comparison gtdbtk_classify_wf.xml @ 8:b907a3c0434f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 1a745528d394ac7cf79ee912da0ee6c6097ad029

7:fce109bc2aa7

    ]]></command>
    <inputs>
        <param name="input" type="data" format="fasta,fasta.gz" multiple="true" label="Fasta (Genome) files"/>
        <param name="gtdbtk_db" type="select" label="GTDB-Tk database" help="This version of GTDB-Tk required GTDB version R207_v2. Please contact your service administrator if this version is not available to select.">
            <options from_data_table="gtdbtk_database_versioned">
                <filter type="regexp" column="3" value="^v2(07|14)$"/>
                <validator type="no_options" message="No locally cached GTDB-Tk database is available"/>
            </options>
        </param>
        <section name="advanced" title="Advanced options">
            <param argument="--min_perc_aa" type="integer" min="0" max="100" value="10" label="Exclude genomes that do not have at least this percentage of AA in the MSA" help="Inclusive bound"/>

8:b907a3c0434f

    ]]></command>
    <inputs>
        <param name="input" type="data" format="fasta,fasta.gz" multiple="true" label="Fasta (Genome) files"/>
        <param name="gtdbtk_db" type="select" label="GTDB-Tk database" help="This version of GTDB-Tk required GTDB version R207_v2. Please contact your service administrator if this version is not available to select.">
            <options from_data_table="gtdbtk_database_versioned">
                <filter type="regexp" column="3" value="^2(07|14)$"/>
                <validator type="no_options" message="No locally cached GTDB-Tk database is available"/>
            </options>
        </param>
        <section name="advanced" title="Advanced options">
            <param argument="--min_perc_aa" type="integer" min="0" max="100" value="10" label="Exclude genomes that do not have at least this percentage of AA in the MSA" help="Inclusive bound"/>