diff hisat2.xml @ 20:6ab42baa56e9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit d9ebd463afa1a41799aa53e9a68d0ea51093007e

--- a/hisat2.xml	Tue Apr 10 18:41:43 2018 -0400
+++ b/hisat2.xml	Wed May 30 12:02:20 2018 -0400
@@ -536,31 +536,38 @@
     <outputs>
 
         <!-- BAM -->
-        <data name="output_alignments" format="bam" label="${tool.name} on ${on_string}: aligned reads (BAM) " />
+        <data name="output_alignments" format="bam" label="${tool.name} on ${on_string}: aligned reads (BAM)">
+            <expand macro="dbKeyActions" />
+        </data>
 
         <!-- Unaligned fastq (L) -->
         <data name="output_unaligned_reads_l" format="fastqsanger" label="${tool.name} on ${on_string}: unaligned reads (L)">
             <filter>adv['output_options']['output_options_selector'] == "advanced" and adv['output_options']['unaligned_file'] is True</filter>
+            <expand macro="dbKeyActions" />
         </data>
 
         <!-- Aligned fastq (L) -->
         <data name="output_aligned_reads_l" format="fastqsanger" label="${tool.name} on ${on_string}: aligned reads (L)">
             <filter>adv['output_options']['output_options_selector'] == "advanced" and adv['output_options']['aligned_file'] is True</filter>
+            <expand macro="dbKeyActions" />
         </data>
 
         <!-- Unaligned fastq (R) -->
         <data name="output_unaligned_reads_r" format="fastqsanger" label="${tool.name} on ${on_string}: unaligned reads (R)">
             <filter>(library['type'] == 'paired' or library['type'] == 'paired_collection') and (adv['output_options']['output_options_selector'] == "advanced" and adv['output_options']['unaligned_file'] is True) </filter>
+            <expand macro="dbKeyActions" />
         </data>
 
         <!-- Aligned fastq (R) -->
         <data name="output_aligned_reads_r" format="fastqsanger" label="${tool.name} on ${on_string}: aligned reads (R)">
             <filter>(library['type'] == 'paired' or library['type'] == 'paired_collection') and (adv['output_options']['output_options_selector'] == "advanced" and adv['output_options']['aligned_file'] is True) </filter>
+            <expand macro="dbKeyActions" />
         </data>
 
         <!-- Alignment summary file -->
         <data name="summary_file"  format="txt" from_work_dir="summary.txt" label="${tool.name} on ${on_string}: Mapping summary" >
           <filter>sum['summary_file'] is True</filter>
+          <expand macro="dbKeyActions" />
         </data>
 
     </outputs>