Mercurial > repos > iuc > hicexplorer_hicbuildmatrixmicroc
diff test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 0:bce0ab313a89 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
| author | iuc |
|---|---|
| date | Thu, 05 Dec 2024 18:08:13 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report Thu Dec 05 18:08:13 2024 +0000 @@ -0,0 +1,13 @@ +# Created with chicQualityControl version 3.7.6 +# QC report for matrices: 0_matrix.cool 1_matrix.cool +#Sparsity threshold for rejection: sparsity <= 0.05 are rejected. + +Number of reference points: 43 +Number of accepted reference points: 35 +Number of rejected reference points: 8 +Number of faulty reference points: 0 + + +A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. +It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. +Please check the results of hicInfo to validate this for your data.