view test-data/hamronized_abricate.json @ 1:a84e3131ae6a draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization commit b872ea086ebd98be64839e7bbb1ddf7a181943d0"

[{"input_file_name": "GCF_010120755.1_ASM1012075v1_genomic", "gene_symbol": "eat(A)", "gene_name": "ABC-F type ribosomal protection protein Eat(A)", "reference_database_id": "ncbi", "reference_database_version": "db_v_1", "reference_accession": "NG_047762.1", "analysis_software_name": "abricate", "analysis_software_version": "tool_v_1", "sequence_identity": "100.0", "input_sequence_id": "NZ_CP039729.1", "input_protein_start": "", "input_protein_stop": "", "input_gene_start": "656118", "input_gene_stop": "657620", "reference_protein_start": "", "reference_protein_stop": "", "reference_gene_start": "", "reference_gene_stop": "", "strand_orientation": "+", "coverage_depth": "", "coverage_percentage": "100.0", "coverage_ratio": "", "reference_gene_length": "", "reference_protein_length": "", "input_gene_length": "", "input_protein_length": "", "drug_class": "PLEUROMUTILIN", "antimicrobial_agent": "", "resistance_mechanism": ""}, {"input_file_name": "GCF_010120755.1_ASM1012075v1_genomic", "gene_symbol": "aacA-ENT1", "gene_name": "aminoglycoside 6'-N-acetyltransferase", "reference_database_id": "ncbi", "reference_database_version": "db_v_1", "reference_accession": "NG_052371.1", "analysis_software_name": "abricate", "analysis_software_version": "tool_v_1", "sequence_identity": "100.0", "input_sequence_id": "NZ_CP039729.1", "input_protein_start": "", "input_protein_stop": "", "input_gene_start": "2163439", "input_gene_stop": "2163987", "reference_protein_start": "", "reference_protein_stop": "", "reference_gene_start": "", "reference_gene_stop": "", "strand_orientation": "-", "coverage_depth": "", "coverage_percentage": "100.0", "coverage_ratio": "", "reference_gene_length": "", "reference_protein_length": "", "input_gene_length": "", "input_protein_length": "", "drug_class": "AMINOGLYCOSIDE", "antimicrobial_agent": "", "resistance_mechanism": ""}, {"input_file_name": "GCF_010120755.1_ASM1012075v1_genomic", "gene_symbol": "msr(C)", "gene_name": "ABC-F type ribosomal protection protein Msr(C)", "reference_database_id": "ncbi", "reference_database_version": "db_v_1", "reference_accession": "NG_048003.1", "analysis_software_name": "abricate", "analysis_software_version": "tool_v_1", "sequence_identity": "98.92", "input_sequence_id": "NZ_CP039729.1", "input_protein_start": "", "input_protein_stop": "", "input_gene_start": "2564038", "input_gene_stop": "2565516", "reference_protein_start": "", "reference_protein_stop": "", "reference_gene_start": "", "reference_gene_stop": "", "strand_orientation": "-", "coverage_depth": "", "coverage_percentage": "100.0", "coverage_ratio": "", "reference_gene_length": "", "reference_protein_length": "", "input_gene_length": "", "input_protein_length": "", "drug_class": "MACROLIDE", "antimicrobial_agent": "", "resistance_mechanism": ""}, {"input_file_name": "GCF_010120755.1_ASM1012075v1_genomic", "gene_symbol": "vanX-M", "gene_name": "D-Ala-D-Ala dipeptidase VanX-M", "reference_database_id": "ncbi", "reference_database_version": "db_v_1", "reference_accession": "NG_048495.1", "analysis_software_name": "abricate", "analysis_software_version": "tool_v_1", "sequence_identity": "100.0", "input_sequence_id": "NZ_CP039730.1", "input_protein_start": "", "input_protein_stop": "", "input_gene_start": "43619", "input_gene_stop": "44197", "reference_protein_start": "", "reference_protein_stop": "", "reference_gene_start": "", "reference_gene_stop": "", "strand_orientation": "-", "coverage_depth": "", "coverage_percentage": "95.07", "coverage_ratio": "", "reference_gene_length": "", "reference_protein_length": "", "input_gene_length": "", "input_protein_length": "", "drug_class": "VANCOMYCIN", "antimicrobial_agent": "", "resistance_mechanism": ""}, {"input_file_name": "GCF_010120755.1_ASM1012075v1_genomic", "gene_symbol": "vanM", "gene_name": "D-alanine--(R)-lactate ligase VanM", "reference_database_id": "ncbi", "reference_database_version": "db_v_1", "reference_accession": "NG_048396.1", "analysis_software_name": "abricate", "analysis_software_version": "tool_v_1", "sequence_identity": "100.0", "input_sequence_id": "NZ_CP039730.1", "input_protein_start": "", "input_protein_stop": "", "input_gene_start": "44203", "input_gene_stop": "45234", "reference_protein_start": "", "reference_protein_stop": "", "reference_gene_start": "", "reference_gene_stop": "", "strand_orientation": "-", "coverage_depth": "", "coverage_percentage": "100.0", "coverage_ratio": "", "reference_gene_length": "", "reference_protein_length": "", "input_gene_length": "", "input_protein_length": "", "drug_class": "VANCOMYCIN", "antimicrobial_agent": "", "resistance_mechanism": ""}, {"input_file_name": "GCF_010120755.1_ASM1012075v1_genomic", "gene_symbol": "vanH-M", "gene_name": "D-lactate dehydrogenase VanH-M", "reference_database_id": "ncbi", "reference_database_version": "db_v_1", "reference_accession": "NG_048388.1", "analysis_software_name": "abricate", "analysis_software_version": "tool_v_1", "sequence_identity": "100.0", "input_sequence_id": "NZ_CP039730.1", "input_protein_start": "", "input_protein_stop": "", "input_gene_start": "45227", "input_gene_stop": "46207", "reference_protein_start": "", "reference_protein_stop": "", "reference_gene_start": "", "reference_gene_stop": "", "strand_orientation": "-", "coverage_depth": "", "coverage_percentage": "100.0", "coverage_ratio": "", "reference_gene_length": "", "reference_protein_length": "", "input_gene_length": "", "input_protein_length": "", "drug_class": "VANCOMYCIN", "antimicrobial_agent": "", "resistance_mechanism": ""}, {"input_file_name": "GCF_010120755.1_ASM1012075v1_genomic", "gene_symbol": "vanS-M", "gene_name": "VanM-type vancomycin resistance histidine kinase VanS", "reference_database_id": "ncbi", "reference_database_version": "db_v_1", "reference_accession": "NG_048450.1", "analysis_software_name": "abricate", "analysis_software_version": "tool_v_1", "sequence_identity": "100.0", "input_sequence_id": "NZ_CP039730.1", "input_protein_start": "", "input_protein_stop": "", "input_gene_start": "47306", "input_gene_stop": "48418", "reference_protein_start": "", "reference_protein_stop": "", "reference_gene_start": "", "reference_gene_stop": "", "strand_orientation": "-", "coverage_depth": "", "coverage_percentage": "100.0", "coverage_ratio": "", "reference_gene_length": "", "reference_protein_length": "", "input_gene_length": "", "input_protein_length": "", "drug_class": "VANCOMYCIN", "antimicrobial_agent": "", "resistance_mechanism": ""}]