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comparison test-data/mykrobe/mykrobe.json @ 4:cbfa52c8f1ef draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization commit b49fc153425676a82e77dec090676403112bcbe6
author iuc
date Tue, 05 Mar 2024 19:47:12 +0000
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equal deleted inserted replaced
3:e13b801516dd 4:cbfa52c8f1ef
1 {
2 "SRR6916544": {
3 "susceptibility": {
4 "Rifampicin": {
5 "predict": "r",
6 "called_by": {
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33 }
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38 "contamination_depths": [],
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40 "conf": 3458
41 },
42 "_cls": "Call.VariantCall"
43 }
44 }
45 }
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47 "phylogenetics": {
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52 }
53 },
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58 }
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60 "species": {
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64 }
65 },
66 "lineage": {
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69 "lineage3"
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79 }
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86 }
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196 }
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205 "_cls": "Call.VariantCall"
206 }
207 }
208 },
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246 "_cls": "Call.VariantCall"
247 }
248 }
249 }
250 }
251 }
252 },
253 "kmer": 21,
254 "probe_sets": [
255 "/home/pvh/miniconda3/envs/mykrobe/lib/python3.9/site-packages/mykrobe/data/tb/tb-species-170421.fasta.gz",
256 "/home/pvh/miniconda3/envs/mykrobe/lib/python3.9/site-packages/mykrobe/data/tb/tb-hunt-probe-set-jan-03-2019.fasta.gz",
257 "/home/pvh/miniconda3/envs/mykrobe/lib/python3.9/site-packages/mykrobe/data/tb/tb.lineage.20200930.probes.fa.gz"
258 ],
259 "files": [
260 "../SRR6916544_1.fastq.gz",
261 "../SRR6916544_2.fastq.gz"
262 ],
263 "version": {
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265 "mykrobe-atlas": "v0.10.0"
266 },
267 "genotype_model": "kmer_count"
268 }
269 }