Mercurial > repos > iuc > heinz

diff heinz_scoring.py @ 1:5f589c91566e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heinz commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
author iuc
date Tue, 30 Oct 2018 18:57:02 -0400
parents e41ec5af7472
children
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line diff
--- a/heinz_scoring.py	Thu Aug 02 11:57:44 2018 -0400
+++ b/heinz_scoring.py	Tue Oct 30 18:57:02 2018 -0400
@@ -85,10 +85,7 @@
 # Calculate the scores
 input_pvalues = pd.read_csv(args.nodes, sep='\t', names=['node', 'pvalue'])
 input_pvalues.loc[:, 'score'] = input_pvalues.pvalue.apply(lambda x:
-                                                           (alpha - 1) *
-                                                           (np.log(x) -
-                                                            np.log(
-                                                                p_threshold)))
+                                                           (alpha - 1) * (np.log(x) - np.log(p_threshold)))
 # print(input_pvalues.loc[:, ['node', 'score']])
 input_pvalues.loc[:, ['node', 'score']].to_csv(args.output, sep='\t',
                                                index=False, header=False)