Mercurial > repos > iuc > gtftobed12

annotate test-data/gtf2bed_test_transcript_info.txt @ 2:b026dae67fba draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit 2f9e5a51a632217e4966aa3b8e9d2b88a09a36e3"
author iuc
date Thu, 20 Feb 2020 13:45:34 -0500
parents 75a14cc16d4d
children
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75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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1 #transId geneId source chrom start end strand proteinId geneName transcriptName geneType transcriptType
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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2 ENST00000456328 ENSG00000223972 havana 1 11868 14409 + DDX11L1 DDX11L1-002 transcribed_unprocessed_pseudogene processed_transcript
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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3 ENST00000450305 ENSG00000223972 havana 1 12009 13670 + DDX11L1 DDX11L1-001 transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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4 ENST00000488147 ENSG00000227232 havana 1 14403 29570 - WASH7P WASH7P-001 unprocessed_pseudogene unprocessed_pseudogene
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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5 ENST00000619216 ENSG00000278267 ensembl 1 17368 17436 - MIR6859-1 MIR6859-1-201 miRNA miRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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6 ENST00000473358 ENSG00000243485 havana 1 29553 31097 + RP11-34P13.3 RP11-34P13.3-001 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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7 ENST00000469289 ENSG00000243485 havana 1 30266 31109 + RP11-34P13.3 RP11-34P13.3-002 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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8 ENST00000607096 ENSG00000274890 ensembl 1 30365 30503 + MIR1302-2 MIR1302-2-201 miRNA miRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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9 ENST00000417324 ENSG00000237613 havana 1 34553 36081 - FAM138A FAM138A-001 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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10 ENST00000461467 ENSG00000237613 havana 1 35244 36073 - FAM138A FAM138A-002 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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11 ENST00000606857 ENSG00000268020 havana 1 52472 53312 + OR4G4P OR4G4P-001 unprocessed_pseudogene unprocessed_pseudogene
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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12 ENST00000492842 ENSG00000240361 havana 1 62947 63887 + OR4G11P OR4G11P-001 unprocessed_pseudogene unprocessed_pseudogene
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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13 ENST00000335137 ENSG00000186092 ensembl_havana 1 69090 70008 + ENSP00000334393 OR4F5 OR4F5-001 protein_coding protein_coding
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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14 ENST00000466430 ENSG00000238009 havana 1 89294 120932 - RP11-34P13.7 RP11-34P13.7-001 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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15 ENST00000477740 ENSG00000238009 havana 1 92229 129217 - RP11-34P13.7 RP11-34P13.7-003 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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16 ENST00000471248 ENSG00000238009 havana 1 110952 129173 - RP11-34P13.7 RP11-34P13.7-002 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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17 ENST00000610542 ENSG00000238009 ensembl 1 120724 133723 - RP11-34P13.7 RP11-34P13.7-201 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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18 ENST00000453576 ENSG00000238009 havana 1 129080 133566 - RP11-34P13.7 RP11-34P13.7-004 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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19 ENST00000495576 ENSG00000239945 havana 1 89550 91105 - RP11-34P13.8 RP11-34P13.8-001 lincRNA lincRNA
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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20 ENST00000442987 ENSG00000233750 havana 1 131024 134836 + CICP27 CICP27-001 processed_pseudogene processed_pseudogene
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
parents:
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21 ENST00000494149 ENSG00000268903 havana 1 135140 135895 - RP11-34P13.15 RP11-34P13.15-001 processed_pseudogene processed_pseudogene
75a14cc16d4d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gtfToBed12 commit adc4f5c431fca0bcdf93188b7065bdc4c9c424c6
iuc
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22 ENST00000595919 ENSG00000269981 havana 1 137681 137965 - RP11-34P13.16 RP11-34P13.16-001 processed_pseudogene processed_pseudogene