Mercurial > repos > iuc > hisat2

comparison hisat2.xml @ 11:e926afbd9e10 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit 2d92a777711babd19c84dfa0db806d33e386afc7-dirty
author iuc
date Mon, 10 Apr 2017 23:17:56 -0400
parents da8d655e2154
children 2ec097c8e843
comparison
equal deleted inserted replaced
10:da8d655e2154 11:e926afbd9e10
38 -U '${read1}' 38 -U '${read1}'
39 #if str( $input_format.paired.unaligned_file ) == "true": 39 #if str( $input_format.paired.unaligned_file ) == "true":
40 #if $compressed == "GZ": 40 #if $compressed == "GZ":
41 --un-gz '$output_unaligned_reads_l' 41 --un-gz '$output_unaligned_reads_l'
42 #else if $compressed == "BZ2": 42 #else if $compressed == "BZ2":
43 --un-gz '$output_unaligned_reads_l' 43 --un-bz2 '$output_unaligned_reads_l'
44 #else: 44 #else:
45 --un '$output_unaligned_reads_l' 45 --un '$output_unaligned_reads_l'
46 #end if 46 #end if
47 #end if 47 #end if
48 #if str( $input_format.paired.aligned_file ) == "true": 48 #if str( $input_format.paired.aligned_file ) == "true":