# HG changeset patch
# User iuc
# Date 1523400103 14400
# Node ID fbf98f24097ba67ac3b6911f09ba874df9fe1639
# Parent  764756ab0eb5b257904281e017a7f1ee563917df
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c

diff -r 764756ab0eb5 -r fbf98f24097b hisat2.xml
--- a/hisat2.xml	Mon Mar 26 17:23:52 2018 -0400
+++ b/hisat2.xml	Tue Apr 10 18:41:43 2018 -0400
@@ -14,6 +14,8 @@
     </stdio>
     <version_command>hisat2 --version</version_command>
     <command><![CDATA[
+## Use pipefail if available to quit with first non-zero exit code
+set -o | grep -q pipefail && set -o pipefail;
 
 ## Prepare HISAT2 index