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view test-data/226.0-data/skani/create_genome_paths.sh @ 15:53a019316350 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtdbtk commit 1696bfc7f5bade0686ad6731da06a436c43b59e5
author iuc
date Sun, 05 Oct 2025 13:29:51 +0000
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#!/bin/bash

DATAPATH='database'


for f in $DATAPATH/*.gz
do
  mkdir --parents database/${f:9:3}/${f:13:3}/${f:16:3}/${f:19:3}/ ; mv $f $_
  filef="$(basename -- $f)"
  echo "$filef database/${f:9:3}/${f:13:3}/${f:16:3}/${f:19:3}/ " >> genome_paths.tsv
  #echo "$filef database/${f:9:3}/${f:13:3}/${f:16:3}/${f:19:3}/ "
done