Mercurial > repos > iuc > hamronize_summarize
diff test-data/summary.tsv @ 0:ef76d74a7171 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization commit 17562209ea2b5b8b28f229a5c305e468b04be58e"
| author | iuc |
|---|---|
| date | Tue, 16 Mar 2021 12:39:05 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summary.tsv Tue Mar 16 12:39:05 2021 +0000 @@ -0,0 +1,155 @@ +input_file_name gene_symbol gene_name reference_database_id reference_database_version reference_accession analysis_software_name analysis_software_version sequence_identity input_sequence_id input_protein_start input_protein_stop input_gene_start input_gene_stop reference_protein_start reference_protein_stop reference_gene_start reference_gene_stop strand_orientation coverage_depth coverage_percentage coverage_ratio reference_gene_length reference_protein_length input_gene_length input_protein_length drug_class antimicrobial_agent resistance_mechanism +GCF_010120755.1_ASM1012075v1_genomic aacA-ENT1 aminoglycoside 6'-N-acetyltransferase ncbi db_v_1 NG_052371.1 abricate tool_v_1 100.0 NZ_CP039729.1 2163439 2163987 - 100.0 AMINOGLYCOSIDE +GCF_010120755.1_ASM1012075v1_genomic aacA-ENT1 aminoglycoside 6'-N-acetyltransferase ncbi db_v_1 NG_052371.1 abricate tool_v_1 100.0 NZ_CP039729.1 2163439 2163987 - 100.0 AMINOGLYCOSIDE +GCF_010120755.1_ASM1012075v1_genomic eat(A) ABC-F type ribosomal protection protein Eat(A) ncbi db_v_1 NG_047762.1 abricate tool_v_1 100.0 NZ_CP039729.1 656118 657620 + 100.0 PLEUROMUTILIN +GCF_010120755.1_ASM1012075v1_genomic eat(A) ABC-F type ribosomal protection protein Eat(A) ncbi db_v_1 NG_047762.1 abricate tool_v_1 100.0 NZ_CP039729.1 656118 657620 + 100.0 PLEUROMUTILIN +GCF_010120755.1_ASM1012075v1_genomic msr(C) ABC-F type ribosomal protection protein Msr(C) ncbi db_v_1 NG_048003.1 abricate tool_v_1 98.92 NZ_CP039729.1 2564038 2565516 - 100.0 MACROLIDE +GCF_010120755.1_ASM1012075v1_genomic msr(C) ABC-F type ribosomal protection protein Msr(C) ncbi db_v_1 NG_048003.1 abricate tool_v_1 98.92 NZ_CP039729.1 2564038 2565516 - 100.0 MACROLIDE +GCF_010120755.1_ASM1012075v1_genomic vanH-M D-lactate dehydrogenase VanH-M ncbi db_v_1 NG_048388.1 abricate tool_v_1 100.0 NZ_CP039730.1 45227 46207 - 100.0 VANCOMYCIN +GCF_010120755.1_ASM1012075v1_genomic vanH-M D-lactate dehydrogenase VanH-M ncbi db_v_1 NG_048388.1 abricate tool_v_1 100.0 NZ_CP039730.1 45227 46207 - 100.0 VANCOMYCIN +GCF_010120755.1_ASM1012075v1_genomic vanM D-alanine--(R)-lactate ligase VanM ncbi db_v_1 NG_048396.1 abricate tool_v_1 100.0 NZ_CP039730.1 44203 45234 - 100.0 VANCOMYCIN +GCF_010120755.1_ASM1012075v1_genomic vanM D-alanine--(R)-lactate ligase VanM ncbi db_v_1 NG_048396.1 abricate tool_v_1 100.0 NZ_CP039730.1 44203 45234 - 100.0 VANCOMYCIN +GCF_010120755.1_ASM1012075v1_genomic vanS-M VanM-type vancomycin resistance histidine kinase VanS ncbi db_v_1 NG_048450.1 abricate tool_v_1 100.0 NZ_CP039730.1 47306 48418 - 100.0 VANCOMYCIN +GCF_010120755.1_ASM1012075v1_genomic vanS-M VanM-type vancomycin resistance histidine kinase VanS ncbi db_v_1 NG_048450.1 abricate tool_v_1 100.0 NZ_CP039730.1 47306 48418 - 100.0 VANCOMYCIN +GCF_010120755.1_ASM1012075v1_genomic vanX-M D-Ala-D-Ala dipeptidase VanX-M ncbi db_v_1 NG_048495.1 abricate tool_v_1 100.0 NZ_CP039730.1 43619 44197 - 95.07 VANCOMYCIN +GCF_010120755.1_ASM1012075v1_genomic vanX-M D-Ala-D-Ala dipeptidase VanX-M ncbi db_v_1 NG_048495.1 abricate tool_v_1 100.0 NZ_CP039730.1 43619 44197 - 95.07 VANCOMYCIN +ariba_report AAC_3__IId AAC_3__IId.3004623.EU022314.1.0_861.5344 dbname db_v_1 AAC_3__IId.3004623.EU022314.1.0_861.5344 ariba ariba_v1 99.88 AAC_3__II-.l15.c4.ctg.1 37.8 861 +ariba_report AAC_3__IId AAC_3__IId.3004623.EU022314.1.0_861.5344 dbname db_v_1 AAC_3__IId.3004623.EU022314.1.0_861.5344 ariba ariba_v1 99.88 AAC_3__II-.l15.c4.ctg.1 37.8 861 +ariba_report AAC_6___Ib4 AAC_6___Ib4.3002577.AF445082.2788_3343.401 dbname db_v_1 AAC_6___Ib4.3002577.AF445082.2788_3343.401 ariba ariba_v1 99.64 AAC_6___Ib+.l15.c30.ctg.1 128.1 555 +ariba_report AAC_6___Ib4 AAC_6___Ib4.3002577.AF445082.2788_3343.401 dbname db_v_1 AAC_6___Ib4.3002577.AF445082.2788_3343.401 ariba ariba_v1 99.64 AAC_6___Ib+.l15.c30.ctg.1 128.1 555 +ariba_report BRP_MBL_ BRP_MBL_.3001205.KC503911.1.9883_10249.5446 dbname db_v_1 BRP_MBL_.3001205.KC503911.1.9883_10249.5446 ariba ariba_v1 100.0 BRP_MBL_.l6.c4.ctg.1 27.3 366 +ariba_report BRP_MBL_ BRP_MBL_.3001205.KC503911.1.9883_10249.5446 dbname db_v_1 BRP_MBL_.3001205.KC503911.1.9883_10249.5446 ariba ariba_v1 100.0 BRP_MBL_.l6.c4.ctg.1 27.3 366 +ariba_report CRP CRP.3000518.AP009048.1.4153663_4154296.4752 dbname db_v_1 CRP.3000518.AP009048.1.4153663_4154296.4752 ariba ariba_v1 93.84 CRP.l15.c4.ctg.1 24.1 633 +ariba_report CRP CRP.3000518.AP009048.1.4153663_4154296.4752 dbname db_v_1 CRP.3000518.AP009048.1.4153663_4154296.4752 ariba ariba_v1 93.84 CRP.l15.c4.ctg.1 24.1 633 +ariba_report CTX_M_15 CTX_M_15.3001878.AY044436.1435_2311.1430 dbname db_v_1 CTX_M_15.3001878.AY044436.1435_2311.1430 ariba ariba_v1 100.0 CTX_M_-.l15.c4.ctg.1 36.0 876 +ariba_report CTX_M_15 CTX_M_15.3001878.AY044436.1435_2311.1430 dbname db_v_1 CTX_M_15.3001878.AY044436.1435_2311.1430 ariba ariba_v1 100.0 CTX_M_-.l15.c4.ctg.1 36.0 876 +ariba_report DHA_7 DHA_7.3002136.HQ456945.0_1140.1865 dbname db_v_1 DHA_7.3002136.HQ456945.0_1140.1865 ariba ariba_v1 100.0 DHA_-.l15.c4.ctg.1 29.8 1140 +ariba_report DHA_7 DHA_7.3002136.HQ456945.0_1140.1865 dbname db_v_1 DHA_7.3002136.HQ456945.0_1140.1865 ariba ariba_v1 100.0 DHA_-.l15.c4.ctg.1 29.8 1140 +ariba_report Escherichia_coli_23S Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164 dbname db_v_1 Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164 ariba ariba_v1 97.1 Escherichia_coli_23S.l15.c17.ctg.1 611.4 2904 +ariba_report Escherichia_coli_23S Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164 dbname db_v_1 Escherichia_coli_23S.3004173.AE014075.1.237159_240063.4164 ariba ariba_v1 97.1 Escherichia_coli_23S.l15.c17.ctg.1 611.4 2904 +ariba_report Escherichia_coli_EF_Tu Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280 dbname db_v_1 Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280 ariba ariba_v1 96.12 Escherichia_coli_EF_Tu.l15.c30.ctg.1 106.2 1185 +ariba_report Escherichia_coli_EF_Tu Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280 dbname db_v_1 Escherichia_coli_EF_Tu.3003370.U00096.3.3470144_3471329.5280 ariba ariba_v1 96.12 Escherichia_coli_EF_Tu.l15.c30.ctg.1 106.2 1185 +ariba_report Escherichia_coli_PtsI Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675 dbname db_v_1 Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675 ariba ariba_v1 91.64 Escherichia_coli_PtsI.l15.c4.ctg.2 23.5 1728 +ariba_report Escherichia_coli_PtsI Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675 dbname db_v_1 Escherichia_coli_PtsI.3003899.HG738867.2416338_2418066.3675 ariba ariba_v1 91.64 Escherichia_coli_PtsI.l15.c4.ctg.2 23.5 1728 +ariba_report FosA6 FosA6.3004111.KU254579.1.59421_59841.4755 dbname db_v_1 FosA6.3004111.KU254579.1.59421_59841.4755 ariba ariba_v1 98.81 FosA-_1.l15.c4.ctg.1 27.2 420 +ariba_report FosA6 FosA6.3004111.KU254579.1.59421_59841.4755 dbname db_v_1 FosA6.3004111.KU254579.1.59421_59841.4755 ariba ariba_v1 98.81 FosA-_1.l15.c4.ctg.1 27.2 420 +ariba_report H_NS H_NS.3000676.BA000007.3.1737690_1738104.5476 dbname db_v_1 H_NS.3000676.BA000007.3.1737690_1738104.5476 ariba ariba_v1 93.69 H_NS.l15.c4.ctg.1 20.6 414 +ariba_report H_NS H_NS.3000676.BA000007.3.1737690_1738104.5476 dbname db_v_1 H_NS.3000676.BA000007.3.1737690_1738104.5476 ariba ariba_v1 93.69 H_NS.l15.c4.ctg.1 20.6 414 +ariba_report Klebsiella_mutant_PhoP Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715 dbname db_v_1 Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715 ariba ariba_v1 100.0 Klebsiella_mutant_PhoP.l6.c4.ctg.1 48.2 672 +ariba_report Klebsiella_mutant_PhoP Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715 dbname db_v_1 Klebsiella_mutant_PhoP.3003585.FO834906.1.2325636_2326308.4715 ariba ariba_v1 100.0 Klebsiella_mutant_PhoP.l6.c4.ctg.1 48.2 672 +ariba_report Klebsiella_pneumoniae_KpnE Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313 dbname db_v_1 Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313 ariba ariba_v1 99.45 Klebsiella_pneumoniae_KpnE.l15.c4.ctg.1 56.7 363 +ariba_report Klebsiella_pneumoniae_KpnE Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313 dbname db_v_1 Klebsiella_pneumoniae_KpnE.3004580.AP006725.1.2483889_2484252.5313 ariba ariba_v1 99.45 Klebsiella_pneumoniae_KpnE.l15.c4.ctg.1 56.7 363 +ariba_report Klebsiella_pneumoniae_KpnF Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312 dbname db_v_1 Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312 ariba ariba_v1 100.0 Klebsiella_pneumoniae_KpnF.l15.c4.ctg.1 45.9 330 +ariba_report Klebsiella_pneumoniae_KpnF Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312 dbname db_v_1 Klebsiella_pneumoniae_KpnF.3004583.AP006725.1.2484238_2484568.5312 ariba ariba_v1 100.0 Klebsiella_pneumoniae_KpnF.l15.c4.ctg.1 45.9 330 +ariba_report Klebsiella_pneumoniae_KpnG Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311 dbname db_v_1 Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311 ariba ariba_v1 99.32 Klebsiella_pneumoniae_KpnG.l15.c4.ctg.1 66.3 1173 +ariba_report Klebsiella_pneumoniae_KpnG Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311 dbname db_v_1 Klebsiella_pneumoniae_KpnG.3004588.ACWO01000051.1.22092_23265.5311 ariba ariba_v1 99.32 Klebsiella_pneumoniae_KpnG.l15.c4.ctg.1 66.3 1173 +ariba_report Klebsiella_pneumoniae_OmpK35 Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852 dbname db_v_1 Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852 ariba ariba_v1 100.0 Klebsiella_pneumoniae_OmpK35.l15.c4.ctg.1 66.2 684 +ariba_report Klebsiella_pneumoniae_OmpK35 Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852 dbname db_v_1 Klebsiella_pneumoniae_OmpK35.3003966.NC_016845.1.1904307_1904991.5852 ariba ariba_v1 100.0 Klebsiella_pneumoniae_OmpK35.l15.c4.ctg.1 66.2 684 +ariba_report Klebsiella_pneumoniae_OmpK36 Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853 dbname db_v_1 Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853 ariba ariba_v1 99.82 Klebsiella_pneumoniae_OmpK36.l15.c4.ctg.1 74.2 1104 +ariba_report Klebsiella_pneumoniae_OmpK36 Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853 dbname db_v_1 Klebsiella_pneumoniae_OmpK36.3003968.NC_016845.1.3727881_3728985.5853 ariba ariba_v1 99.82 Klebsiella_pneumoniae_OmpK36.l15.c4.ctg.1 74.2 1104 +ariba_report Klebsiella_pneumoniae_OmpK37 Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406 dbname db_v_1 Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406 ariba ariba_v1 95.5 Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1 66.2 1125 +ariba_report Klebsiella_pneumoniae_OmpK37 Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406 dbname db_v_1 Klebsiella_pneumoniae_OmpK37.3004122.AJ011502.1.300_1425.4406 ariba ariba_v1 95.5 Klebsiella_pneumoniae_OmpK37.l6.c4.ctg.1 66.2 1125 +ariba_report NDM_1 NDM_1.3000589.FN396876.2406_3219.4450 dbname db_v_1 NDM_1.3000589.FN396876.2406_3219.4450 ariba ariba_v1 100.0 NDM_-.l15.c4.ctg.1 27.2 813 +ariba_report NDM_1 NDM_1.3000589.FN396876.2406_3219.4450 dbname db_v_1 NDM_1.3000589.FN396876.2406_3219.4450 ariba ariba_v1 100.0 NDM_-.l15.c4.ctg.1 27.2 813 +ariba_report OXA_1 OXA_1.3001396.JN420336.1.1399_2230.4668 dbname db_v_1 OXA_1.3001396.JN420336.1.1399_2230.4668 ariba ariba_v1 100.0 OXA_-_3.l15.c4.ctg.1 22.5 831 +ariba_report OXA_1 OXA_1.3001396.JN420336.1.1399_2230.4668 dbname db_v_1 OXA_1.3001396.JN420336.1.1399_2230.4668 ariba ariba_v1 100.0 OXA_-_3.l15.c4.ctg.1 22.5 831 +ariba_report SHV_182 SHV_182.3001364.KP050489.0_861.2124 dbname db_v_1 SHV_182.3001364.KP050489.0_861.2124 ariba ariba_v1 99.88 SHV_-.l15.c4.ctg.1 41.0 861 +ariba_report SHV_182 SHV_182.3001364.KP050489.0_861.2124 dbname db_v_1 SHV_182.3001364.KP050489.0_861.2124 ariba ariba_v1 99.88 SHV_-.l15.c4.ctg.1 41.0 861 +ariba_report acrA acrA.3004041.AJ318073.1.793_1990.3994 dbname db_v_1 acrA.3004041.AJ318073.1.793_1990.3994 ariba ariba_v1 97.74 acrA.l15.c4.ctg.1 61.7 1197 +ariba_report acrA acrA.3004042.DQ679966.299_1493.3995 dbname db_v_1 acrA.3004042.DQ679966.299_1493.3995 ariba ariba_v1 91.19 acrA_1.l15.c4.ctg.1 20.0 1194 +ariba_report acrA acrA.3004041.AJ318073.1.793_1990.3994 dbname db_v_1 acrA.3004041.AJ318073.1.793_1990.3994 ariba ariba_v1 97.74 acrA.l15.c4.ctg.1 61.7 1197 +ariba_report acrA acrA.3004042.DQ679966.299_1493.3995 dbname db_v_1 acrA.3004042.DQ679966.299_1493.3995 ariba ariba_v1 91.19 acrA_1.l15.c4.ctg.1 20.0 1194 +ariba_report acrR acrR.3003373.CP000647.489264_489915.2069 dbname db_v_1 acrR.3003373.CP000647.489264_489915.2069 ariba ariba_v1 99.85 acrR.l6.c4.ctg.1 65.8 651 +ariba_report acrR acrR.3003373.CP000647.489264_489915.2069 dbname db_v_1 acrR.3003373.CP000647.489264_489915.2069 ariba ariba_v1 99.85 acrR.l6.c4.ctg.1 65.8 651 +ariba_report catB3 catB3.3002676.JX101693.1.58200_58833.5450 dbname db_v_1 catB3.3002676.JX101693.1.58200_58833.5450 ariba ariba_v1 100.0 catB3.l15.c4.ctg.1 31.5 633 +ariba_report catB3 catB3.3002676.JX101693.1.58200_58833.5450 dbname db_v_1 catB3.3002676.JX101693.1.58200_58833.5450 ariba ariba_v1 100.0 catB3.l15.c4.ctg.1 31.5 633 +ariba_report fabG fabG.3004049.U00096.3.1150669_1151404.5523 dbname db_v_1 fabG.3004049.U00096.3.1150669_1151404.5523 ariba ariba_v1 92.27 fabG.l15.c4.ctg.1 12.3 735 +ariba_report fabG fabG.3004049.U00096.3.1150669_1151404.5523 dbname db_v_1 fabG.3004049.U00096.3.1150669_1151404.5523 ariba ariba_v1 92.27 fabG.l15.c4.ctg.1 12.3 735 +ariba_report gyrA gyrA.3003940.AE005674.2.2352231_2354859.5265 dbname db_v_1 gyrA.3003940.AE005674.2.2352231_2354859.5265 ariba ariba_v1 92.71 gyrA_9.l6.c17.ctg.2 40.9 2628 +ariba_report gyrA gyrA.3004334.AE006468.2.2373709_2376346.5394 dbname db_v_1 gyrA.3004334.AE006468.2.2373709_2376346.5394 ariba ariba_v1 92.44 gyrA_8.l15.c4.ctg.2 6.7 2637 +ariba_report gyrA gyrA.3003940.AE005674.2.2352231_2354859.5265 dbname db_v_1 gyrA.3003940.AE005674.2.2352231_2354859.5265 ariba ariba_v1 92.71 gyrA_9.l6.c17.ctg.2 40.9 2628 +ariba_report gyrA gyrA.3004334.AE006468.2.2373709_2376346.5394 dbname db_v_1 gyrA.3004334.AE006468.2.2373709_2376346.5394 ariba ariba_v1 92.44 gyrA_8.l15.c4.ctg.2 6.7 2637 +ariba_report oqxA oqxA.3003922.EU370913.1.46651_47827.5460 dbname db_v_1 oqxA.3003922.EU370913.1.46651_47827.5460 ariba ariba_v1 99.23 oqxA.l6.c4.ctg.1 55.6 1176 +ariba_report oqxA oqxA.3003922.EU370913.1.46651_47827.5460 dbname db_v_1 oqxA.3003922.EU370913.1.46651_47827.5460 ariba ariba_v1 99.23 oqxA.l6.c4.ctg.1 55.6 1176 +ariba_report oqxB oqxB.3003923.EU370913.1.47850_51003.5462 dbname db_v_1 oqxB.3003923.EU370913.1.47850_51003.5462 ariba ariba_v1 98.86 oqxB.l15.c4.ctg.1 57.2 3153 +ariba_report oqxB oqxB.3003923.EU370913.1.47850_51003.5462 dbname db_v_1 oqxB.3003923.EU370913.1.47850_51003.5462 ariba ariba_v1 98.86 oqxB.l15.c4.ctg.1 57.2 3153 +ariba_report ramR ramR.3003380.CP000647.1.622039_622621.4572 dbname db_v_1 ramR.3003380.CP000647.1.622039_622621.4572 ariba ariba_v1 100.0 ramR_1.l15.c4.ctg.1 53.5 582 +ariba_report ramR ramR.3003380.CP000647.1.622039_622621.4572 dbname db_v_1 ramR.3003380.CP000647.1.622039_622621.4572 ariba ariba_v1 100.0 ramR_1.l15.c4.ctg.1 53.5 582 +ariba_report rmtC rmtC.3000861.KJ476816.1.79_925.3396 dbname db_v_1 rmtC.3000861.KJ476816.1.79_925.3396 ariba ariba_v1 100.0 rmtC.l15.c17.ctg.1 36.8 846 +ariba_report rmtC rmtC.3000861.KJ476816.1.79_925.3396 dbname db_v_1 rmtC.3000861.KJ476816.1.79_925.3396 ariba ariba_v1 100.0 rmtC.l15.c17.ctg.1 36.8 846 +ariba_report rpoB rpoB.3003288.BA000007.3.4990267_4994296.5493 dbname db_v_1 rpoB.3003288.BA000007.3.4990267_4994296.5493 ariba ariba_v1 94.08 rpoB.l15.c4.ctg.1 30.1 4029 +ariba_report rpoB rpoB.3003288.BA000007.3.4990267_4994296.5493 dbname db_v_1 rpoB.3003288.BA000007.3.4990267_4994296.5493 ariba ariba_v1 93.44 rpoB.l15.c4.ctg.2 33.7 4029 +ariba_report rpoB rpoB.3003288.BA000007.3.4990267_4994296.5493 dbname db_v_1 rpoB.3003288.BA000007.3.4990267_4994296.5493 ariba ariba_v1 94.08 rpoB.l15.c4.ctg.1 30.1 4029 +ariba_report rpoB rpoB.3003288.BA000007.3.4990267_4994296.5493 dbname db_v_1 rpoB.3003288.BA000007.3.4990267_4994296.5493 ariba ariba_v1 93.44 rpoB.l15.c4.ctg.2 33.7 4029 +ariba_report rrsD rrsD.3003512.AE006468.3570463_3572006.3227 dbname db_v_1 rrsD.3003512.AE006468.3570463_3572006.3227 ariba ariba_v1 97.22 rrsB+.l15.c17.ctg.1 765.7 1544 +ariba_report rrsD rrsD.3003512.AE006468.3570463_3572006.3227 dbname db_v_1 rrsD.3003512.AE006468.3570463_3572006.3227 ariba ariba_v1 97.22 rrsB+.l15.c17.ctg.1 765.7 1544 +ariba_report sul1 sul1.3000410.JF969163.1053_1893.340 dbname db_v_1 sul1.3000410.JF969163.1053_1893.340 ariba ariba_v1 99.88 sul1.l15.c17.ctg.1 43.9 840 +ariba_report sul1 sul1.3000410.JF969163.1053_1893.340 dbname db_v_1 sul1.3000410.JF969163.1053_1893.340 ariba ariba_v1 99.88 sul1.l15.c17.ctg.1 43.9 840 +rgi_report AAC(3)-IId AAC(3) CARD card_v1 3004623 rgi rgi_v1 100.0 NODE_39_length_11164_cov_23.0187_6 4569 5429 + 100.0 aminoglycoside antibiotic antibiotic inactivation +rgi_report AAC(3)-IId AAC(3) CARD card_v1 3004623 rgi rgi_v1 100.0 NODE_39_length_11164_cov_23.0187_6 4569 5429 + 100.0 aminoglycoside antibiotic antibiotic inactivation +rgi_report AAC(6')-Ib-cr AAC(6') CARD card_v1 3002547 rgi rgi_v1 95.45 NODE_54_length_1272_cov_25.1921_2 1130 1270 + 23.62 fluoroquinolone antibiotic; aminoglycoside antibiotic antibiotic inactivation +rgi_report AAC(6')-Ib-cr AAC(6') CARD card_v1 3002547 rgi rgi_v1 100.0 NODE_185_length_335_cov_33.8077_1 172 333 + 27.14 fluoroquinolone antibiotic; aminoglycoside antibiotic antibiotic inactivation +rgi_report AAC(6')-Ib-cr AAC(6') CARD card_v1 3002547 rgi rgi_v1 95.45 NODE_54_length_1272_cov_25.1921_2 1130 1270 + 23.62 fluoroquinolone antibiotic; aminoglycoside antibiotic antibiotic inactivation +rgi_report AAC(6')-Ib-cr AAC(6') CARD card_v1 3002547 rgi rgi_v1 100.0 NODE_185_length_335_cov_33.8077_1 172 333 + 27.14 fluoroquinolone antibiotic; aminoglycoside antibiotic antibiotic inactivation +rgi_report AAC(6')-Ib10 AAC(6') CARD card_v1 3002581 rgi rgi_v1 100.0 NODE_69_length_625_cov_55.4398_1 63 623 - 91.63 aminoglycoside antibiotic antibiotic inactivation +rgi_report AAC(6')-Ib10 AAC(6') CARD card_v1 3002581 rgi rgi_v1 100.0 NODE_69_length_625_cov_55.4398_1 63 623 - 91.63 aminoglycoside antibiotic antibiotic inactivation +rgi_report BRP(MBL) Bleomycin resistant protein CARD card_v1 3001205 rgi rgi_v1 100.0 NODE_44_length_4295_cov_23.2123_2 1222 1482 + 71.07 glycopeptide antibiotic antibiotic inactivation +rgi_report BRP(MBL) Bleomycin resistant protein CARD card_v1 3001205 rgi rgi_v1 100.0 NODE_44_length_4295_cov_23.2123_2 1222 1482 + 71.07 glycopeptide antibiotic antibiotic inactivation +rgi_report CBP-1 CBP beta-lactamase CARD card_v1 3004764 rgi rgi_v1 100.0 NODE_19_length_86672_cov_43.8582_38 39587 39811 - 24.03 penam antibiotic inactivation +rgi_report CBP-1 CBP beta-lactamase CARD card_v1 3004764 rgi rgi_v1 100.0 NODE_19_length_86672_cov_43.8582_38 39587 39811 - 24.03 penam antibiotic inactivation +rgi_report CRP resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000518 rgi rgi_v1 99.05 NODE_9_length_203843_cov_42.4911_20 15303 15935 + 100.0 macrolide antibiotic; fluoroquinolone antibiotic; penam antibiotic efflux +rgi_report CRP resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000518 rgi rgi_v1 99.05 NODE_9_length_203843_cov_42.4911_20 15303 15935 + 100.0 macrolide antibiotic; fluoroquinolone antibiotic; penam antibiotic efflux +rgi_report CTX-M-15 CTX-M beta-lactamase CARD card_v1 3001878 rgi rgi_v1 100.0 NODE_47_length_3813_cov_27.9457_4 2763 3638 - 100.0 cephalosporin antibiotic inactivation +rgi_report CTX-M-15 CTX-M beta-lactamase CARD card_v1 3001878 rgi rgi_v1 100.0 NODE_47_length_3813_cov_27.9457_4 2763 3638 - 100.0 cephalosporin antibiotic inactivation +rgi_report DHA-7 DHA beta-lactamase CARD card_v1 3002136 rgi rgi_v1 100.0 NODE_44_length_4295_cov_23.2123_3 1846 2862 - 89.18 cephalosporin; cephamycin antibiotic inactivation +rgi_report DHA-7 DHA beta-lactamase CARD card_v1 3002136 rgi rgi_v1 100.0 NODE_44_length_4295_cov_23.2123_3 1846 2862 - 89.18 cephalosporin; cephamycin antibiotic inactivation +rgi_report Escherichia coli ampH beta-lactamase ampC-type beta-lactamase CARD card_v1 3004612 rgi rgi_v1 85.71 NODE_6_length_262587_cov_42.4347_234 216120 217280 + 100.26 cephalosporin; penam antibiotic inactivation +rgi_report Escherichia coli ampH beta-lactamase ampC-type beta-lactamase CARD card_v1 3004612 rgi rgi_v1 85.71 NODE_6_length_262587_cov_42.4347_234 216120 217280 + 100.26 cephalosporin; penam antibiotic inactivation +rgi_report Escherichia coli mdfA major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3001328 rgi rgi_v1 85.61 NODE_21_length_66123_cov_41.3566_52 60858 62090 + 100.0 tetracycline antibiotic; benzalkonium chloride; rhodamine antibiotic efflux +rgi_report Escherichia coli mdfA major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3001328 rgi rgi_v1 85.61 NODE_21_length_66123_cov_41.3566_52 60858 62090 + 100.0 tetracycline antibiotic; benzalkonium chloride; rhodamine antibiotic efflux +rgi_report FosA6 fosfomycin thiol transferase CARD card_v1 3004111 rgi rgi_v1 97.84 NODE_4_length_367278_cov_42.3139_12 14037 14456 + 100.0 fosfomycin antibiotic inactivation +rgi_report FosA6 fosfomycin thiol transferase CARD card_v1 3004111 rgi rgi_v1 97.84 NODE_4_length_367278_cov_42.3139_12 14037 14456 + 100.0 fosfomycin antibiotic inactivation +rgi_report Klebsiella pneumoniae KpnE major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3004580 rgi rgi_v1 99.17 NODE_27_length_37761_cov_37.6839_21 25311 25673 + 100.0 macrolide antibiotic; aminoglycoside antibiotic; cephalosporin; tetracycline antibiotic; peptide antibiotic; rifamycin antibiotic antibiotic efflux +rgi_report Klebsiella pneumoniae KpnE major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3004580 rgi rgi_v1 99.17 NODE_27_length_37761_cov_37.6839_21 25311 25673 + 100.0 macrolide antibiotic; aminoglycoside antibiotic; cephalosporin; tetracycline antibiotic; peptide antibiotic; rifamycin antibiotic antibiotic efflux +rgi_report Klebsiella pneumoniae KpnF major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3004583 rgi rgi_v1 100.0 NODE_27_length_37761_cov_37.6839_22 25660 25989 + 100.0 macrolide antibiotic; aminoglycoside antibiotic; cephalosporin; tetracycline antibiotic; peptide antibiotic; rifamycin antibiotic antibiotic efflux +rgi_report Klebsiella pneumoniae KpnF major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3004583 rgi rgi_v1 100.0 NODE_27_length_37761_cov_37.6839_22 25660 25989 + 100.0 macrolide antibiotic; aminoglycoside antibiotic; cephalosporin; tetracycline antibiotic; peptide antibiotic; rifamycin antibiotic antibiotic efflux +rgi_report Klebsiella pneumoniae KpnG major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3004588 rgi rgi_v1 99.74 NODE_1_length_803036_cov_42.265_81 80036 81208 + 100.0 macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem antibiotic efflux +rgi_report Klebsiella pneumoniae KpnG major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3004588 rgi rgi_v1 99.74 NODE_1_length_803036_cov_42.265_81 80036 81208 + 100.0 macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem antibiotic efflux +rgi_report Klebsiella pneumoniae KpnH major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3004597 rgi rgi_v1 94.02 NODE_1_length_803036_cov_42.265_82 81224 82762 + 100.0 macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem antibiotic efflux +rgi_report Klebsiella pneumoniae KpnH major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3004597 rgi rgi_v1 94.02 NODE_1_length_803036_cov_42.265_82 81224 82762 + 100.0 macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem antibiotic efflux +rgi_report Klebsiella pneumoniae acrA resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3004041 rgi rgi_v1 95.24 NODE_6_length_262587_cov_42.4347_106 86156 87349 + 99.75 fluoroquinolone antibiotic; cephalosporin; glycylcycline; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan antibiotic efflux +rgi_report Klebsiella pneumoniae acrA resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3004041 rgi rgi_v1 95.24 NODE_6_length_262587_cov_42.4347_106 86156 87349 + 99.75 fluoroquinolone antibiotic; cephalosporin; glycylcycline; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan antibiotic efflux +rgi_report NDM-1 NDM beta-lactamase CARD card_v1 3000589 rgi rgi_v1 100.0 NODE_44_length_4295_cov_23.2123_1 301 1113 + 100.0 carbapenem; cephalosporin; cephamycin; penam antibiotic inactivation +rgi_report NDM-1 NDM beta-lactamase CARD card_v1 3000589 rgi rgi_v1 100.0 NODE_44_length_4295_cov_23.2123_1 301 1113 + 100.0 carbapenem; cephalosporin; cephamycin; penam antibiotic inactivation +rgi_report OXA-1 OXA beta-lactamase CARD card_v1 3001396 rgi rgi_v1 100.0 NODE_51_length_1731_cov_22.5767_1 196 1026 + 100.0 cephalosporin; penam antibiotic inactivation +rgi_report OXA-1 OXA beta-lactamase CARD card_v1 3001396 rgi rgi_v1 100.0 NODE_51_length_1731_cov_22.5767_1 196 1026 + 100.0 cephalosporin; penam antibiotic inactivation +rgi_report PmrF pmr phosphoethanolamine transferase CARD card_v1 3003578 rgi rgi_v1 83.69 NODE_9_length_203843_cov_42.4911_123 130217 131200 - 101.55 peptide antibiotic antibiotic target alteration +rgi_report PmrF pmr phosphoethanolamine transferase CARD card_v1 3003578 rgi rgi_v1 83.69 NODE_9_length_203843_cov_42.4911_123 130217 131200 - 101.55 peptide antibiotic antibiotic target alteration +rgi_report SHV-11 SHV beta-lactamase CARD card_v1 3001070 rgi rgi_v1 100.0 NODE_11_length_157792_cov_39.2115_132 128890 129750 + 100.0 carbapenem; cephalosporin; penam antibiotic inactivation +rgi_report SHV-11 SHV beta-lactamase CARD card_v1 3001070 rgi rgi_v1 100.0 NODE_11_length_157792_cov_39.2115_132 128890 129750 + 100.0 carbapenem; cephalosporin; penam antibiotic inactivation +rgi_report acrB resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000216 rgi rgi_v1 91.52 NODE_6_length_262587_cov_42.4347_107 87372 90518 + 99.9 fluoroquinolone antibiotic; cephalosporin; glycylcycline; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan antibiotic efflux +rgi_report acrB resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000216 rgi rgi_v1 91.52 NODE_6_length_262587_cov_42.4347_107 87372 90518 + 99.9 fluoroquinolone antibiotic; cephalosporin; glycylcycline; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan antibiotic efflux +rgi_report acrD resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000491 rgi rgi_v1 90.94 NODE_3_length_454317_cov_40.2449_285 330238 333351 + 100.0 aminoglycoside antibiotic antibiotic efflux +rgi_report acrD resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000491 rgi rgi_v1 90.94 NODE_3_length_454317_cov_40.2449_285 330238 333351 + 100.0 aminoglycoside antibiotic antibiotic efflux +rgi_report baeR resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000828 rgi rgi_v1 90.83 NODE_3_length_454317_cov_40.2449_18 26745 27467 + 100.0 aminoglycoside antibiotic; aminocoumarin antibiotic antibiotic efflux +rgi_report baeR resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000828 rgi rgi_v1 90.83 NODE_3_length_454317_cov_40.2449_18 26745 27467 + 100.0 aminoglycoside antibiotic; aminocoumarin antibiotic antibiotic efflux +rgi_report catB3 chloramphenicol acetyltransferase (CAT) CARD card_v1 3002676 rgi rgi_v1 100.0 NODE_51_length_1731_cov_22.5767_2 1164 1712 + 86.67 phenicol antibiotic antibiotic inactivation +rgi_report catB3 chloramphenicol acetyltransferase (CAT) CARD card_v1 3002676 rgi rgi_v1 100.0 NODE_51_length_1731_cov_22.5767_2 1164 1712 + 86.67 phenicol antibiotic antibiotic inactivation +rgi_report emrR major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3000516 rgi rgi_v1 92.57 NODE_1_length_803036_cov_42.265_80 79380 79910 + 100.0 fluoroquinolone antibiotic antibiotic efflux +rgi_report emrR major facilitator superfamily (MFS) antibiotic efflux pump CARD card_v1 3000516 rgi rgi_v1 92.57 NODE_1_length_803036_cov_42.265_80 79380 79910 + 100.0 fluoroquinolone antibiotic antibiotic efflux +rgi_report marA resistance-nodulation-cell division (RND) antibiotic efflux pump; General Bacterial Porin with reduced permeability to beta-lactams CARD card_v1 3000263 rgi rgi_v1 92.74 NODE_11_length_157792_cov_39.2115_112 108413 108787 + 97.64 fluoroquinolone antibiotic; monobactam; carbapenem; cephalosporin; glycylcycline; cephamycin; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan; penem antibiotic efflux; reduced permeability to antibiotic +rgi_report marA resistance-nodulation-cell division (RND) antibiotic efflux pump; General Bacterial Porin with reduced permeability to beta-lactams CARD card_v1 3000263 rgi rgi_v1 92.74 NODE_11_length_157792_cov_39.2115_112 108413 108787 + 97.64 fluoroquinolone antibiotic; monobactam; carbapenem; cephalosporin; glycylcycline; cephamycin; penam; tetracycline antibiotic; rifamycin antibiotic; phenicol antibiotic; triclosan; penem antibiotic efflux; reduced permeability to antibiotic +rgi_report mdtB resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000793 rgi rgi_v1 90.1 NODE_3_length_454317_cov_40.2449_14 17656 20778 + 100.0 aminocoumarin antibiotic antibiotic efflux +rgi_report mdtB resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000793 rgi rgi_v1 90.1 NODE_3_length_454317_cov_40.2449_14 17656 20778 + 100.0 aminocoumarin antibiotic antibiotic efflux +rgi_report mdtC resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000794 rgi rgi_v1 91.41 NODE_3_length_454317_cov_40.2449_15 20779 23856 + 100.0 aminocoumarin antibiotic antibiotic efflux +rgi_report mdtC resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3000794 rgi rgi_v1 91.41 NODE_3_length_454317_cov_40.2449_15 20779 23856 + 100.0 aminocoumarin antibiotic antibiotic efflux +rgi_report msbA ATP-binding cassette (ABC) antibiotic efflux pump CARD card_v1 3003950 rgi rgi_v1 92.78 NODE_8_length_247415_cov_40.5207_219 227800 229548 - 100.0 nitroimidazole antibiotic antibiotic efflux +rgi_report msbA ATP-binding cassette (ABC) antibiotic efflux pump CARD card_v1 3003950 rgi rgi_v1 92.78 NODE_8_length_247415_cov_40.5207_219 227800 229548 - 100.0 nitroimidazole antibiotic antibiotic efflux +rgi_report oqxA resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3003922 rgi rgi_v1 100.0 NODE_1_length_803036_cov_42.265_33 30758 31933 + 100.0 fluoroquinolone antibiotic; glycylcycline; tetracycline antibiotic; diaminopyrimidine antibiotic; nitrofuran antibiotic antibiotic efflux +rgi_report oqxA resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3003922 rgi rgi_v1 100.0 NODE_1_length_803036_cov_42.265_33 30758 31933 + 100.0 fluoroquinolone antibiotic; glycylcycline; tetracycline antibiotic; diaminopyrimidine antibiotic; nitrofuran antibiotic antibiotic efflux +rgi_report oqxB resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3003923 rgi rgi_v1 99.52 NODE_1_length_803036_cov_42.265_34 31957 35109 + 100.0 fluoroquinolone antibiotic; glycylcycline; tetracycline antibiotic; diaminopyrimidine antibiotic; nitrofuran antibiotic antibiotic efflux +rgi_report oqxB resistance-nodulation-cell division (RND) antibiotic efflux pump CARD card_v1 3003923 rgi rgi_v1 99.52 NODE_1_length_803036_cov_42.265_34 31957 35109 + 100.0 fluoroquinolone antibiotic; glycylcycline; tetracycline antibiotic; diaminopyrimidine antibiotic; nitrofuran antibiotic antibiotic efflux +rgi_report rmtC 16S rRNA methyltransferase (G1405) CARD card_v1 3000861 rgi rgi_v1 100.0 NODE_40_length_7360_cov_24.8738_6 6358 7203 - 100.0 aminoglycoside antibiotic antibiotic target alteration +rgi_report rmtC 16S rRNA methyltransferase (G1405) CARD card_v1 3000861 rgi rgi_v1 100.0 NODE_40_length_7360_cov_24.8738_6 6358 7203 - 100.0 aminoglycoside antibiotic antibiotic target alteration +rgi_report sul1 sulfonamide resistant sul CARD card_v1 3000410 rgi rgi_v1 100.0 NODE_57_length_1134_cov_34.8908_1 25 864 - 100.0 sulfonamide antibiotic antibiotic target replacement +rgi_report sul1 sulfonamide resistant sul CARD card_v1 3000410 rgi rgi_v1 100.0 NODE_57_length_1134_cov_34.8908_1 25 864 - 100.0 sulfonamide antibiotic antibiotic target replacement