCA
+CTCGATGCCCCAGCATATGGCGTCAAATCGACACTACCCGACATGTTGAGTTTTATTCATGCCAACCTAAATCCACAAAA
+ATATCCAGCAGATATTCAACGGGCAATTAATGAAACACATCAGGGTCGCTATCAAGTAAATACCATGTATCAGGCACTCG
+GTTGGGAAGAGTTTTCTTATCCGGCAACGTTACAAACTTTATTAGACAGTAATTCAGAACAGATTGTGATGAAACCTAAT
+AAAGTGACTGCTATTTCAAAGGAACCTTCAGTTAAGATGTACCATAAAACTGGCTCAACTAACGGTTTCGGAACATATGT
+GGTGTTTATTCCTAAAGAAAATATTGGTTTAGTCATGTTAACCAATAAACGTATTCCAAATGAAGAGCGCATTAAGGCAG
+CTTATGCTGTGCTGAATGCAATAAAGAAATAA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-216.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-216.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,27 @@
+>*blaAER-1_1_U14748
+ATGTACGTACTTTCCGTGGAGAAACCTACATTGAGAAACAAATTTGCGGCCGGAATAGGCGTCGTGCTTGTATGTGTCGT
+TGCCTCGTTTATTCCAACCCCAGTATTCGCCCTAGACACCACGAAGCTGATCCAAGCCGTCCAGTCGGAAGAGAGCGCCT
+TGCATGCCCGAGTCGGCATGACCGTGTTTGACTCAAACACTGGAACGACTTGGAACTATCGGGGCGATGAGCGGTTTCCA
+TTGAACAGTACGCACAAGACGTTTTCCTGTGCAGCTTTGCTCGCGAAGGTCGATGGGAAGTCCCTCTCTCTGGGCCAATC
+CGTATCGATCAGCAAGGAAATGCTGGTCACCTATTCGCCGATTACGGAAAAGTCGCTGTCACCCGAAACCGTTACCTTCG
+GCAAGATTTGTCAGGCAGCGGTGAGCTATAGCGATAACACAGCCGCAAACGTCGTCTTTGATGCCATTGGAGGAGCAACC
+GGATTCAACGCATACATGCGGTCTATCGGCGATGAAGAAACCCAGCTTGATCGCAAAGAACCCGAGTTGAACGAAGGTAC
+GCCGGGCGATGTGCGTGACACCACCACTCCCAACGCCATGGTCAATAGTCTTAGGAAGATACTTCTTGGCGACGCGTTGT
+CAGCATCATCCCGATCCCAGCTGACGCAATGGATGCTGGACGATCAGGTTGCTGGTGCGCTCCTGCGTGCCTCACTGCCA
+TCCGATTGGAAGATCGCCGACAAGACCGGCGCGGGGGGTTACGGCTCACGCTCGATCGTCGCAGTAATCTGGCCGCCATC
+GAAGCAGCCACTGGTGGTTGGCATCTATATCACGCAAACCAAAGCATCCATGCAGGCCAGCAATCAGGCGATTGCAAGGA
+TAGGAGTGGTGCTGAAGGATACGGTCGCTCCTTGA
+>consensus
+ATGTACGTACTTTCCGTGGAGAAACCTACATTGAGAAACAAATTTGCGGCCGGAATAGGCGTCGTGCTTGTATGTGTCGT
+TGCCTCGTTTATTCCAACCCCAGTATTCGCCCTAGACACCACGAAGCTGATCCAAGCCGTCCAGTCGGAAGAGAGCGCCT
+TGCATGCCCGAGTCGGCATGACCGTGTTTGACTCAAACACTGGAACGACTTGGAACTATCGGGGCGATGAGCGGTTTCCA
+TTGAACAGTACGCACAAGACGTTTTCCTGTGCAGCTTTGCTCGCGAAGGTCGATGGGAAGTCCCTCTCTCTGGGCCAATC
+CGTATCGATCAGCAAGGAAATGCTGGTCACCTATTCGCCGATTACGGAAAAGTCGCTGTCACCCGAAACCGTTACCTTCG
+GCAAGATTTGTCAGGCAGCGGTGAGCTATAGCGATAACACAGCCGCAAACGTCGTCTTTGATGCCATTGGAGGAGCAACC
+GGATTCAACGCATACATGCGGTCTATCGGCGATGAAGAAACCCAGCTTGATCGCAAAGAACCCGAGTTGAACGAAGGTAC
+GCCGGGCGATGTGCGTGACACCACCACTCCCAACGCCATGGTCAATAGTCTTAGGAAGATACTTCTTGGCGACGCGTTGT
+CAGCATCATCCCGATCCCAGCTGACGCAATGGATGCTGGACGATCAGGTTGCTGGTGCGCTCCTGCGTGCCTCACTGCCA
+TCCGATTGGAAGATCGCCGACAAGACCGGCGCGGGGGGTTACGGCTCACGCTCGATCGTCGCAGTAATCTGGCCGCCATC
+GAAGCAGCCACTGGTGGTTGGCATCTATATCACGCAAACCAAAGCATCCATGCAGGCCAGCAATCAGGCGATTGCAAGGA
+TAGGAGTGGTGCTGAAGGATACGGTCGCTCCTTGA
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-217.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-217.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,27 @@
+>*blaAST-1_1_AF279904
+GTGACTTTCTCCGCTCTCCCCTTCCGCCGGGCCGACCGCCGGCGCCTGCTCGCCGCCGCGCTCGCGGCCTGCGCACTGAC
+CCTGACGGCGGCCTGTGATTCCGGCACCGTCACCGTTCCGGTGACGGACTCGGTGACCACCTCGGCGGTGGCCGATCCCC
+GGTTCGCCGAACTGGAAACCACTTCCGGCGCCCGGCTGGGCGTGTTCGCCGTCGACACCGGCTCCGGGCGCACCGTCGCC
+CACCGCGCCGACGAACGGTTCCCGATGGCGTCCACGTTCAAGGGCCTGGCGTGCGGGGCGCTGCTGCGCGAGCATCCCCT
+GTCGACGGGCTACTTCGATCAGGTGATCCACTACTCCGCCGCCGAGCTGGTCGAGTATTCGCCGGTGACCGAGACCCGGG
+TCGAGACCGGCATGACGGTCCGGGAACTGTGCGACGCCGCGATCACGGTTTCCGACAACACGGCGGGCAATCAGTTGCTG
+AAACTGCTCGGTGGACCGGAGGGATTCACCGCGTCCCTGCGTTCCCTCGGCGACGCCACGTCGCGGCTGGACCGCTGGGA
+GACCGACCTGAACACCGCGATTCCCGGGGATGAGCGCGATACCACCACCCCGGCCGCGCTCGCCGCCGACTACCGCGCGC
+TCGTCGTCGGCGATGTCCTCGGCGCACCCGAACGCGACCAGCTGAAGGCATGGCTCGTCGCCAACACCACCGGTGCCACC
+CGGATTCGCGCGGGTCTGCCCGCGGACTGGACCGTCGGCGACAAGACCGGCAGCCCGGCCTACGGTTCGGCCCTCGATGT
+CGCGGTGGCCTGGCCGCCCGGTCGCGCGCCGATCGTCATCGCGGTGCTGTCGACTAAGTCCGAGCAGGACGCCGAACCCG
+ACAACGCCCTGCTCGCCGAGGCCACCCGCGTGGTGGTCGACGCGCTCGGATAG
+>consensus
+GTGACTTTCTCCGCTCTCCCCTTCCGCCGGGCCGACCGCCGGCGCCTGCTCGCCGCCGCGCTCGCGGCCTGCGCACTGAC
+CCTGACGGCGGCCTGTGATTCCGGCACCGTCACCGTTCCGGTGACGGACTCGGTGACCACCTCGGCGGTGGCCGATCCCC
+GGTTCGCCGAACTGGAAACCACTTCCGGCGCCCGGCTGGGCGTGTTCGCCGTCGACACCGGCTCCGGGCGCACCGTCGCC
+CACCGCGCCGACGAACGGTTCCCGATGGCGTCCACGTTCAAGGGCCTGGCGTGCGGGGCGCTGCTGCGCGAGCATCCCCT
+GTCGACGGGCTACTTCGATCAGGTGATCCACTACTCCGCCGCCGAGCTGGTCGAGTATTCGCCGGTGACCGAGACCCGGG
+TCGAGACCGGCATGACGGTCCGGGAACTGTGCGACGCCGCGATCACGGTTTCCGACAACACGGCGGGCAATCAGTTGCTG
+AAACTGCTCGGTGGACCGGAGGGATTCACCGCGTCCCTGCGTTCCCTCGGCGACGCCACGTCGCGGCTGGACCGCTGGGA
+GACCGACCTGAACACCGCGATTCCCGGGGATGAGCGCGATACCACCACCCCGGCCGCGCTCGCCGCCGACTACCGCGCGC
+TCGTCGTCGGCGATGTCCTCGGCGCACCCGAACGCGACCAGCTGAAGGCATGGCTCGTCGCCAACACCACCGGTGCCACC
+CGGATTCGCGCGGGTCTGCCCGCGGACTGGACCGTCGGCGACAAGACCGGCAGCCCGGCCTACGGTTCGGCCCTCGATGT
+CGCGGTGGCCTGGCCGCCCGGTCGCGCGCCGATCGTCATCGCGGTGCTGTCGACTAAGTCCGAGCAGGACGCCGAACCCG
+ACAACGCCCTGCTCGCCGAGGCCACCCGCGTGGTGGTCGACGCGCTCGGATAG
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-218.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-218.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,40 @@
+>*blaA_1_DQ424965
+------------------------------TTATTAGCTGGTATTACCCTGCCCTTAGTTAATTTTTCGCTACCTACCTG
+GGCTGCTGGGATCCCGGGATCATTAGACAAGCAATTGGCAGCACTTGAGCACAGTGCTAACGGTCGTTTAGGCATTGCGA
+TGATTAATACCGGCAATGGCACCAAAATTCTGTATCGCGGAGCTCGACGTTTCCCATTCTGTAGTACTTTTAAGTTTATG
+TTAGCCGCTGCTGTATTGGGTCAAAGCCAATCTCAGCCGAATTTGCTCAATAAGCATATCAATTACCATGAGAGTGATTT
+GTTATCTTATGCCCCCATCACGCGTAAAAATCTGGCGCATGGTATGACAGTTTCTGAATTATGTGCGGCTACCATTCAAT
+ATAGCGATAACACGGCCGCGAATTTATTACTTAAAGAGTTGGGTGGTTTAGCGGCTGTTAATCAGTTTGCTCGCAGTATT
+GGCGATCAGATGTTCAGGTTAGACCGCTGGGAACCGGATTTAAACACCGCATTACCTAATGACCCACGTGATACCACCAC
+TCCTGCGGCTATGGCAGCTAGTATAAATAAATTGGTATTGGGTGATGCATTGCACCCTGCCCAACGAAGCCAACTCACGG
+CATGGCTGAAAGGAAACACCACCGGGGATGCCACGATTCGCGCGGGTGCCCCTACTGACTGGATTGTGGGTGACAAAACA
+GGTAGTGGCGATTACGGAACCACCAATGATATTGCGGTACTTTGGCCGACGAAAGGTGCACCGATTGTTTTAGTGGTGTA
+TTTCACGCAACGTGAAAAAGATGCAAACCCCGTTCCCGATGTATTGGCCCTTTGCCAACCAAAATATTTTGGCCGCAAAT
+TTTGA--
+>blaA_2_AY954728
+ATGAAGCACTCTTCGCTACGGCGTGCGCTATTATTAGCCGGTATTACCCTGCCCTTAGTCAATTTTTCGCTGCCAACCTG
+GGCCGCTGCGATTCCGGGGTCATTAGACAAGCAATTGGCAGCACTTGAGCACAGTGCTAACGGTCGTTTAGGCATTGCGA
+TGATTAATACCGGCAATGGCACCAAAATTCTGTATCGCGGAGCTCGACGTTTCCCATTCTGTAGTACTTTTAAGTTTATG
+TTAGCCGCTGCTGTATTGGGTCAAAGCCAATCTCAGCCGAATTTGCTCAATAAGCATATCAATTACCATGAGAGTGATTT
+GTTATCTTATGCCCCCATCACGCGTAAAAATCTGGCGCATGGTATGACAGTTTCTGAATTATGTGCGGCTACCATTCAAT
+ATAGCGATAACACGGCCGCGAATTTATTACTTAAAGAGTTGGGTGGTTTAGCGGCTGTTAATCAGTTTGCTCGCAGTATT
+GGCGATCAGATGTTCAGGTTAGACCGCTGGGAACCGGATTTAAACACCGCACTACCTAATGACCCACGTGATACCACCAC
+TCCTGCGGCTATGGCAGCTAGTATAAATAAATTGGTATTGGGTGATGCATTGCACCCTGCCCAACGAAGCCAACTCACGG
+CATGGCTGAAAGGAAACACCACCGGGGATGCCACGATTCGCGCGGGTGCCCCTACTGACTGGATTGTGGGTGACAAAACA
+GGTAGTGGCGATTACGGAACCACCAATGATATTGCGGTACTTTGGCCGACGAAAGGTGCACCGATTGTTTTAGTGGTGTA
+TTTCACGCAACGTGAAAAAGATGCGAAGCCACGTCGCGATGTATTGGCC--TCTGCGACCAAAATAATTTTGTCGCAAAT
+ATCCTGA
+>consensus
+++++++++++++++++++++++++++++++TTATTAGCCGGTATTACCCTGCCCTTAGTCAATTTTTCGCTACCAACCTG
+GGCCGCTGCGATCCCGGGATCATTAGACAAGCAATTGGCAGCACTTGAGCACAGTGCTAACGGTCGTTTAGGCATTGCGA
+TGATTAATACCGGCAATGGCACCAAAATTCTGTATCGCGGAGCTCGACGTTTCCCATTCTGTAGTACTTTTAAGTTTATG
+TTAGCCGCTGCTGTATTGGGTCAAAGCCAATCTCAGCCGAATTTGCTCAATAAGCATATCAATTACCATGAGAGTGATTT
+GTTATCTTATGCCCCCATCACGCGTAAAAATCTGGCGCATGGTATGACAGTTTCTGAATTATGTGCGGCTACCATTCAAT
+ATAGCGATAACACGGCCGCGAATTTATTACTTAAAGAGTTGGGTGGTTTAGCGGCTGTTAATCAGTTTGCTCGCAGTATT
+GGCGATCAGATGTTCAGGTTAGACCGCTGGGAACCGGATTTAAACACCGCACTACCTAATGACCCACGTGATACCACCAC
+TCCTGCGGCTATGGCAGCTAGTATAAATAAATTGGTATTGGGTGATGCATTGCACCCTGCCCAACGAAGCCAACTCACGG
+CATGGCTGAAAGGAAACACCACCGGGGATGCCACGATTCGCGCGGGTGCCCCTACTGACTGGATTGTGGGTGACAAAACA
+GGTAGTGGCGATTACGGAACCACCAATGATATTGCGGTACTTTGGCCGACGAAAGGTGCACCGATTGTTTTAGTGGTGTA
+TTTCACGCAACGTGAAAAAGATGCAAACCCACGTCCCGATGTATTGGCCCTTCGCCAACCAAAATAATTTGGCCGCAAAT
+ATCCA++
+
diff -r 000000000000 -r 7af6f7dafd22 test-data/resfinder.90/cluster-219.msa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/resfinder.90/cluster-219.msa	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,78 @@
+>*blaB-10_1_AY348325
+---ATGAAAGGATTAAAAGGGCTATTGGTTCTGGCTTTAGGCTTTACAGGACTACAGGTTTTTGGGCAACAGAACCCTGA
+TATTAAAATTGAAAAATTAAAAGATAATTTATACGTCTATACAACCTATAATACCTTCAAAGGAACTAAATATGCGGCTA
+ATGCGGTATATATGGTAACCGATAAAGGAGTAGTGGTTATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACA
+GACGAGATTTATAAAAAGCACGGAAAGAAAGTTATCATGAACATTGCAACCCACTCTCATGATGATAGAGCCGGAGGTCT
+TGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAA
+GAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAAGACTGAGTTTCAGGTTTATTATCCGGGAAAAGGT
+CATACAGCAGATAATGTGGTTGTGTGGTTTCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGTGGTGATTC
+GAAAGACCTTGGGTTTATTGGGGAAGCTTATGTAAACGACTGGACACAGTCCATACACAACATTCAGCAGAAATTTCCCT
+ATGTTCAGTATGTCGTTGCAGGTCATGACGACTGGAAAGATCAAACATCAATACAACATACACTGGATTTAATCAGTGAA
+TATCAACAAAAACAAAAGGCTTCAAATTAA
+>blaB-5_1_AF189303
+ATGTTGAAAAGATTAAAAGGATTATTGGTTCTGGCTTTAGGTTTTACAGGACTACAGGTTTTTGGACAGCAAAATCCTGA
+TATTAAAATTGAAAAATTAAAAGATAATTTATACGTCTATACAACCTATAATACCTTTAAAGGAACTAAATATGCGGCTA
+ATGCGGTATATATGGTAACGGATAAAGGAGTAGTGGTGATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACA
+GACGAGATTTATAAAAAGCACGGAAAGAAAGTCATCATGAACATTGCTACCCATTCTCATGACGATAGAGCCGGAGGTCT
+TGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAA
+GAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAACACTGAGTTCCAGGTCTATTATCCGGGAAAAGGG
+CATACGGCAGATAATGTGGTGGTATGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGTGGTGATTC
+GAAAGACCTTGGATATATTGGAGAAGCTTATGTAAACGACTGGACACAGTCTATACACAATATTCAGCAGAAATTTCCCG
+ATGTTCAGTATGTCGTTGCAGGCCACGATGACTGGAAAGATCAAACATCAATACAACATACACTGGATTTAATCAGTGAT
+TACCAACAAAAACAAAAGGCTTCAAATTAA
+>blaB-6_1_AF189302
+---ATGAAAAGATTAAAAGGATTATTGGTTCTGGCTTTAGGTTTTACAGGACTACAGGTTTTTGGACAGCAAAATCCTGA
+TATTAAAATTGAAAAATTAAAAGATAATTTATACGTCTATACAACCTATAATACCTTTAAAGGAACTAAATATGCGGCTA
+ATGCGGTATATATGGTAACGGATAAAGGAGTAGTGGTGATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACA
+GACGAGATTTATAAAAAGCACGGAAAGAAAGTCATCATGAACATTGCTACCCATTCTCATGACGATAGAGCCGGAGGTCT
+TGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAA
+GAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAACACTGAGTTCCAGGTCTATTATCCGGGAAAAGGT
+CATACAGCAGATAATGTGGTTGTGTGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGCGGTGATTC
+GAAAGACCTTGGGTTTATTGGAGAAGCTTATGTAAACGACTGGACACAGTCCATACACAACATTCAGCAGAAATTTCCCG
+ATGTTCAGTATGTCGTTGCAGGTCACGATGACTGGAAGGATCAAACATCAATACAGCATACACTGGATTTAATCAGTGAA
+TATCAACAAAAACAAAAGGCTTCAAATTAA
+>blaB-7_1_AF189304
+---ATGAAAGGATTAAAAGGGCTATTGGTTCTGGCTTTAGGTTTTACAGGACTACAGGTTTTTGGGCAACAGAACCCTGA
+TATTAAAATTGAAAAATTAAAAGATAATTTATACGTCTATACAACCTATAATACCTTCAAAGGAACTAAATATGCGGCTA
+ATGCGGTATATATGGTAACCGATAAAGGAATAGTGGTTATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACA
+GACGAGATTTATAAAAAGCACGGTAAGAAAGTTATCATGAACATTGCGACCCACTCTCATGATGATAGAGCCGGAGGTCT
+TGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAA
+GAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAAGACTGAGTTTCAGGTCTATTATCCGGGAAAAGGT
+CATACAGCAGATAATGTGGTTGTGTGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGTGGTGATTC
+GAAAGACCTTGGGTTTATTGGAGAAGCTTATGTAAACGACTGGACACAGTCCATACACAATATTCAGCAGAAATTTCCCG
+ATGTTCAGTATGTCGTTGCAGGTCATGACGACTGGAAAGATCAAACATCAATACAACATACACTGGATTTAATCAGTGAA
+TATCAACAAAAACAAAAGGCTTCAAATTAA
+>blaB-8_1_AF189305
+---ATGAAAGGATTAAAAGGACTATTGGTTCTGGCTTTAGGTTTTACAGGACTACAGGTTTTTGGGCAACAGAACCCTGA
+TATTAAAATTGAAAAATTAAAAGATAATTTATACGTCTATACAACATATAATACCTTCAAAGGAACTAAATATGCGGCTA
+ATGCGGTATATATGGTAACCGATAAAGGAGTAGTGGTTATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACA
+GACGAGATTTATAAAAAGCACGGAAAGAAAGTTATCATGAACATTGCGACCCACTCTCATGATGATAGAGCCGGAGGTCT
+TGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAA
+GAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAAGACTGAGTTTCAGGTCTATTATCCAGGAAAAGGT
+CATACAGCAGATAATGTGGTTGTATGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGCGGTGATTC
+GAAAGATCTTGGGTTTATTGGAGAAGCTTATGTAAACGACTGGACACAGTCCATACACAACATTCAGCAGAAATTTCCCG
+ATGTTCAGTATGTCGTTGCAGGTCATGACGACTGGAAAGATCAAACATCAATACAACATACACTGGATTTAATCAGTGAA
+TATCAACAAAAACAAAAGGCTTCAAATTAA
+>blaB-9_1_AY348324
+---ATGAAAGGATTAAAAGGGCTATTGGTTCTGGCTTTAGGCTTTACAGGACTACAGGTTTTTGGGCAACAGAACCCTGA
+TATTAAAATTGAAAAATTAAAAGATAATTTATACGTCTATACAACCTATAATACCTTCAAAGGAACTAAATATGCGGCTA
+ATGCGGTATATATGGTAACCGATAAAGGAGTAGTGGTGATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACA
+GACGAGATTTATAAAAAGCACGGAAAGAAAGTCATCATGAACATTGCTACACATTCTCATGACGATAGAGCCGGAGGTCT
+TGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAA
+GAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAACACTGAGTTCCAGGTCTATTATCCGGGAAAAGGT
+CATACAGCAGATAATGTGGTGGTATGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGCGGTGATTC
+GAAAGACCTTGGGTTTATTGGGGAAGCTTATGTAAACGACTGGACACAGTCCATACACAACATTCAGCAGAAATTTCCCG
+ATGTTCAGTATGTCGTTGCAGGTCATGACGACTGGAAAGATCAAACATCAATACAACATACACTGGATTTAATCAGTGAA
+TATCAACAAAAACAAAAGGCTTCAAATTAA
+>consensus
++++ATGAAAGGATTAAAAGGACTATTGGTTCTGGCTTTAGGTTTTACAGGACTACAGGTTTTTGGGCAACAGAACCCTGA
+TATTAAAATTGAAAAATTAAAAGATAATTTATACGTCTATACAACCTATAATACCTTCAAAGGAACTAAATATGCGGCTA
+ATGCGGTATATATGGTAACCGATAAAGGAGTAGTGGTGATAGACTCTCCATGGGGAGAAGATAAATTTAAAAGTTTTACA
+GACGAGATTTATAAAAAGCACGGAAAGAAAGTCATCATGAACATTGCTACCCACTCTCATGACGATAGAGCCGGAGGTCT
+TGAATATTTTGGTAAACTAGGTGCAAAAACTTATTCTACTAAAATGACAGATTCTATTTTAGCAAAAGAGAATAAGCCAA
+GAGCAAAGTACACTTTTGATAATAATAAATCTTTTAAAGTAGGAAACACTGAGTTCCAGGTCTATTATCCGGGAAAAGGT
+CATACAGCAGATAATGTGGTTGTATGGTTCCCTAAAGACAAAGTATTAGTAGGAGGCTGCATTGTAAAAAGCGGTGATTC
+GAAAGACCTTGGGTTTATTGGAGAAGCTTATGTAAACGACTGGACACAGTCCATACACAACATTCAGCAGAAATTTCCCG
+ATGTTCAGTATGTCGTTGCAGGTCATGACGACTGGAAAGATCAAACATCAATACAACATACACTGGATTTAATCAGTGAA
+TATCAACAAAAACAAAAGGCTTCAAATTAA
+
diff -r 000000000000 -r 7af6f7dafd22 tool-data/groot_database.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/groot_database.loc.sample	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,3 @@
+#This is a sample file distributed with Galaxy that enables tools
+#file has this format (white space characters are TAB characters)
+#V4.0_2022-08-29	7025248	1.5	path/to/db
diff -r 000000000000 -r 7af6f7dafd22 tool_data_table_conf.xml.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.sample	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,7 @@
+<?xml version="1.0"?>
+<tables>
+    <table name="groot_database" comment_char="#">
+        <columns>value, name, path, version</columns>
+        <file path="tool-data/groot_database.loc.sample"/>
+    </table>
+</tables>
diff -r 000000000000 -r 7af6f7dafd22 tool_data_table_conf.xml.test
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.test	Fri Oct 18 08:19:42 2024 +0000
@@ -0,0 +1,7 @@
+<?xml version="1.0"?>
+<tables>
+    <table name="groot_database" comment_char="#">
+        <columns>value, name, path, version</columns>
+        <file path="${__HERE__}/test-data/groot_database.loc" />
+    </table>
+</tables>