diff hisat2_macros.xml @ 2:c37b4554f794 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat2 commit a2aaa7c9fe7b343f95450ec428250317696a9fb7

--- a/hisat2_macros.xml	Sat Oct 10 16:24:47 2015 -0400
+++ b/hisat2_macros.xml	Fri Jan 15 03:33:11 2016 -0500
@@ -25,12 +25,12 @@
                 <expand macro="paired_end_conditional" />
             </when>
             <when value="paired">
-                <param format="@FTYPE@" label="Forward reads" multiple="true" name="reads_f" type="data" />
-                <param format="@FTYPE@" label="Reverse reads" multiple="true" name="reads_r" type="data" />
+                <param format="@FTYPE@" label="Forward reads" name="reads_f" type="data" />
+                <param format="@FTYPE@" label="Reverse reads" name="reads_r" type="data" />
                 <expand macro="paired_end_conditional" />
             </when>
             <when value="single">
-                <param format="@FTYPE@" label="Reads" multiple="true" name="reads" type="data" />
+                <param format="@FTYPE@" label="Reads" name="reads" type="data" />
             </when>
         </conditional>
     </xml>
@@ -56,7 +56,7 @@
             ${input_format.paired.paired_end_options.no_discordant}
         #end if
     </token>
-    <token name="strandedness_parameters">
+    <token name="@strandedness_parameters@">
         #if str($spliced_options.spliced_options_selector) == "advanced":
             #if str($spliced_options.rna_strandness).strip() != '':
                 --rna-strandness $spliced_options.rna_strandness