Mercurial > repos > iuc > hisat2
changeset 0:5bafe7d7a55e draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/hisat2 commit 1e8d3feeb391aabcfff2338b57913138deea51ec-dirty
| author | iuc |
|---|---|
| date | Sat, 10 Oct 2015 14:54:39 -0400 |
| parents | |
| children | 6d4d39720545 |
| files | hisat2.xml hisat2_macros.xml test-data/hisat_input_1_forward.fastq test-data/hisat_input_1_reverse.fastq test-data/hisat_input_2_forward.fastq test-data/hisat_input_2_reverse.fastq test-data/hisat_output_1.bam test-data/hisat_output_2.bam test-data/hisat_output_3.bam test-data/phiX.fa tool-data/hisat2_indexes.loc.sample tool_data_table_conf.xml.sample tool_dependencies.xml |
| diffstat | 13 files changed, 4684 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/hisat2.xml Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,404 @@ +<?xml version="1.0"?> +<tool id="hisat2" name="HISAT2" version="1.0.0"> + <description>A fast and sensitive alignment program</description> + <macros> + <import>hisat2_macros.xml</import> + </macros> + <requirements> + <requirement type="package" version="2.0">hisat</requirement> + <requirement type="package" version="1.2">samtools</requirement> + </requirements> + <stdio> + <regex match="hisat2-align exited with value 1" source="both" level="fatal"/> + <exit_code range="1:" /> + </stdio> + <version_command>hisat2 --version</version_command> + <command> + <![CDATA[ + #if str($spliced_options.spliced_options_selector) == "advanced" and str($spliced_options.known_splice_gtf) != 'None': + ln -s "${spliced_options.known_splice_gtf}" splice_sites.gtf && + extract_splice_sites.py splice_sites.gtf > splice_sites.txt && + #end if + #if $reference_genome.reference_genome_source == "history": + ln -s "$reference_genome.history_item" genome.fa && + hisat2-build genome.fa genome && + #set index_path = 'genome' + #else: + #set index_path = $reference_genome.index.fields.path + #end if + hisat2 -p \${GALAXY_SLOTS:-1} -x "${index_path}" + #if str($input_format.paired.paired_selector) == 'paired': + -1 "${reads_f}" -2 "${reads_r}" + @paired_end_options@ + #else if str($input_format.paired.paired_selector) == 'paired_collection': + -1 "${input_format.paired.reads.forward}" -2 "${input_format.paired.reads.reverse}" + @paired_end_options@ + #else: + -U "${input_format.paired.reads}" + #end if + #if $input_format.input_format_selector == 'fasta': + -f + #end if + #if $max_primary: + -k ${max_primary} + #end if + #if str($input_options.input_options_selector) == "advanced": + #if int( $input_options.skip ) > 0: + -s ${input_options.skip} + #end if + #if int( $input_options.stop_after ) > 0: + -u ${input_options.stop_after} + #end if + -5 ${input_options.trim_five} -3 ${input_options.trim_three} + #end if + #if str($scoring_options.scoring_options_selector) == "advanced": + --ma ${scoring_options.match_bonus} --np ${scoring_options.ambiguous_penalty} + --mp ${scoring_options.max_mismatch},${scoring_options.min_mismatch} + --rdg ${scoring_options.read_open_penalty},${scoring_options.read_extend_penalty} + --rfg ${scoring_options.ref_open_penalty},${scoring_options.ref_extend_penalty} + --sp ${scoring_options.soft_clip_penalty_max},${scoring_options.soft_clip_penalty_min} + --score-min ${scoring_options.function_type},${scoring_options.constant_term},${scoring_options.coefficient} + #end if + #if str($alignment_options.alignment_options_selector) == "advanced": + --n-ceil ${alignment_options.function_type},${alignment_options.constant_term},${alignment_options.coefficient} + ${alignment_options.skip_forward} ${alignment_options.skip_reverse} + #end if + #if str($spliced_options.spliced_options_selector) == "advanced": + --pen-cansplice ${spliced_options.canonical_penalty} --pen-noncansplice ${spliced_options.noncanonical_penalty} + --pen-canintronlen ${spliced_options.function_type},${spliced_options.constant_term},${spliced_options.coefficient} + --pen-noncanintronlen ${spliced_options.nc_function_type},${spliced_options.nc_constant_term},${spliced_options.nc_coefficient} + #if str($spliced_options.known_splice_gtf) != 'None': + --known-splicesite-infile splice_sites.txt + #end if + ${spliced_options.no_spliced_alignment} + --min-intronlen ${spliced_options.min_intron} + --max-intronlen ${spliced_options.max_intron} + ${spliced_options.tma} + @strandedness_parameters@ + #end if + #if str($paired_options.paired_options_selector) == "advanced": + --minins ${paired_options.minins} --maxins ${paired_options.maxins} ${paired_options.no_mixed} ${paired_options.no_discordant} + ${paired_options.dovetail} ${paired_options.contain} ${paired_options.overlap} + #end if + | samtools view -bS - | samtools sort - -o hsbam > "${output_alignments}" + ]]> + </command> + <inputs> + <conditional name="input_format"> + <param label="Input data format" name="input_format_selector" type="select"> + <option selected="selected" value="fastq">FASTQ</option> + <option value="fasta">FASTA</option> + </param> + <when value="fasta"> + <expand ftype="fasta" macro="paired_input_conditional" /> + </when> + <when value="fastq"> + <expand ftype="fastq" macro="paired_input_conditional" /> + </when> + </conditional> + <conditional name="reference_genome"> + <param help="Built-in references were created using default options" label="Source for the reference genome to align against" name="reference_genome_source" type="select"> + <option selected="True" value="indexed">Use a built-in genome</option> + <option value="history">Use a genome from history</option> + </param> + <when value="indexed"> + <param help="If your genome of interest is not listed, contact the Galaxy team" label="Select a reference genome" name="index" type="select"> + <options from_data_table="hisat2_indexes"> + <filter column="2" type="sort_by" /> + <validator message="No genomes are available for the selected input dataset" type="no_options" /> + </options> + </param> + </when> + <when value="history"> + <param format="fasta" label="Select the reference genome" metadata_name="dbkey" name="history_item" type="data" /> + </when> + </conditional> + <param argument="-k" default="5" help="Search for at most K distinct, primary alignments for each read. Primary alignments mean alignments whose alignment score is equal or higher than any other alignments. The search terminates when it can't find more distinct valid alignments, or when it finds K, whichever happens first." label="Primary alignments" name="max_primary" optional="True" type="integer" value="5" /> + <conditional name="alignment_options"> + <param label="Alignment options" name="alignment_options_selector" type="select"> + <option value="defaults">Use default values</option> + <option value="advanced">Specify alignment parameters</option> + </param> + <when value="defaults" /> + <when value="advanced"> + <expand macro="function" helptext="Sets a function governing the maximum number of ambiguous characters" /> + <param argument="--ignore-quals" falsevalue="" help="When calculating a mismatch penalty, always consider the quality value at the mismatched position to be the highest possible, regardless of the actual value. I.e. input is treated as though all quality values are high. This is also the default behavior when the input doesn't specify quality values." label="Ignore quality values" name="ignore_quals" truevalue="--ignore-quals" type="boolean" /> + <param argument="--nofw" falsevalue="" help="If --nofw is specified, hisat will not attempt to align unpaired reads to the forward (Watson) reference strand. In paired-end mode, --nofw and --norc pertain to the fragments; i.e. specifying --nofw causes hisat to explore only those paired-end configurations corresponding to fragments from the reverse-complement (Crick) strand." label="Skip forward strand of reference" name="skip_forward" truevalue="--nofw" type="boolean" /> + <param argument="--norc" falsevalue="" help="If --norc is specified, hisat will not attempt to align unpaired reads against the reverse-complement (Crick) reference strand. In paired-end mode, --nofw and --norc pertain to the fragments; i.e. specifying --nofw causes hisat to explore only those paired-end configurations corresponding to fragments from the reverse-complement (Crick) strand." label="Skip reference strand of reference" name="skip_reverse" truevalue="--norc" type="boolean" /> + </when> + </conditional> + <conditional name="input_options"> + <param label="Input options" name="input_options_selector" type="select"> + <option value="defaults">Use default values</option> + <option value="advanced">Specify input parameters</option> + </param> + <when value="defaults" /> + <when value="advanced"> + <param argument="-s" default="0" min="0" label="Skip the first N reads or pairs in the input" name="skip" type="integer" value="0" /> + <param argument="-u" default="0" min="0" help="Align the first N reads or read pairs from the input (after the first N reads or pairs have been skipped), then stop." label="Stop after aligning N reads" name="stop_after" type="integer" value="0" /> + <param argument="-5" default="0" min="0" help="Trim N bases from 5' (left) end of each read before alignment" label="Trim 5' end" name="trim_five" type="integer" value="0" /> + <param argument="-3" default="0" min="0" help="Trim N bases from 3' (right) end of each read before alignment" label="Trim 3' end" name="trim_three" type="integer" value="0" /> + </when> + </conditional> + <conditional name="scoring_options"> + <param label="Scoring options" name="scoring_options_selector" type="select"> + <option value="defaults">Use default values</option> + <option value="advanced">Specify scoring parameters</option> + </param> + <when value="defaults" /> + <when value="advanced"> + <expand macro="function" helptext="Sets a function governing the minimum alignment score needed for an alignment to be considered "valid" (i.e. good enough to report)." /> + <param argument="--ma" default="2" help="In local mode N is added to the alignment score for each position where a read character aligns to a reference character and the characters match. Not used in end-to-end mode" label="Set match bonus" name="match_bonus" type="integer" value="2" /> + <param argument="--mp" default="6" help="Sets the maximum mismatch penalty. A number less than or equal to MX and greater than or equal to MN is subtracted from the alignment score for each position where a read character aligns to a reference character, the characters do not match, and neither is an N. If --ignore-quals is specified, the number subtracted quals MX. Otherwise, the number subtracted is MN + floor( (MX-MN)(MIN(Q, 40.0)/40.0) ) where Q is the Phred quality value." label="Maximum mismatch penalty" name="max_mismatch" type="integer" value="6" /> + <param argument="--mp" default="2" help="Sets the minimum mismatch penalty. A number less than or equal to MX and greater than or equal to MN is subtracted from the alignment score for each position where a read character aligns to a reference character, the characters do not match, and neither is an N. If --ignore-quals is specified, the number subtracted quals MX. Otherwise, the number subtracted is MN + floor( (MX-MN)(MIN(Q, 40.0)/40.0) ) where Q is the Phred quality value." label="Minimum mismatch penalty" name="min_mismatch" type="integer" value="2" /> + <param argument="--np" default="1" help="Sets penalty for positions where the read, reference, or both, contain an ambiguous character such as N" label="Ambiguous read penalty" name="ambiguous_penalty" type="integer" value="1" /> + <param argument="--sp" default="2" help="Sets the maximum (MX) penalty for soft-clipping per base. A number less than or equal to MX and greater than or equal to MN is subtracted from the alignment score for each position. The number subtracted is MN + floor( (MX-MN)(MIN(Q, 40.0)/40.0) ) where Q is the Phred quality value." label="Maximum soft-clipping penalty" name="soft_clip_penalty_max" type="integer" value="2" /> + <param argument="--sp" default="1" help="Sets the minimum (MN) penalty for soft-clipping per base. A number less than or equal to MX and greater than or equal to MN is subtracted from the alignment score for each position. The number subtracted is MN + floor( (MX-MN)(MIN(Q, 40.0)/40.0) ) where Q is the Phred quality value." label="Minimum soft-clipping penalty" name="soft_clip_penalty_min" type="integer" value="1" /> + <param argument="--rdg" default="5" help="A read gap of length N gets a penalty of [open_penalty] + N * [extend_penalty]" label="Read gap open penalty." name="read_open_penalty" type="integer" value="5" /> + <param argument="--rdg" default="3" help="A read gap of length N gets a penalty of [open_penalty] + N * [extend_penalty]" label="Read gap extend penalty." name="read_extend_penalty" type="integer" value="3" /> + <param argument="--rfg" default="5" help="A reference gap of length N gets a penalty of [open_penalty] + N * [extend_penalty]" label="Reference gap open penalty." name="ref_open_penalty" type="integer" value="5" /> + <param argument="--rfg" default="3" help="A reference gap of length N gets a penalty of [open_penalty] + N * [extend_penalty]" label="Reference gap extend penalty." name="ref_extend_penalty" type="integer" value="3" /> + </when> + </conditional> + <conditional name="spliced_options"> + <param label="Spliced alignment parameters" name="spliced_options_selector" type="select"> + <option value="defaults">Use default values</option> + <option value="advanced">Specify spliced alignment parameters</option> + </param> + <when value="defaults" /> + <when value="advanced"> + <param label="Penalty for canonical splice sites" name="canonical_penalty" type="integer" value="0" /> + <param label="Penalty for non-canonical splice sites" name="noncanonical_penalty" type="integer" value="3" /> + <param display="radio" label="Penalty for long introns with canonical splice sites" name="function_type" type="select"> + <option value="C">Constant</option> + <option value="L">Linear [f(x) = y + z * x]</option> + <option value="S">Square root [f(x) = y + z * x²]</option> + <option value="G">Natural logarithm [f(x) = y + z * log(x)]</option> + </param> + <param help="Constant term for long canonical introns" label="Constant term (y)" name="constant_term" type="integer" value="0" /> + <param help="Coefficient for long canonical introns" label="Coefficient (z)" name="coefficient" type="integer" value="0" /> + <param display="radio" label="Penalty for long introns with noncanonical splice sites." name="nc_function_type" type="select"> + <option value="C">Constant</option> + <option value="L">Linear [f(x) = y + z * x]</option> + <option value="S">Square root [f(x) = y + z * x²]</option> + <option selected="selected" value="G">Natural logarithm [f(x) = y + z * log(x)]</option> + </param> + <param help="Constant term for long non-canonical introns" label="Constant term (y)" name="nc_constant_term" type="integer" value="-8" /> + <param help="Coefficient for long non-canonical introns" label="Coefficient (z)" name="nc_coefficient" type="integer" value="1" /> + <param label="Minimum intron length" name="min_intron" type="integer" value="20" /> + <param label="Maximum intron length" name="max_intron" type="integer" value="500000" /> + <param argument="--rna-strandness" name="rna_strandness" type="select" label="Specify strand-specific information" + help="'F' means a read corresponds to a transcript. 'R' means a read corresponds to the reverse complemented counterpart of a transcript."> + <option value="">FR Unstranded</option> + <option value="R">First Strand (R/RF)</option> + <option value="F">Second Strand (F/FR)</option> + </param> + <param argument="--no-spliced-alignment" name="ignore_quals" type="boolean" truevalue="--no-spliced-alignment" falsevalue="" label="Disable spliced alignment" /> + <param format="gtf" label="GTF file with known splice sites" name="known_splice_gtf" optional="True" type="data" /> + <param display="radio" label="Transcriptome assembly reporting" name="tma" type="select"> + <option value="">Use default reporting.</option> + <option value="--tmo">Report only those alignments within known transcripts.</option> + <option value="--dta">Report alignments tailored for transcript assemblers including StringTie.</option> + <option value="--dta-cufflinks">Report alignments tailored specifically for Cufflinks.</option> + </param> + </when> + </conditional> + <conditional name="paired_options"> + <param label="Paired alignment parameters" name="paired_options_selector" type="select"> + <option value="defaults">Use default values</option> + <option value="advanced">Specify paired alignment parameters</option> + </param> + <when value="defaults" /> + <when value="advanced"> + <param argument="--minins" help="The minimum fragment length for valid paired-end alignments. 0 sets no minimum." label="Minimum fragment length" name="minins" type="integer" value="0" /> + <param argument="--maxins" help="The maximum fragment length for valid paired-end alignments" label="Maximum fragment length" name="maxins" type="integer" value="500" /> + <param argument="--no-mixed" falsevalue="" help="By default, when hisat2 cannot find a concordant or discordant alignment for a pair, it then tries to find alignments for the individual mates" label="Disable finding alignments for individual mates." name="no_mixed" truevalue="--no-mixed" type="boolean" /> + <param argument="--no-discordant" falsevalue="" help="By default, hisat2 looks for discordant alignments if it cannot find any concordant alignments. A discordant alignment is an alignment where both mates align uniquely, but that does not satisfy the paired-end constraints" label="Disable looking for discordant alignments." name="no_discordant" truevalue="--no-discordant" type="boolean" /> + <param argument="--dovetail" falsevalue="" help="If the mates "dovetail", that is if one mate alignment extends past the beginning of the other such that the wrong mate begins upstream, consider that to be concordant." label="Mates not dovetail" name="dovetail" truevalue="--dovetail" type="boolean" /> + <param argument="--no-contain" falsevalue="" help="If one mate alignment contains the other, consider that to be non-concordant." label="Mates cannot contain others" name="contain" truevalue="--no-contain" type="boolean" /> + <param argument="--no-overlap" falsevalue="" help="If one mate alignment overlaps the other at all, consider that to be non-concordant." label="Mates cannot overlap" name="overlap" truevalue="--no-overlap" type="boolean" /> + </when> + </conditional> + </inputs> + <outputs> + <data format="bam" name="output_alignments" /> + </outputs> + <tests> + <test> + <param name="input_format_selector" value="fastq" /> + <param name="paired_selector" value="paired" /> + <param name="reference_genome_source" value="history" /> + <param ftype="fasta" name="history_item" value="phiX.fa" /> + <param ftype="fastqsanger" name="reads_f" value="hisat_input_1_forward.fastq" /> + <param ftype="fastqsanger" name="reads_r" value="hisat_input_1_reverse.fastq" /> + <output file="hisat_output_1.bam" ftype="bam" name="output_alignments" /> + </test> + <test> + <param name="input_format_selector" value="fastq" /> + <param name="paired_selector" value="paired" /> + <param name="reference_genome_source" value="history" /> + <param ftype="fasta" name="history_item" value="phiX.fa" /> + <param name="input_options_selector" value="advanced" /> + <param name="trim_three" value="15" /> + <param name="trim_five" value="15" /> + <param ftype="fastqsanger" name="reads_f" value="hisat_input_2_forward.fastq" /> + <param ftype="fastqsanger" name="reads_r" value="hisat_input_2_reverse.fastq" /> + <output file="hisat_output_2.bam" ftype="bam" name="output_alignments" /> + </test> + <test> + <param name="input_format_selector" value="fastq" /> + <param name="paired_selector" value="paired" /> + <param name="reference_genome_source" value="history" /> + <param name="history_item" value="phiX.fa" ftype="fasta" /> + <param name="input_options_selector" value="advanced" /> + <param name="trim_three" value="15" /> + <param name="trim_five" value="15" /> + <param name="reads_f" ftype="fastqsanger" value="hisat_input_2_forward.fastq" /> + <param name="reads_r" ftype="fastqsanger" value="hisat_input_2_reverse.fastq" /> + <param name="paired_end_options_selector" value="advanced" /> + <param name="no_mixed" value="True" /> + <param name="no_discordant" value="True" /> + <output name="output_alignments" ftype="bam" file="hisat_output_3.bam" /> + </test> + </tests> + <help> + <![CDATA[ +Introduction +============ + +What is HISAT? +-------------- + +`HISAT <http://ccb.jhu.edu/software/hisat>`__ is a fast and sensitive +spliced alignment program. As part of HISAT, we have developed a new +indexing scheme based on the Burrows-Wheeler transform +(`BWT <http://en.wikipedia.org/wiki/Burrows-Wheeler_transform>`__) and +the `FM index <http://en.wikipedia.org/wiki/FM-index>`__, called +hierarchical indexing, that employs two types of indexes: (1) one global +FM index representing the whole genome, and (2) many separate local FM +indexes for small regions collectively covering the genome. Our +hierarchical index for the human genome (about 3 billion bp) includes +~48,000 local FM indexes, each representing a genomic region of +~64,000bp. As the basis for non-gapped alignment, the FM index is +extremely fast with a low memory footprint, as demonstrated by +`Bowtie <http://bowtie-bio.sf.net>`__. In addition, HISAT provides +several alignment strategies specifically designed for mapping different +types of RNA-seq reads. All these together, HISAT enables extremely fast +and sensitive alignment of reads, in particular those spanning two exons +or more. As a result, HISAT is much faster >50 times than +`TopHat2 <http://ccb.jhu.edu/software/tophat>`__ with better alignment +quality. Although it uses a large number of indexes, the memory +requirement of HISAT is still modest, approximately 4.3 GB for human. +HISAT uses the `Bowtie2 <http://bowtie-bio.sf.net/bowtie2>`__ +implementation to handle most of the operations on the FM index. In +addition to spliced alignment, HISAT handles reads involving indels and +supports a paired-end alignment mode. Multiple processors can be used +simultaneously to achieve greater alignment speed. HISAT outputs +alignments in `SAM <http://samtools.sourceforge.net/SAM1.pdf>`__ format, +enabling interoperation with a large number of other tools (e.g. +`SAMtools <http://samtools.sourceforge.net>`__, +`GATK <http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit>`__) +that use SAM. HISAT is distributed under the `GPLv3 +license <http://www.gnu.org/licenses/gpl-3.0.html>`__, and it runs on +the command line under Linux, Mac OS X and Windows. + +Running HISAT +============= + +Reporting +--------- + +The reporting mode governs how many alignments HISAT looks for, and how +to report them. + +In general, when we say that a read has an alignment, we mean that it +has a `valid +alignment <#valid-alignments-meet-or-exceed-the-minimum-score-threshold>`__. +When we say that a read has multiple alignments, we mean that it has +multiple alignments that are valid and distinct from one another. + +Distinct alignments map a read to different places +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +Two alignments for the same individual read are "distinct" if they map +the same read to different places. Specifically, we say that two +alignments are distinct if there are no alignment positions where a +particular read offset is aligned opposite a particular reference offset +in both alignments with the same orientation. E.g. if the first +alignment is in the forward orientation and aligns the read character at +read offset 10 to the reference character at chromosome 3, offset +3,445,245, and the second alignment is also in the forward orientation +and also aligns the read character at read offset 10 to the reference +character at chromosome 3, offset 3,445,245, they are not distinct +alignments. + +Two alignments for the same pair are distinct if either the mate 1s in +the two paired-end alignments are distinct or the mate 2s in the two +alignments are distinct or both. + +Default mode: search for one or more alignments, report each +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +HISAT searches for up to N distinct, primary alignments for each read, +where N equals the integer specified with the ``-k`` parameter. Primary +alignments mean alignments whose alignment score is equal or higher than +any other alignments. It is possible that multiple distinct alignments +whave the same score. That is, if ``-k 2`` is specified, HISAT will +search for at most 2 distinct alignments. The alignment score for a +paired-end alignment equals the sum of the alignment scores of the +individual mates. Each reported read or pair alignment beyond the first +has the SAM 'secondary' bit (which equals 256) set in its FLAGS field. +See the `SAM specification <http://samtools.sourceforge.net/SAM1.pdf>`__ +for details. + +HISAT does not "find" alignments in any specific order, so for reads +that have more than N distinct, valid alignments, HISAT does not +gaurantee that the N alignments reported are the best possible in terms +of alignment score. Still, this mode can be effective and fast in +situations where the user cares more about whether a read aligns (or +aligns a certain number of times) than where exactly it originated. + +Alignment summmary +------------------ + +When HISAT finishes running, it prints messages summarizing what +happened. These messages are printed to the "standard error" ("stderr") +filehandle. For datasets consisting of unpaired reads, the summary might +look like this: + +:: + + 20000 reads; of these: + 20000 (100.00%) were unpaired; of these: + 1247 (6.24%) aligned 0 times + 18739 (93.69%) aligned exactly 1 time + 14 (0.07%) aligned >1 times + 93.77% overall alignment rate + +For datasets consisting of pairs, the summary might look like this: + +:: + + 10000 reads; of these: + 10000 (100.00%) were paired; of these: + 650 (6.50%) aligned concordantly 0 times + 8823 (88.23%) aligned concordantly exactly 1 time + 527 (5.27%) aligned concordantly >1 times + ---- + 650 pairs aligned concordantly 0 times; of these: + 34 (5.23%) aligned discordantly 1 time + ---- + 616 pairs aligned 0 times concordantly or discordantly; of these: + 1232 mates make up the pairs; of these: + 660 (53.57%) aligned 0 times + 571 (46.35%) aligned exactly 1 time + 1 (0.08%) aligned >1 times + 96.70% overall alignment rate + +The indentation indicates how subtotals relate to totals. + ]]> + </help> + <citations> + <citation type="doi">10.1038/nmeth.3317</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/hisat2_macros.xml Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,66 @@ +<?xml version="1.0"?> +<macros> + <xml name="function" tokens="helptext"> + <param display="radio" help="@HELPTEXT@" label="Function type" name="function_type" type="select"> + <option value="C">Constant</option> + <option value="L">Linear [f(x) = y + z * x]</option> + <option value="S">Square root [f(x) = y + z * x²]</option> + <option value="G">Natural logarithm [f(x) = y + z * log(x)]</option> + </param> + <param help="@HELPTEXT@" label="Constant term (y)" name="constant_term" type="integer" value="0" /> + <param help="@HELPTEXT@" label="Coefficient (z)" name="coefficient" type="integer" value="0" /> + </xml> + <xml name="single_paired_selector"> + <param label="Single end or paired reads?" name="paired_selector" type="select"> + <option value="paired_collection">Collection of paired reads</option> + <option value="paired">Individual paired reads</option> + <option value="single">Individual unpaired reads</option> + </param> + </xml> + <xml name="paired_input_conditional" tokens="ftype"> + <conditional name="paired"> + <expand macro="single_paired_selector" /> + <when value="paired_collection"> + <param collection_type="paired" format="@FTYPE@" label="Paired reads" name="reads" type="data_collection" /> + <expand macro="paired_end_conditional" /> + </when> + <when value="paired"> + <param format="@FTYPE@" label="Forward reads" multiple="true" name="reads_f" type="data" /> + <param format="@FTYPE@" label="Reverse reads" multiple="true" name="reads_r" type="data" /> + <expand macro="paired_end_conditional" /> + </when> + <when value="single"> + <param format="@FTYPE@" label="Reads" multiple="true" name="reads" type="data" /> + </when> + </conditional> + </xml> + <xml name="paired_end_conditional"> + <conditional name="paired_end_options"> + <param label="Paired-end options" name="paired_end_options_selector" type="select"> + <option value="defaults">Use default values</option> + <option value="advanced">Specify paired-end parameters</option> + </param> + <when value="defaults" /> + <when value="advanced"> + <param name="no_mixed" label="Disable alignments of individual mates" type="boolean" truevalue="--no-mixed" falsevalue="" + help="By default, when hisat cannot find a concordant or discordant alignment for a pair, it then tries to find alignments for the individual mates. This option disables that behavior. (--no-mixed)" /> + <param name="no_discordant" label="Disable discordant alignments" type="boolean" truevalue="--no-discordant" falsevalue="" + help="By default, hisat looks for discordant alignments if it cannot find any concordant alignments. A discordant alignment is an alignment where both mates align uniquely, but that does not satisfy the paired-end constraints (--fr/--rf/--ff, -I, -X). This option disables that behavior. (--no-discordant)" /> + <param name="skip_reverse" label="Skip reference strand of reference" type="boolean" truevalue="--norc" falsevalue="" help="(--norc) If --norc is specified, hisat will not attempt to align unpaired reads against the reverse-complement (Crick) reference strand. In paired-end mode, --nofw and --norc pertain to the fragments; i.e. specifying --nofw causes hisat to explore only those paired-end configurations corresponding to fragments from the reverse-complement (Crick) strand." /> + </when> + </conditional> + </xml> + <token name="@paired_end_options@"> + #if str($input_format.paired.paired_end_options.paired_end_options_selector) == 'advanced': + ${input_format.paired.paired_end_options.no_mixed} + ${input_format.paired.paired_end_options.no_discordant} + #end if + </token> + <token name="strandedness_parameters"> + #if str($spliced_options.spliced_options_selector) == "advanced": + #if str($spliced_options.rna_strandness).strip() != '': + --rna-strandness $spliced_options.rna_strandness + #end if + #end if + </token> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hisat_input_1_forward.fastq Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,40 @@ +@phiX174_1980_2501_0:1:0_3:0:0_0/1 +TTAGGTGTGTGTAAAACAGGTGCCGAAGAAGCTGGATTAACAGAATTGAGAACCAGCTTATCAGAAAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1542_1965_0:0:0_0:0:0_1/1 +CTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2950_3377_0:0:0_2:0:0_2/1 +CTCAAATCCGGCGTCAACCATACCAGCATAGGAAGCATCAGCACCAGCACGCTCCCAAGCATTAATCTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2259_2739_1:0:0_1:0:0_3/1 +CTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1141_1609_1:0:0_1:0:0_4/1 +TGGCGCTCTCCGTCTTTCTCCATTTCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_185_708_0:0:0_1:0:0_5/1 +CCTTTCGCCATCAACTAACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1363_1914_3:0:0_0:0:0_6/1 +GCGTTAAGGTACTGAATCTCTTTAGTCGCAGTAGGCGGAAAACGAACAAGCGCAAGAGTAAACATAGTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3199_3732_0:0:0_1:0:0_7/1 +CTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_36_572_1:0:0_0:0:0_8/1 +ACCATAAACGCAAGCCTCAACGCAGCGACGAGCACGAGAGCGGTCAGTAGCAATCCAAACTTTGTTACTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2128_2577_0:0:0_4:0:0_9/1 +TTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hisat_input_1_reverse.fastq Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,40 @@ +@phiX174_1980_2501_0:1:0_3:0:0_0/2 +GTGAAATTTCTAGGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1542_1965_0:0:0_0:0:0_1/2 +CCATACAAAACAGGGTCGCCAGCAATATCGGTATAAGTCAAAGCACCTTTAGCGTTAAGGTACTGAATCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2950_3377_0:0:0_2:0:0_2/2 +GCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2259_2739_1:0:0_1:0:0_3/2 +GCGACCATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGTAGTCGGAACCGACGAAGACTCAAAGCGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1141_1609_1:0:0_1:0:0_4/2 +CAAATTAGCATAAGCAGCTTGCAGACCCATAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCTAGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_185_708_0:0:0_1:0:0_5/2 +TGTTTTCCGTAAATTCAGCGCCTTCCATGATGCGACAGGCCGTTTGAATGTTGACGGGATGAACATAATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1363_1914_3:0:0_0:0:0_6/2 +TAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTCAAGCGCCGAGGATGCGTGACCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3199_3732_0:0:0_1:0:0_7/2 +TCTGCGTTTGCTGATGAACTAAGTCAACCTCAGCACTAACCTTGCGAGTCATTTCATTGATTTGGTCATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_36_572_1:0:0_0:0:0_8/2 +TTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGTAATTACTACTGCTTGTTTACGAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2128_2577_0:0:0_4:0:0_9/2 +CTGAATGGAATTAAGAAAACCACCAATACCAGCATTAACCTTCAAACTATCAAAATATAACGTTGACGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hisat_input_2_forward.fastq Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,2000 @@ +@phiX174_4023_4544_0:0:0_0:0:0_0/1 +TTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTCTACTCTTTCTCAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_927_1458_2:0:0_2:0:0_1/1 +TTAAGCTCATTAGGGTTAGCCTCGGTACGGTCAGGCATCCACGGCTCATTAAAATAGTTGTTATAGATAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2195_2674_0:0:0_4:0:0_2/1 +AGCGAACCAAACAGGCAAAAACTTTAGGGTCGGCATCAAAAGCAATATCAGCACCCACAGAACCAACCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4438_4887_3:0:0_0:0:0_3/1 +ATTACCCCAACCAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCACCACTATGAAATCGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4418_4896_1:0:0_1:0:0_4/1 +GGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGAGTTCAAGATTGCTGGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1459_1934_0:0:0_1:0:0_5/1 +TCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2580_3121_1:0:0_1:0:0_6/1 +GGATACATCTGTCAACGCCGCTAATCAGGTTGTTACTGTTGGTGCTGATATTGCTTTTGATGCCGACCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_268_822_1:0:0_2:0:0_7/1 +TTTGACGCACGTTTTCTTCTGCGTCAGTCAGAACGTCAGTGTTTCCTGGGCGTACACGCAAGGTAAACGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4373_4951_0:0:0_2:0:0_8/1 +GGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4817_5237_1:0:0_1:0:0_9/1 +GTTGAACGGCGTCGCGTCGTAACCCAGCTTGGTAAGTTGGATTAATCACTCCGTGGACAGATTTGTCATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_498_1078_5:0:0_0:0:0_a/1 +CTGAGGAGTAACAAAGTTTGGATTGCTACTGACCGCTCACGTGCTCGTGGCAGCGTTGAGTCTTGCGTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4746_5200_3:0:0_0:0:0_b/1 +TGGATTAAGCACTCCGTGGACAGATTTGTCATTGTGAGCATTTTCATCCCGAAGTTGCGGCTCATTCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4746_5155_3:0:0_0:0:0_c/1 +ATCCCGAAGTTGCGGCTCATTCTGATTCTGAACAGCTTCTTGGGAAGTAGCGACAGCTTGGTTTTTAGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2025_2501_0:0:0_0:1:0_d/1 +AGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2574_3097_1:0:0_2:0:0_e/1 +ATGGCAGATTTAATACCAGCATCCCCCATGCCTACAGTATTGTTCTCGGTAGCAAGCACATCACCTTGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1432_1904_0:0:0_0:0:0_f/1 +TACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_79_485_2:0:0_2:0:0_10/1 +ATCTTCGTTTAAATCCAAAACGGCAGAAGCCTGAATGAGCTTAATAGAGGCCACAGCGGTCTGGAAACGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_696_1131_1:0:0_0:0:0_11/1 +ATCTCGAAGGAGTCGCCAGCGATAACCGGAGTAGTTGAAATGGTAATAAGACGACCAATCTGACCAGCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1085_1572_3:0:0_1:0:0_12/1 +ATTACCATTTCACCTACTCCGGTTATCGCTGGCGCCTCCTTCGATATGGACGCCGTTGGCGCTCTCCGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2384_2869_1:0:0_2:0:0_13/1 +GGAGTTTAATCATTTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_794_1377_1:1:0_1:0:0_14/1 +TGAAACAACTGCTTAGGGATTTTATTGGTATCAGGGTTAATCGTGCCAAGAAAAGCGGCATGGTCAATAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1015_1593_1:0:0_2:0:0_15/1 +AACTGGCTCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_182_623_0:0:0_1:0:0_16/1 +AATAAACTCAACAGGAGCAGGAAAGCGAGGGTATCCCACAAAGTCCAGGGTACCATAAACGCAAGCCTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_996_1455_1:0:0_1:0:0_17/1 +AGCTCATTAGGGTTAGCCTCGGTACGGTCAGGCATCCACGGCGCTTTAAAAAAGTTGTTATAGATATTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_277_813_0:0:0_1:0:0_18/1 +CGTTTTCTTCTGCGTCAGTAAGAACGTCAGTGTATCCTGCGCGTACACGCAAGGTAAACGCGAACAATTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1822_2393_2:0:0_0:0:0_19/1 +ATTAAACTCCTAAGCAGAAAACCTACCGCGCTTCGCTTGGTCAACCCCTCAGCGGCAAAAATTAAAATTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1839_2382_1:0:0_1:0:0_1a/1 +AAGCAGAAACCCTACCGCGCTTCGCTTGGTCAACCCCTCAGCGGCAAAAATTAAAATTTTTACCGCTTCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1140_1596_3:0:0_3:0:0_1b/1 +GCAGGTTGCAGACCCATAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCTCAGACTGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1449_1972_1:0:0_1:0:0_1c/1 +CAAGTTGCCATACAAAACAGGGTCGCCAGCAATATCGGTATAAGTCAAAGCACCTTTAGCGTTAAGGTAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_99_645_0:0:0_2:0:0_1d/1 +CATAATAAGCAATGACGGCAGCAATACACTCCACAGGAGCAGGAAAGCGAGGGTATCCCACAAAGTCCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_17_543_2:0:0_2:0:0_1e/1 +GAGCACGAGCGCGGACAGTAGCAATCCAAACTTTGTTACTCGTCAGAAAATCGAAATCATCTTCGGTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4185_4721_0:1:0_1:0:0_1f/1 +AATGGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATTAGTTTGTATCTGTTACTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3543_4018_1:0:0_2:0:0_20/1 +GAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAAACTTTCCAAGCAACAGCAGGTTTCCGAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1664_2152_4:0:0_2:0:0_21/1 +TCATTTGGAGGTAAAACCTCTTAAGACGCTGACAACCGTCCTTAACTTGTCATGCGCACTCATCTCTGGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3435_3911_1:0:0_0:0:0_22/1 +CAACATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2738_3250_0:0:0_3:0:0_23/1 +CCACCAAGTCCAACCAAATCACGCAACTTATCAGACACTGCAGAAGTGCCAGCCTGCAACGTACCTTCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_772_1314_2:0:0_2:0:0_24/1 +GCGCAGGAAACACTGACGTTCTTACTGACGCAGCAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4676_5213_0:0:0_1:0:0_25/1 +TGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3271_3795_1:0:0_2:0:0_26/1 +GAAAGGATACTCGTTATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3137_3611_0:0:0_1:0:0_27/1 +CTCGGAAACCTGCTGTTGCTTGGAAAGATTGGTGTTTTCCATAATAGACGCCACGCGAGCAGTAGACTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3971_4458_1:0:0_0:0:0_28/1 +TACCTTTCTTTTTGGGGTAATTATACTCATCGCGAATATCCTTAAGAGGGCGTTCAGCAGCCAGCTTGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2307_2855_1:0:0_1:0:0_29/1 +TCACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_568_1192_1:0:0_0:0:0_2a/1 +AGTAGAGTCAATAGCAAGGCCACGACGCAATGGAGAAAGACGGAGAGCGCCAACGGCGTCCATCTCGAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3607_4112_0:0:0_2:0:0_2b/1 +ATGGAAGCCAAGCATTGGGGATTGAGAAAGAGTAGAAATGCCACAAGCGTCAATAGCAGGTATAAGAGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2296_2767_1:0:0_0:0:0_2c/1 +CCTTGACGGTATAATAACCACCATCATGGCGACCATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1636_2263_0:0:0_1:0:0_2d/1 +CATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3319_3790_0:0:0_2:0:0_2e/1 +ACGACAATAGAAATATCCTTTGCAGTAGCGCCAATAAGAGAAGAGCCATACCGCTGATTCTGCGTTTGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1043_1520_4:0:0_1:0:0_2f/1 +GCGGAGCAGTCCAAATGTTTTTGAGATGGCAGCAACGGAAACCATAACGAGCATCATCTTGATTAATCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4595_5067_1:0:0_1:0:0_30/1 +GGCTGACGACCGATTAGAGGCGTTTTCTGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_787_1273_0:1:0_3:0:0_31/1 +ATTAAGACCATCCTTCATGAACTTAATCCACAGTTCACCATAAACGTGACGATGAGGTACATAAAAAGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2530_2954_5:0:0_2:0:0_32/1 +AGTATGACGGTTAATGCTGGTAATGGAGGTTTTCTTCATATCATTCAGATGGATACATCTGTCAACTCCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4131_4623_2:0:0_2:0:0_33/1 +CATAAAACGCGTCTAATCGGTCGTGAGCCAACGTGAGAGTGTCAAAAACGATAAACCAACCATCAGCATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1097_1538_1:0:0_1:0:0_34/1 +GCTCAGTCTCAGGAGGAAGCGGAGCAGTCCAAATGTTTTTGAGATGGCAGCAACGGAAACCATAACTAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1220_1777_2:0:0_0:0:0_35/1 +GATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCGCGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1116_1546_1:0:0_3:0:0_36/1 +GGGAGAAAGCTCAGTCTCATTAGGAAGCGGAGCAGTCCAAATGTTTTTGAGATGGCAGCAACGGAAACCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1266_1732_2:0:0_1:0:0_37/1 +GTGTAAATGCCACTCCTCTCCCGCCTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2757_3237_1:0:0_1:0:0_38/1 +TACCTTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAATGTTTATGTTGGTTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3501_3920_1:0:0_0:0:0_39/1 +CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGTAGTCTACTGCTCGCGTTGCGTCTATTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_30_492_1:0:0_2:0:0_3a/1 +CGAAATCAACTTCGGTTAAATCCACAACGGCAGAAGCCTGAATGAGCTTAATAGAGGCCAAAGCGGTCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2753_3287_0:0:0_1:0:0_3b/1 +ATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAATGTTTATGTTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3381_3868_2:0:0_1:0:0_3c/1 +CAGAAATTTTTCCAAGTATCGGCAACAGCTTTATCAATACCATGAAAAATATCAACCACACCAGAAGCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3151_3605_1:0:0_2:0:0_3d/1 +GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGTCACTTCTGCCGTTTCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1639_2047_1:0:0_1:0:0_3e/1 +GCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCGTTTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_925_1373_0:0:0_1:0:0_3f/1 +ACAAATGCTTAGGGATTTTATTGGTATGAGGGTTAATCGTGCCAAGAAAAGCGGCATGGTCAATATAACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3106_3747_2:0:0_0:0:0_40/1 +AGCCATACCGCTGATTCTGCGTTTGCTGATGAACTAAGTCAACCTCAGCACTAACCTTGCGAGTCATTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2717_3213_1:0:0_0:0:0_41/1 +ATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACGGTCAAGGACTGTGTGACTATTGACGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4734_5225_0:0:0_2:0:0_42/1 +GTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_435_938_2:0:0_2:0:0_43/1 +AAAGACGAGCGCCTTTACGCTTGCCATTAGTACCTCGCAACGGCTGCGGACTACCAGGGCGAGCGCCAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2230_2750_1:0:0_1:0:0_44/1 +CCAGCATCATGGCGACCATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGTAGTCGGAACCGAAGAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2857_3359_2:0:0_4:0:0_45/1 +CATACCAGGAGAGGACGCATCAGCACCAGCACGCTCCCAAGCATTAAGCTCAGGAAATGCATGAGCAAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3261_3790_1:0:0_1:0:0_46/1 +ACGACATTAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAGAGCCATACCGCTGATACTGCGTTTGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3627_4066_1:0:0_2:0:0_47/1 +GCGTCAATAGCAGGTTTAAGATCCTCGATACGCTCAAAGTCAAAATAATCAGCGTGACATTCAGAAGGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2501_2976_3:0:0_1:0:0_48/1 +CACCAGCAAGAGCAGAAGCAATACCGCCCGCAATAGCACCAAACATAAATCACCTCACTTAAGTGGCTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1065_1576_3:0:0_0:0:0_49/1 +GTCAATAGATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTCCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1080_1550_0:0:0_0:0:0_4a/1 +GTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1822_2280_3:0:0_0:0:0_4b/1 +GCGTTTCTTTGTTCCTGAGCATGGCACTATGATTACTCTTGCGCTTGTTCGTTATCCGCGTACTGCGACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1170_1634_1:0:0_0:0:0_4c/1 +AGTAATCACGTTCTTGGTCAGTATGCAAATTAGCATAAGCAGCTTGCAGACCCATAATGTCAATAGATGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2237_2837_2:0:0_2:0:0_4d/1 +GTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTTATAAAAGATTGAGAGTGAGGTTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2745_3240_3:0:0_1:0:0_4e/1 +CAACCAAATCAAGCAACTTATCAGAAACTGCAGAAGTGCCAGCCTGCAACGTACCTTCAAGAAGTCCTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1141_1597_0:0:0_2:0:0_4f/1 +TGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4456_4963_0:0:0_1:0:0_50/1 +TTAGCATCAACAGGGCACAACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGAACTGCGATGGGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3482_4043_0:0:0_0:0:0_51/1 +CTCGATACGCTCAAAGTCAAAATAATCAGCGTGACATTCAGAAGGGTAATAAGAACGAACCATAAAAAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2303_2790_1:0:0_0:0:0_52/1 +AAGGACGTCAATAGTCACACAGTCCTTGACGGTATAATAACCACCATCATGGCGACCATTCAAAGGATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1662_2049_1:0:0_1:0:0_53/1 +CTTCATTTGGAGTTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4311_4753_2:0:0_2:0:0_54/1 +AATAACACTATAGACCACCGCCCCTAAGGGGACGAAAAATGGATTTTAGAGAACGAGAAGACGGTTACGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1415_2014_1:0:0_2:0:0_55/1 +ACCAGAACGGAAAACATCCTTCATAGAAATTTGACGCGGCGGCAAGTTTCCATACAAAACAGGGTCGCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4647_5144_1:0:0_2:0:0_56/1 +TATTTTCGTGATATTGGTCGTATGTTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2230_2730_1:0:0_1:0:0_57/1 +CAAAGGATAAACATCATAGGCAGTCGGGAGGGTAGTGGGAACCGAAGAAGACTCAAAGCGAACCAAACAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3424_3922_2:0:0_2:0:0_58/1 +TTGCCGAGATGCAAAATGCGACTCAAAAAGAGATTGCTGGCATTCAGTCTGCGACTTCACGCCAGAATAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1838_2329_0:0:0_1:0:0_59/1 +AAATTTTTACCGCTTCGGCGTTATAACCTCACACTCAATCTTTTATCACGAAGTCATGATTGAATCGGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1728_2221_1:0:0_1:0:0_5a/1 +TCTGGGCATCTGGCTATGATGTTGATGGAACAGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4544_5065_0:0:0_0:0:0_5b/1 +CCTAGACCTTTAGCAGCAAGGTCCATATCTGACTTTTTGTTAACGTATTTAGCCACATAGAAACCAACAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1104_1583_0:0:0_0:0:0_5c/1 +CCATAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3724_4250_1:0:0_1:1:0_5d/1 +AAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACAGCAAAGGATATTTCTAATGTCGTCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3060_3631_2:0:0_3:0:0_5e/1 +GTAAGCATTTGTCGGATCATCTCGGAAACCTGCTGTTGCTTGGAAAGATTGGTGTTTTCCATAATAGACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4390_4869_3:0:0_3:0:0_5f/1 +GCAAGCTGGCTGCTGACCGGGCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1103_1655_2:0:0_1:0:0_60/1 +CCGGTTATCGCTGTCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCGATTGCGTCGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4367_4818_0:0:0_2:0:0_61/1 +GAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3356_3831_1:0:0_0:0:0_62/1 +TACCATGAAAAATATCAACCACACCAGAAGCAGCATCAGTGACGACATTAGAAATATCCTTTGCAGTAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4839_5348_0:0:0_1:0:1_63/1 +CATAAATTGAGCAGCTTTGTCGTCACAGGTTGCGCCGCCAAAACGTCGGCTACAGTAACTTTTCCCAGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_460_981_0:0:0_3:0:0_64/1 +CTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2474_3007_1:0:0_0:0:0_65/1 +TGACCGCCTCCAAACAATTTAGACATGGCGCCACCAGCAAGAGCAGAAGCAATACCGCCAGCAATAGCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1318_1862_0:0:0_1:0:0_66/1 +TGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4777_5207_1:0:0_0:0:0_67/1 +CGGTGCATTTTATGCGGACACTTCCTACAGGAAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3446_3931_3:0:0_0:0:0_68/1 +GTCAATCCTGACGGTTATTTCCTAGACAAATTAGAGCCAATACCATCAGCTTTACCGTCTTTCCAGAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1556_2009_1:0:0_1:0:0_69/1 +ACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCCTACTGACCAAGAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4643_5097_0:0:0_1:0:0_6a/1 +TGGTTTTTAGTGAGTAGTTCCATTCTTTAGCTCCTAGACCTTTAGCAGCAAGGTCCATATCTGACTTTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3838_4331_1:0:0_0:0:0_6b/1 +GCGGTGGTCTATAGTGTTATTAATATCAAGTTGGGGGAGCACATTGTAGCATTGTGCCAATTCATCCATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2461_2906_2:0:0_2:0:0_6c/1 +AGCCAAATAATCTCTTTAATAACCTGATTCAGCGAAACCAATCCGCGGCATTTCGTAGCGGTAAAGTTAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2096_2616_0:0:0_0:0:0_6d/1 +CTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1033_1590_0:0:0_2:0:0_6e/1 +GCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3855_4385_1:0:0_0:0:0_6f/1 +TGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGACATAACCGTCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4631_5084_1:0:0_3:0:0_70/1 +CAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCAGCCGAGGGTCGCAAGGCTAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1557_2041_1:0:0_2:0:0_71/1 +CTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTTCTTATGCTAATTTGCATACTGACCAAGAACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_332_792_3:0:0_3:0:0_72/1 +GAACGTCAGTGTTTCCTGCGCGTACACGCAAGGTACACGCGAACAATTCAGCGTCTTTAACGGGACGCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4411_4951_2:0:0_2:0:0_73/1 +CTCTTAAGGATATTCGCGATGAGTATAATTAGCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAATATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1971_2492_1:0:0_4:0:0_74/1 +TGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCAGGTGATTCGTCTAAGAAGTTTAAGATTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_544_971_1:0:0_2:0:0_75/1 +GTCGCTGCGTTGAGGCTTGCGTTTATGGTAGGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2065_2660_3:0:0_1:0:0_76/1 +GCAAAAAATTTAGGGTCGGCATCAAAAGCAATATCAGCACCAACAGAAACACCCTGATTAGCGGCGTTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4843_5331_1:0:0_1:0:0_77/1 +TTGTCGTCACAGGTTGCGCCGCCAAAACGTCGGCAACAGTAACTTTTCCCAGCCTCAATCTCATCTCTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2685_3146_1:0:0_0:0:0_78/1 +TTCGGTTCCGACTACCCTCCCGACTTCCTATGATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_21_568_3:0:0_0:0:0_79/1 +TAAACGCAAGCCTCAACGCAGCGACGAGCACGAGAGCGGTCAGTAGCAATCCAAACTTTGTTACTCGTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3074_3602_0:0:0_1:0:0_7a/1 +TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1293_1770_0:0:0_3:0:0_7b/1 +TTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2090_2638_0:0:0_0:0:0_7c/1 +CACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4261_4732_0:0:0_2:0:0_7d/1 +CAAAAATACTGATAGCAGTCGGCGTGTGAATCATTAGCCTTGCGACCCTCTGCCGCAAGAACCATACGAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2873_3466_0:0:0_0:0:0_7e/1 +CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1064_1508_0:0:0_4:0:0_7f/1 +AACTGTATTTGAGATGGCAGCAACGGAAACCATAACGAGCATCATCTTGCTTAAGGTCATTAGGGTTAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2891_3381_1:0:0_1:0:0_80/1 +AAGAGATTATTTGTCTCCAGCCACTTCAGTGAGGTGATTTATGTTTGGTGCTATTGCTGGCGGTATTGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4488_4971_0:0:0_2:0:0_81/1 +GCTCACCTTTAGCATCAACAGGCCACAACCAACCAGAACGTGAAAAAGCGACCTGCGTGTAGCGAACAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2743_3227_0:0:0_0:0:0_82/1 +GATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3967_4438_0:0:0_1:0:0_83/1 +TTATACTCATCGCGAATATCCTTAAGAGGGCGTTCAGCAGCCAGCTTGCTGCAAAACTGCGTAACCGTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1870_2375_0:0:0_2:0:0_84/1 +TCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1341_1859_1:0:0_2:0:0_85/1 +GAGTAAACATAGTGCCATGCTCAGGAACAAAGAAACGCGGCACAGAATGTTTATCGGTCTGTAGAACACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_468_969_2:0:0_3:0:0_86/1 +TTGTATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGCCCGCTCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_619_1102_0:0:0_0:0:0_87/1 +TTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4468_5007_1:0:0_3:0:0_88/1 +AGAAACCAACAGCCATATAACTGGAAGCTTTAAGGGGCTCACCTTTAGCAACAACAGGCCACAACCAACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_354_848_1:0:0_3:0:0_89/1 +TTACATCACTCCTTCTGCACTTAATTTTTGACGGACGTTTTCTTCTGCGTCATTAAGAACGTCAGTGTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1973_2503_1:0:0_1:1:0_8a/1 +CTTTAGGTGTCTGTAAAACAGGTGCCGAAGAAGCTGGATTTACAGAAGTGAGAACCAGCTTATCAGAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1674_2081_2:0:0_1:0:0_8b/1 +GTAAAACCTCTTATGACGCTGACAACCTACCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_684_1239_1:0:0_0:0:0_8c/1 +GAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGGCGCTGAATTGTTCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4240_4711_1:0:0_1:0:0_8d/1 +GCGTGTGAATCATTAGCCTTGCGACCCTCGGCAGCAATAACCATACGACCAATATCACGAAAATAGTCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2991_3536_3:0:0_1:0:0_8e/1 +TTGATAAGCAAGCATCTCATTTTTTGCATATACCTGGTCTTTCGTATTCTGGCGTGAAGTCGCCGACTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3052_3562_0:0:0_1:0:0_8f/1 +GCAACGGGAGCAGTAGACTCCTTCTGTTGATAAGCAAGCATCTCATTTTGTGCATATACCTGGTCTTTCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3846_4285_4:0:0_2:1:0_90/1 +GCCGATACTTGGAAGAAATTCTGGAAAGACGGTAAAGCTGATGGTATTTTCTCTAATTTGTCTAGGAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2675_3179_1:0:0_0:0:0_91/1 +AAGTCCTTTACCAGCTTTAGCCATAGCACCAGAAACAAAACTAGGGGCGGCCTCATCAGGGTTAGGAACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2468_2921_1:0:0_1:0:0_92/1 +CACTTAAGTGGCTGGAGACAAATAATCTCTTTAATAACCTGATTCAGCGAAACCAAACCGCGGCATTTAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_462_964_1:0:0_1:0:0_93/1 +TTACAATTGTTGACCACCTACATACCAAAGACGAGCGCCTTTACGCTTGCCTTTAGTACCTCGCAACGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2392_2881_1:0:0_1:0:0_94/1 +ATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTACTGATAAGCTGGTTCTCACTTCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1015_1473_0:0:0_0:0:0_95/1 +CGAGCATCATCTTGATTAAGCTCATTAGGGTTAGCCTCGGTACGGTCAGGCATCCACGGCGCTTTAAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4874_5385_0:0:0_0:0:0_96/1 +GCAGGTTGGATACGCCAATCATTTTTATCGAAGCGCGCATAAATTTGAGCAGATTTGTCGTCACAGGTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3405_3927_1:0:0_1:0:0_97/1 +CTGGACAATCAGAAATAGATTGCCGAGATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2441_2902_2:1:0_1:0:0_98/1 +ATAAGCTGGTTCTCACTTCTGTAACTCCAGCTTCTTCTGCACCTGTTTTACAGACACCTAAAGCTACAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_750_1259_1:0:0_1:0:0_99/1 +TTCGCGTTTACCTTGCGTGTACGCGCAGGACACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2633_3161_2:0:0_3:0:0_9a/1 +AGCCCTAGCACCAGAAACAAAACTAGGGGCGGCCTCATCAGGGTTAGTAACATTAGAGCCTTGCATGGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3304_3817_0:0:0_1:0:0_9b/1 +TTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3934_4328_1:0:0_1:0:0_9c/1 +GTGGTCTATAGTGTTATTAATATCAAGTTGGGGGAGCACATTGTCGCATTGTGCCAATTCATCCATTAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_858_1332_1:0:0_4:0:0_9d/1 +GTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTCAAGGCAAGCGTAAAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2833_3368_1:0:0_1:0:0_9e/1 +TGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTAATTAAAGAGATTATTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1923_2395_1:0:0_0:0:0_9f/1 +TGATTAAACTCCTAAGCAGAAAACCTACCGCGCTTCGCTTGGTCAACCCCTCAGCGGCAAAAATTAAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1651_2127_2:0:0_1:0:0_a0/1 +GGCGGTTCCTGAATGAATGGGAAGCCATCAAGAAGGTGATAAGCAGGAGAAACATACGAAGGCGCATAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3373_3856_1:0:0_1:0:0_a1/1 +ATGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_263_758_1:0:0_1:0:0_a2/1 +TCGTCAAGGAGTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3981_4496_2:0:0_1:0:0_a3/1 +ATGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTGATTAATTTGACTTTGAGCGTATCGAGGCACTTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_728_1231_3:0:0_0:0:0_a4/1 +AACGTGACGATGAGGGACATAAAAAGTAAAAATGTCTACAGTAGAGTCAATAGCAAGGCCACGACGCAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3523_4034_2:0:0_2:0:0_a5/1 +TGCTTGCTAATCCACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4079_4503_2:0:0_3:0:0_a6/1 +TACTCTTTCACAATCCCCAATGCTTGGCTTCCATAAGCAGAAGGATAACCGCATCAAGCTCTTGGAAGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_562_1069_2:0:0_1:0:0_a7/1 +GCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCATTCCTGCTCCTGTTGAGTTTATAGCTGCCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2942_3462_0:0:0_1:0:0_a8/1 +CAGCAATCTCTTTTTGAGTCTCATTTTGCATCACGGCAATCTCTTTCTGATTGTCCAGTTGCATTTTAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2320_2820_1:0:0_3:0:0_a9/1 +AAGATAAACATTATTGCCCGGGGTACGGGGAAGGACGTCAATAGTCAGACAGTCCTTGACGGTATAATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2745_3285_1:0:0_2:0:0_aa/1 +TGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAAAAATGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4824_5276_2:0:0_1:0:0_ab/1 +TTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAAAAGCTTGCAAAATACGTGGCCTTATGTTTACAGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3329_3814_0:0:0_1:0:0_ac/1 +ACCACACCCGAAGCAGCATCAGTGACGACATTAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAGAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4200_4650_0:1:0_0:0:0_ad/1 +GTTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATTAGTTTGTATCTGTTACTGAGAAGTTAATGGATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4138_4609_4:0:0_0:0:0_ae/1 +TCATGTAAGCGATTCTGTCTTTTCGTATGCAGGGCTTTGAGTTCGATAATGGTGATATGTATGTTGACGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3169_3682_3:0:0_0:0:0_af/1 +GTAAAGGACTTCTTGAAGGTACGTATCCGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_328_784_1:0:0_2:0:0_b0/1 +TTAAAAGAGCGTGGATTACTATCTGAGTCGGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4769_5219_1:0:0_1:0:0_b1/1 +GTAACCCAGCTTGGTAAGTTGGATTAAGCACTCCGTGGACAGATTTGTCCTTGTGAGCATTTTCATCCCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1570_2095_2:0:0_3:0:0_b2/1 +AAGGTGATAAGCAGGAGAAAGATACGAAGGCGCATAACGATACCACTGACCCTCAGCAAACATAAACTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_261_824_0:0:0_1:1:0_b3/1 +ATTTTGACGCACGTTTTCTTCTGCGTCAGTAAGAACGTCAGTGTTTCCTGCGCGTCCACGCAAGGTAAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4563_4949_3:0:0_0:0:0_b4/1 +CCACAACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGAACTGCGATGGGCATACTGTAACCATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1980_2534_2:0:0_2:0:0_b5/1 +GTGAAATTTCAATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGGTGAGGGTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3168_3623_1:0:0_3:0:0_b6/1 +GGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATCAGTTGCTTGATTTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2339_2763_1:0:0_1:0:0_b7/1 +GACGGTATAATAACCACCATCATGGCGACCAATCAAAGGATAAACATCATAGGCAGTCGGGAGGGTAGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3863_4342_5:0:0_2:0:0_b8/1 +TCCCCTTCGGGGCTGTGGTCTATAGTGTTATTAATATCAAGTTGGGGGAGCACATTGTAGGATTGTGCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1551_2176_2:0:0_0:0:0_b9/1 +TGACGACTTCTACCACATCTATTGACATTATGGGTGAGCAAGCTGCTTATGCTAATTTGCATACTGACCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1215_1673_2:0:0_0:0:0_ba/1 +CTCCAAATGAAGAAATAACATCACGGTAACGCTGCATGAAGTAATCACGTTCTTGGTCAGTATGCAAATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_228_718_0:0:0_0:0:0_bb/1 +GGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2551_3037_0:0:0_1:0:0_bc/1 +TCACCTTGAATGCCACCGGAGGCGGCTTTTTGACCGGCTCCAAACAATTTAGACATGGCGCCACCAGCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1040_1532_2:0:0_0:0:0_bd/1 +TCTCAGGAGGAAGCGGAGCAGTCCAAATGTTTTTGAGATGGCAGCAACGGAAACCATAACGAGCATCATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1632_2185_1:0:0_2:0:0_be/1 +ACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGGTGACAACCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3105_3690_1:0:0_0:0:0_bf/1 +TCTAATTTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_482_958_1:0:0_1:0:0_c0/1 +AGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTGTCGTGCTCGTCGCTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4295_4694_3:0:0_0:0:0_c1/1 +CCCCCAACTTGATATTAATCACACTATAGACCACCGCCCCGAAGGGGACGCAAAATGGTTTTTAGAGAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3158_3581_1:0:0_2:0:0_c2/1 +GGTGATTTCCATAATAGACGCAAGGCGAGCAGTAGACTCCTTCTGTTGATAAGCAAGCATCTCATTTTGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3443_3980_1:0:0_1:0:0_c3/1 +AAAAAAGGCTCCAAGATTTGGAGGCATGAAAACATACAATTGGGAGGGTGTCAATCCTGACGGTTATTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3949_4379_2:0:0_2:0:0_c4/1 +CGTAACCGTCATCTCGTTCTCTAAAAACCATTATTCGTCCCCTTCGGGGCGGTGGTCTATAGTGTTATTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3648_4160_0:0:0_2:0:0_c5/1 +AAAAGACATAATCTCTTCCCAGAGCTTGATGCGGTTATCCATCTGCTTATGGAAGCCAAGCATTGGGGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1602_2103_0:0:0_0:0:0_c6/1 +CTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3882_4411_4:0:0_3:0:0_c7/1 +GCTGATGGTAATGGCTGAAATTTGTCTAGGAAATAACCGTCAGGATTGACACCCTCCCAATTGTATGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2868_3414_2:0:0_1:0:0_c8/1 +GGTTTCGCAGAATCAGGTTATTAAAGAGATTAATTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1114_1605_0:0:0_1:0:0_c9/1 +TTAGCATAAGCAGCTTGCAGACCCATAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCGATAAAGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2919_3389_1:0:0_0:0:0_ca/1 +GTGATGTGATTTATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2064_2531_2:0:0_2:0:0_cb/1 +CGCCTACGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTACTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4000_4497_3:0:0_0:0:0_cc/1 +TAGTGGAGGCCTCCAGCAATCTTGAACACTCATCCTTAATACCTTTCTTTTTGGGGTAATTATACTCATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4743_5249_3:0:0_1:0:0_cd/1 +CTTCAATATCTGGTTGAACGGCGTCGCGTCGAAACCCAGCTTGGTAAGTTGGATTAAGCACTCCGTGGAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1935_2414_2:0:0_3:0:0_ce/1 +GCGATAATGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_408_1018_1:0:0_1:0:0_cf/1 +AGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGGCCCTGCAATTAAAATTGTTGACCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2229_2741_1:0:0_0:0:0_d0/1 +TGGCGACCATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGTAGTCGGAACCGAAGAAGACTCAAAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1826_2374_2:0:0_0:0:0_d1/1 +TTCTTTTTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTACCGCCTACTGCGACTAAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3451_3890_2:0:0_1:0:0_d2/1 +ACCATCATCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATACCATGAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4699_5194_0:0:0_2:0:0_d3/1 +AAGCACTCCGTGGACAGATTTGTCATTTTGAGCATTTTCATCCCGCAGTTGCGGCTCATTCTGATTCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1091_1593_1:0:0_1:0:0_d4/1 +ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGCGATGGACGCCGTTGGCGCTCTCCGTCTTTCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_150_647_3:0:0_0:0:0_d5/1 +ATCCTTGCGCAGCTCGAGAAGCACATACTTTGCGACCTTTCGCCATCAAGTAACGATTCTGTCAAAAACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1864_2257_2:0:0_1:0:0_d6/1 +GGTCGGGAGATTGCGATAAACGGTCACATTAAATTTAACCTGACTATTCCACTGCAACAACTGAACGGAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4644_5182_0:0:0_1:0:0_d7/1 +GACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4693_5191_0:0:0_3:0:0_d8/1 +AGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3586_4112_2:0:0_0:0:0_d9/1 +TTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCATACTCAAGCTCAAACGGCTTGTCAGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2392_2930_1:0:0_0:0:0_da/1 +AAATCACCTCACTTAAGTGGCTGGAGACAAATAATCTCTTTAATAACCTGATTCAGCGAAACCAATCCGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2478_3008_4:0:0_1:0:0_db/1 +GGCACCTTTTTTACAGACAGCAACAGCTACATCGTCAACGTTATATTTTGATAGTTTGACGGTTAATGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1544_2075_0:0:0_1:0:0_dc/1 +CGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3280_3806_0:0:0_0:0:0_dd/1 +CTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1144_1599_0:0:0_1:0:0_de/1 +TAAGCAGCTTGCAGACCCATAATGACAATAGATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCTCAGTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1403_1962_1:0:0_1:0:0_df/1 +TACAAAACAGGGTCGCCAGCAATCTCGGTATAAGTCAAAGCACCTTTAGCGTTAAGGTACTGAATCTCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_611_1095_1:0:0_2:0:0_e0/1 +GAAATGGTACTAAGACGACCAATCTGACCAGCAATGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2647_3113_2:0:0_0:0:0_e1/1 +CCTAAAAATTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4243_4709_0:0:0_2:0:0_e2/1 +GTGTGAATCATTAGCCTTGCGACCCTCGGCAGCAAGAACCATACGAGCAATATCAGGAAAATAGTCACGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_886_1364_1:0:0_4:0:0_e3/1 +TAGGGATTTTATTGGTATCAGTGTAAATGGTGCCAAGAAAAGCGGCATGGTCAATATAACGAGTAGTGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2736_3284_0:0:0_2:0:0_e4/1 +TCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3296_3778_0:0:0_3:0:0_e5/1 +TGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4409_4865_1:0:0_2:0:0_e6/1 +CAAGCTATTTAACTGGCGTCGATTGCTTACCCGACGACCAAAATTAGGGTCAACGCTACCTGTAGGAAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3061_3557_2:0:0_0:0:0_e7/1 +CTGTAGGCATGGGTGATGCTTGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTACCCCTGATGAGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_172_742_2:0:0_1:0:0_e8/1 +GCGGCTTTAACCGGACGCTCGACGCCATTAATAATGTTTTGCGTAAATTCAGCGCCTTCCATGATGAGAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1836_2213_0:0:0_2:0:0_e9/1 +CTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_628_1078_2:0:0_0:0:0_ea/1 +ACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCTCGGCGCCAGTTTGAATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1523_2053_2:0:0_1:0:0_eb/1 +CCACTGACCCTCAGCAATCTTAAACTTCTTAGACGAATCACCAGAACGGAAAACATCCTTCATAGACATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3051_3557_0:0:0_1:0:0_ec/1 +GATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3442_3894_1:0:0_2:0:0_ed/1 +AGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACTCCAGAATACGAAAGACCAGGTATATGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_554_1043_0:0:0_1:0:0_ee/1 +TGAGGCTTGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_525_1086_4:0:0_2:0:0_ef/1 +ATAAGACGACCAATCTGACCAGCAAGGAAGCCAAGAAGGGAAAGGTCATGCGGCATACGCTCGGCGCCCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_252_783_1:0:0_2:0:0_f0/1 +TGTTTCCTGCGCGTACACGCAAGGTAAACGCGAAGAATTCAGCGGCTTTAACCGGACGCTCGACGCGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1844_2328_3:0:0_4:0:0_f1/1 +ACTTTTTACCGCTTCGGCGTTATAACCTCACACTCAATCTTTTATCCCTAAGTCATGATTGAAACGCGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4728_5242_2:0:0_2:0:0_f2/1 +TTTTGAGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTGATTTCCATGCGGTGCATTTTATGCGGACAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1380_1844_4:0:0_1:0:0_f3/1 +GTTATTTTAATATCTATAACAACTAAATAAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1836_2418_2:0:0_0:0:0_f4/1 +CTGAGCATGGCCCTATGTTTACTCTTGCGCTTGTTCGTTTTCCGGCTACTGCGACTAAAGAGATTCAGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3965_4512_3:0:0_3:0:0_f5/1 +CTCTACGCGATTTCATATTGGAGGCCTCCAGCAATCTTGAACACTCATCCTTAATACCTTACTTATTGGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2521_3106_0:0:0_2:0:0_f6/1 +GAGCCTTGAATGGCAGATTTAATACCCGCATCACCCATGCCTAGAGTATTGTTATCGGTAGCAAGCACAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3548_4026_4:0:0_2:0:0_f7/1 +TACTGCTCGCGATGCGTCTATTATGGAAAACACCCCTCTTTCCAAGCAACAGGAGGTTTCCGAGATTATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3334_3882_0:0:0_4:0:0_f8/1 +GTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_532_1102_2:0:0_2:0:0_f9/1 +AGTAGTTGAAATGGTAATAAGAGGACCAATCTGACCAGCAAGGAAGCCAAGATGTGAAAGGTCATGCGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4094_4577_0:0:0_1:0:0_fa/1 +CCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2618_3113_5:0:0_0:0:0_fb/1 +ATGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTAGCCTGTATGGTTCTCTTTGAGTCTTCATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_163_597_2:0:0_2:0:0_fc/1 +GAGGGTAACCCACAAAGTCCAGCGTACCATAAACGCAAGCCTCAAGGCAGCGACGAGCACGAGAGCGGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4445_4909_0:0:0_1:0:0_fd/1 +CAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1822_2356_4:0:0_1:0:0_fe/1 +GCGTTTGTTTGATCCTGAGCATGGCACTATGTTTACTCTTGCGCTTTTTCGTTTTCCGCCTACTGCGACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3709_4230_4:0:0_2:0:0_ff/1 +ACTTAGTTCATCAGCAAACGCAGAATGATCGGTATTGCTCTTCTCATATTGGCGCTACTGCAAAGGATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1714_2209_0:0:0_3:0:0_100/1 +CCACTGCAACAACTGACGGGACTGGAAACACTGGTCATAATCATGGTGGCGAAAAAGTACGCGTTCTTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3867_4376_3:0:0_2:0:0_101/1 +AACCGTCTTCTCGTTGTCTAAAAACCATTTTTCGTCCGCTTCGGGGCGGTGGTCTATAGTGTTATTAATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2460_3043_1:0:0_2:0:0_102/1 +TGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACGTAAAGCTACATCGTCAACGTTATATTTTGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3713_4206_2:0:0_2:0:0_103/1 +AGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCACATATTGGCGCTACTGCAAAGGATATTTGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2721_3306_2:0:0_0:0:0_104/1 +GAAATGCAGCAGCAAGATAATCACGAGTATCCTTTCCTTTATCAGCGGCAGACTTGCCACCAAGTCCAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1018_1498_3:0:0_1:0:0_105/1 +GAGATGGCAGCAACTGAAACCATAACGAGCATCATCTTGATTAAGCTCATTAGGGTTAGCCTCGGTACGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1284_1710_2:0:0_0:0:0_106/1 +AGTAAAGGACGGTTGTCAGCGTCATAAGAGGTTTTACCTCCAAATGAAGAAATAACATCACGGTAACGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1033_1548_2:0:0_0:0:0_107/1 +TGGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTCCAAATGTTTTTGAGATGGCAGCAACGGAAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4831_5285_3:0:0_1:0:0_108/1 +GTCGGGTACGCAATCTCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGATACAGTAAGCCCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2657_3087_1:0:0_3:0:0_109/1 +TAATACCAGCATCACCCATTCCTCCAGTATTGTTATCGGTAGCAAGCACAACACCTTGAATGCCACCGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1558_2049_1:0:0_2:0:0_10a/1 +TTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGGATACTGACCAAGAACGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4270_4826_3:0:0_1:0:0_10b/1 +AATTGGCACAATGCAACAATGTTCTCCCCCAACTTGATATTAATAACACTATATACCACCGCCCCGAAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_245_746_4:0:0_0:0:0_10c/1 +TTCAGCGGCTTTAACCGGACGCTCGACGCCATTAATAATGTTTTCCGTAAATTCAGCGCCTTCCATGATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1484_2067_3:0:0_4:0:0_10d/1 +CGTTGCTTCCATCACAAAAACATTAGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4404_4883_0:0:0_2:0:0_10e/1 +ATAAGGCCACGTATTTTGCAAGCTATTTAACTGGCGGCGAATGCGTACCGGACGACCAAAATTAGGGTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4167_4648_0:1:0_1:0:0_10f/1 +TAGTCACGCAAAGCATTGGGATTATCATAAAACGCCTCTAATCGGACGTCAGCCAACGTGAGAGTGTCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3950_4508_1:0:0_2:0:0_110/1 +ACGCGATTTCATAGTGGAGGCCTCCAGCAATCTTGAACACTCAACCTTAATACCTTTCTTTTTGGGGTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3867_4438_3:0:0_2:0:0_111/1 +TTATACTCATCTCGAATATCCTTAAGAGGGCGTTCAGCAGCCAGCTTGCGGCAAAACTGCGTAAGCGTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2104_2648_3:0:0_0:0:0_112/1 +GGGTCGGCATCAAAAGCAATATCAGCACCAACAGAAACAACCTGATTAGCGGCGTTGACAGATGTATCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2926_3403_1:0:0_2:0:0_113/1 +TTCATTTTAGTAAGCTCTTTTAGATTCTCAAATCCGGCGTCAACCATACCAGCAGAGGAAGCATCAGCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4629_5079_0:0:0_1:0:0_114/1 +CCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3495_4038_0:0:0_0:0:0_115/1 +TACGCTCAAAGTCAAAATAATCAGCGTGACATTCAGAAGGGTAATAAGAACGAACCATAAAAAAGCCTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2240_2752_2:0:0_1:0:0_116/1 +TATCGCAATCTGCCGACCACTCGCGAATCAATCATGACTTCGTGATACAAGATTGAGTGTGAGGTTATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2863_3382_3:0:0_1:0:0_117/1 +GGATTTGTTTCGCTGAATCATGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTTATTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2084_2609_0:0:0_1:0:0_118/1 +GCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_777_1121_2:0:0_2:0:0_119/1 +GTAAACAGTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2457_2911_2:0:0_0:0:0_11a/1 +TTCTGTTACTCCAGCTACTTCGGCACCTGTTATACAGACACCTAAAGCTACATCGTCAACGTTATATTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4441_4959_1:0:0_2:0:0_11b/1 +ACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACAATGAAATCGCGTAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3215_3777_2:0:0_2:0:0_11c/1 +AACTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2274_2778_2:0:0_1:0:0_11d/1 +ATTCACACAGTCCTTGACGGTATAATAACCACCATCATGGCGACCATTCAAAGGATAAACATCATAGGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2330_2871_4:0:0_1:0:0_11e/1 +AACCAATCCTCGGCATTTAGTAGCGGTAAAGTTAGACCAAACCATGAAACCAACATAAACATTATTGCCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1710_2259_0:0:0_0:0:0_11f/1 +TTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3034_3491_3:0:0_0:0:0_120/1 +ATTCTGGCGTGAAGTCGCCGACTGAATGCCAGCAATCTCTTTTTGAGTCTCATTTTGCATCTCGGCAATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4164_4559_1:0:0_2:0:0_121/1 +ATGCAGGGCGTTGAGTTCGATAATGGTGATATGTCTGTTGACGGCCATAAGGCTGCTTCTGACGTTCGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4777_5231_1:0:0_5:0:0_122/1 +CTGCGTCGGTTCGAAACCCAGCTTGGTAAGTTGGATAAAGCACTCCGTGGACAGATTTGTCATTGTGAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_947_1501_1:0:0_4:0:0_123/1 +TTTGAGATGGCAGCAACGGAAAGCATAACGAGCAACATCTTGATTAAGCTCATTAGGTTTAGCCTCGGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2267_2753_1:0:0_0:0:0_124/1 +ACAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGGTAAAAATTTTAATTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4206_4670_0:0:0_1:0:0_125/1 +GGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4609_5049_0:0:0_2:0:0_126/1 +TAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1650_2185_1:0:0_0:0:0_127/1 +GAAACACTGGTCATAATCATGGTGGCGAATAAGTACGCGTTCTTGCAAATCACCAGAAGGCGGTTCCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2369_2816_0:0:0_3:0:0_128/1 +TAGGTTTTCTGCTTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2788_3330_0:0:0_2:0:0_129/1 +CACGCTCCCAAGCATTAAGCACAGGAAATGGAGCAGCAAGATAATCACGAGTATCCTTTCCTTTATCAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4545_5151_0:0:0_1:0:0_12a/1 +CGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4844_5303_1:0:0_1:0:0_12b/1 +GTCGGCTACCGTAACTTTTCCCAGCCTCAATCTCATCTCTCTTTTTGCGTTCTGCTTCAATATCTGGTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2222_2679_1:0:0_1:0:0_12c/1 +AAATTTAATGTGACCGTTTAACGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2444_2928_2:0:0_2:0:0_12d/1 +ATCACCTCACTTAAGTGGCTGGAGACAAATAATCTCTTTACTAACCTGATACAGCGAAACCAATCCGCGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4092_4573_1:0:0_0:0:0_12e/1 +ATAAACCAACCATCAGCATGAGCCTGTCGCATTGCATTCATCAAACGCTGAATAGTAAAGCCTCTACGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_834_1362_4:0:0_1:0:0_12f/1 +GGGATTTTATTGGTATCAGGGTTAATCGTGCCAATAAAAGCGGCATGGTCAATATAACCAGTAGTGTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2780_3264_1:0:0_0:0:0_130/1 +CAGCGGCAGACTTGCCACCAAGTCCAACCAAATCAAGCAACTTATCAGAAACGGCAGAAGTGCCAGCCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_843_1287_5:0:0_2:0:0_131/1 +GGGAGAGGAGTGGCATTAACACGCTCCTTCATGAACTTAATCCACTGTTCACCATAAACGTGACGATGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_646_1200_1:0:0_0:0:0_132/1 +ATGTCTACAGTAGAGTCAATAGCAAGGCCACGACGCAATGGAGAAAGACGGAGAGCGCCAACGGCGTCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3270_3825_2:0:0_0:0:0_133/1 +GAAAAATATCAACCACACCAGAAGCAGCATCAGTGACGACATTAGAAATATCCTTTGCAGTAGCGCCAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1467_1933_2:0:0_3:0:0_134/1 +ATGCTCGTTATGGTTTCCGTTGCTGCGATCTCAAAAACATTTGGCCTGCTCCGCTTCCTCCTGAGACTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4607_5096_3:0:0_0:0:0_135/1 +ATTAGAGGCTTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCTTGATATTGGTGGTATGGTTCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_728_1261_2:0:0_1:0:0_136/1 +CTTCATGACCTTAATCCACTGTTCACCATAAACGTGACGATGAGGGACATAAAAAGTAAAAATGTCTACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4410_4853_0:0:0_0:0:0_137/1 +CTGGCGGCGATTGCGTACCCGACGACCAAAATTAGGGTCAACGCTACCTGTAGGAAGTGTCCGCATAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4352_4929_0:0:0_3:0:0_138/1 +AAAAAGCGTCCTGCGTGTAGCGAACTGCGATGGGCATACTGTAACCATAAGGCCACGTAATTTGCAATCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1956_2434_1:0:0_1:0:0_139/1 +AAAAGATTGAATTATGGCGAGAAATAAAAGTCTGAAACATGATTAAACTCCTAAGCAGAAAACCTACCGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3149_3669_0:0:0_1:0:0_13a/1 +TGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4171_4684_8:1:0_0:0:0_13b/1 +GCGATGCGTTCGCTAATGGTGATCTGAAAGTTGACGGCCATAAGGCTGCTTCTTACGTTCGTGATTCGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2475_3030_2:0:0_4:0:0_13c/1 +TTCGGCACCTGTTTTAGAGACACCTAAAGCTACATCGTCCACGTTATATTTTGATAGTTTGACGGTTAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2950_3525_2:0:0_2:0:0_13d/1 +GCATCTCATTTTGTGCATATACCTGGTCTATCGTATTCTGGCGAGAAGTCGCCGACTGAATGCCAGCAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4023_4465_2:0:0_4:0:0_13e/1 +TTTGACTTTGAGGGTATCGAGTCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTCTACTCTTTCTCAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3513_4054_2:0:0_0:0:0_13f/1 +CAAAATGAGATGCTTGCTTATCAACAGCAGGAGTCTACTGCTCGCGTTTCGTCTATTATGGAAAACACCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3003_3447_4:0:0_0:0:0_140/1 +GAGTCTCATTTTGCATCTCGGCAATCTCTTTCTGATTGTCCAGTTGCATTTTAGTAAGCTCTTTTTGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2630_3159_1:0:0_2:0:0_141/1 +TTGCTTTTGATGCCGACCCTAAATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTACCGACTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_991_1469_1:0:0_0:0:0_142/1 +AGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGGCGCATGACCTTTCCCATCTTGGCTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3107_3521_2:0:0_1:0:0_143/1 +CTCATTTTGTGCATATACCTGGTCTTTCGTATTCTGGCGTGCAGTCGCCGACTGAATGCCAGCAATCTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_510_1017_1:0:0_1:0:0_144/1 +GTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCCTGCAATTAAAATTGATGACCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2494_2909_4:0:0_1:0:0_145/1 +TGGAGACAAATAAACTCTTTAATAACCTGATTCAGCGAAACCAATCCGCGGCATTTAGTAGCGGTAAAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2323_2835_0:0:0_1:0:0_146/1 +AAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1369_1897_0:0:0_2:0:0_147/1 +CTCTTTAGTGGCAGTAGGCGGAAAACGAACAATCGCAAGAGTAAACATAGTGCCATGCTCAGGAACAAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_373_836_1:0:0_2:0:0_148/1 +CTAATAGGTAAGAAATCATGCGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2718_3231_1:0:0_1:0:0_149/1 +TGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTCTTGACGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1807_2308_0:0:0_4:0:0_14a/1 +TATAACCTCACAGTCAATCTTTTATCACGAAGTCATGATAGAATCGCGAGTGGTCTGCAGATTTCGATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3672_4168_0:0:0_2:0:0_14b/1 +TGCATACGAAAAGACAGAATGTCTTCCACGAGCTTGATGCGGTTATCCATCTGCTTATGGAAGCCAAGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_213_698_1:0:0_0:0:0_14c/1 +AAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCTTCAAGGACTGGTTTAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2409_2834_3:1:0_0:0:0_14d/1 +TATTTCTCGCCATAATTCAACCTTTTTTTCTGATAAGCTGGAACTCACTTCTGTAACTCCAGCTTCTTCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_815_1375_1:0:0_0:0:0_14e/1 +GCGTCAAAAATTACGTGCAGAAGGAGTGATGTCATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1904_2377_0:0:0_1:0:0_14f/1 +GAAAACGTACCGCGCTTCGCTTGGTCAACCCCTCAGCGGCAAAAATTAAAATTTTTACCGCTTCGGCGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2653_3132_3:0:0_4:0:0_150/1 +TTTTTTTCCTGTTTGGTTCGCTTTGAGTCATCTTCGGTTCCGACTACCCTCCCGACAGCCTATGATGTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2538_3069_0:0:0_0:0:0_151/1 +TGCCTACAGTATTGTTATCGGTAGCAAGCACATCACCTTGAATGCCACCGGAGGCGGCTTTTTGACCGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4204_4693_0:1:0_4:0:0_152/1 +TTGCGACCGTCGGCAGCAAGAACCATACGACCAATATGACGAACATAGTCACGCAAAGCATTTGGATTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3483_3892_1:0:0_2:0:0_153/1 +CGCCAGAATACGAAAGACCAGGTATATGCACAACATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1269_1748_0:0:0_4:0:0_154/1 +TTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_658_1184_3:0:0_0:0:0_155/1 +CAATAGCAAGGCCACGACGCAATGGAGAAAGACGGAGAGCGCCAACGGCGTCCATCTCGAAGGAGTCGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3380_3876_1:0:0_2:0:0_156/1 +TCAAAAAGAGCTTACTAAAATGGAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGACTCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4780_5302_3:0:0_0:0:0_157/1 +TGCATTTTATGCGGACACTTCCTACAGGTATCGTTGACCCTAATTTTGGTCGTCGGGTACGGAATGGCCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3179_3727_0:0:0_2:0:0_158/1 +GTTTGCTGATGAACTACGTCAACCTCAGCACTAACCTTGCGAGTGATTTCTTTGATTTGGTCATTGGTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1619_2138_3:0:0_0:0:0_159/1 +CAAGAACTTGATTACTTCATGCAGCGTTACCGTGATGTTATTACTTCATTTGGAGGTAACACCTCTTATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3249_3794_2:0:0_1:0:0_15a/1 +GGCCAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTGCTGAGCTTAATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1838_2396_2:0:0_1:0:0_15b/1 +ATGATTAAACTCCTAAGCAGAAAACCTACCTCGCTTCGCTTGGTCAACCCCTCAGCGGCAAAAATTAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1353_1755_0:0:0_2:0:0_15c/1 +ATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3326_3882_2:0:0_1:0:0_15d/1 +CATTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATACCATGAAAAATATCAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_650_1215_2:0:0_0:0:0_15e/1 +ACATAAAAAGTAAAAATGTCTACAGTAGAGTCAATAGCAAGGCCACGACGCAATGGAGAAAGACGGAGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1532_2061_0:0:0_2:0:0_15f/1 +ACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1320_1798_1:0:0_1:0:0_160/1 +TTGCACACGACCAGAAAACTGGCCTAACGACGTTTGGTCAGTTCCATCAACATCATAGCCAGATGCCCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1896_2319_0:0:0_3:0:0_161/1 +CGCTTCGGCGTTATCACCTCCCACTCACTCTTTTATCACGAAGTCATGATTGAATCGCGAGTGGTCGGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2219_2691_0:0:0_0:0:0_162/1 +GTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2251_2847_1:0:0_1:0:0_163/1 +GGTAAAGTTAGACCAAACCATGAAACCCACATAAACATTATTGCCCGGCGTACGGGGAAGGACGTCAATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_845_1299_1:0:0_2:0:0_164/1 +GTAATGTCTAAAGGTAAAAAACGTTCTGGCTCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_799_1282_0:0:0_0:0:0_165/1 +ACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1799_2324_1:0:0_1:0:0_166/1 +TTTACCGCTTCGGCGTTATAACCTCACACTCAATCTTTTATCACGAAGTCATGATAGAATCGCGAGTGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4783_5286_3:0:0_0:0:0_167/1 +ATTTTATGCGGACCCTTCCTACAGGTAGGGTTGACCCTCATTTTGGTCGTCGGGTACGCAATCGCCGCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1171_1747_1:0:0_1:0:0_168/1 +ATCATAGGCAGATGCCCAGAGATTAGAGCGCATGACAAGTAAAGGACGGTTGTCAGCGTCATAAGAGGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1378_1811_1:0:0_1:0:0_169/1 +GTTTATAGGTCTGTTGAACACGACCAGAAAACTGGCCTAACGACGTTTGGTCAGTTCCATCAACATCATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3494_3903_2:0:0_2:0:0_16a/1 +AATTAGAGCCAATACCATCAGCTATACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGGTTTATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3051_3546_1:0:0_2:0:0_16b/1 +GATAACAATACTGTAGTCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4761_5246_1:0:0_2:0:0_16c/1 +CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACATCCTACAGGTAGCGTTGACCCTAATTTTGGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1408_1884_1:0:0_1:0:0_16d/1 +TAAAGCGCCGTGGATGCCTGACCGTACCGAGTCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2046_2510_1:0:0_2:1:0_16e/1 +GTCCGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3101_3478_2:0:0_1:0:0_16f/1 +AGGCTCTAATGTTCCTAACCCATATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_46_522_6:0:0_1:0:0_170/1 +ATCTGCAGAGTCGAAAAATTATCTTGATAAAGGAGGAATTACTACTGCTAGATTACGAATTAAATCGAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1559_2008_1:0:0_2:0:0_171/1 +TCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTCTGCTAATTTGCATACTGACCAAGAACGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2664_3190_1:0:0_3:0:0_172/1 +GTACCTACAAGAAGTCCATTACCAGCTTTAGCCATAGCACCAGAAACAAAACTAGGGGCTGCCTCATCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2281_2810_1:0:0_0:0:0_173/1 +GTGATAAAAGATTGAGTGTGAGGTTAAAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2317_2686_1:0:0_2:0:0_174/1 +GCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTTACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1208_1696_2:0:0_2:0:0_175/1 +TTTTATGTCCCTCAACGTCACGTTTATGGTGACCAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2632_3141_3:0:0_4:0:0_176/1 +AACTAGGGGGGGGCTGATCAGGGTTAGGAACATAAGAGCCTTGAATGGCAGATTTAATACCAGCATCACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4736_5291_1:0:0_1:0:0_177/1 +AACTTTTCCCAGCCTCAATCTCATCTCTCTATTTGCGTTCTGCTTCAATATCTGGTTGAACGGCGTCGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3350_3791_2:0:0_3:0:0_178/1 +TGCTGGTATGGATGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCCACTGGACAATCAGAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3234_3580_2:0:0_1:0:0_179/1 +GTGTTTTCCATAATAGACGCAACGCGAGCAGTAGCCTCCTTCTGTTGATAAGCAAGCATCTCATTTTGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4141_4674_2:0:0_1:0:0_17a/1 +TGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATACTGGTGATAAGTATGTTGACGGCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_430_934_2:0:0_0:0:0_17b/1 +CTTTGGCCTCTATTAAGCTCATTCAGGCATCTGCGGTTTTGGATTTAACCGAAGATGATTTCGATTTTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2455_3023_2:0:0_0:0:0_17c/1 +ACCGGAGGCGGCTTTTTGACCGCCTCCAAACAATTTAGACATGGCGCCACCAGCAAGAGCAGAAGCAATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1518_1973_2:0:0_3:0:0_17d/1 +GCAAGATGCCATACAAAACAGGGTCGCCAGCAATATCGGTATAAGTCAAAGCACCATTAGCTTTAAGGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4695_5207_1:0:0_0:0:0_17e/1 +GCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTTCCTGAGTATGGTACAGCTAATGGCCGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_617_1006_0:0:0_0:0:0_17f/1 +GTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4479_4950_1:0:0_1:0:0_180/1 +TTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3490_3952_0:0:0_3:0:0_181/1 +ATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_319_728_0:0:0_3:0:0_182/1 +ACGCTCGACGCCATTAATAATGTTTTCCGTCAATTGCGCGCCTTCCATGATGAGACAGGCCGTTTGAATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1858_2282_1:0:0_1:0:0_183/1 +TCTTGCGCTAGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2004_2506_0:0:0_1:0:0_184/1 +TAGCTTTAGGTGTCTGTAAAACAGGTGCCGAAGAAGCTGGAGTAACAGCAGTGAGAACCAGCTTATCAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_602_1105_1:0:0_3:0:0_185/1 +TCCTGCTCCTGTTGAGTTTATAGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2952_3480_3:0:0_3:0:0_186/1 +AAGACGCCGACTTAATGCCAGCAATCTCTTTTTGAGTCTCATTTTGGATCTCGGCAATCTCTTTCTGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2301_2843_0:0:0_1:0:0_187/1 +AAGTTAGACCAAACCCTGAAACCAACATAAACATTATTGCCCGGCGTACGGGGAAGGACGTCAATAGTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_22_543_0:0:0_1:0:0_188/1 +GCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_298_810_0:0:0_0:0:0_189/1 +TTTCTTCTGCGTCAGTAAGAACGTCAGTGTTTCCTGCGCGTACACGCAAGGTAAACGCGAACAATTCAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3859_4357_1:0:0_2:0:0_18a/1 +AAAAACCATTTTTCGTCCCCTTCGGGGCGGTGGTGTATAGTGTTATTAATATCAAGTTGGGGGAGCACAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2386_2882_0:0:0_1:0:0_18b/1 +TTATTCAGCGAAACCAATCCGCGGCATTTAGTAGCGGTAAAGTTAGACCAAACCATGAAACCAACATAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_686_1222_2:0:0_4:0:0_18c/1 +AGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTGCGGTTAAAGCGGCTGAATTGTTCGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_237_775_3:0:0_1:0:0_18d/1 +GAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGCGTCACATTTTGAACATGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2683_3176_2:0:0_0:0:0_18e/1 +TCTTCGTTTCCGACTACCCTCCCGACTGCCTATGATGTTTAACCTTTGAATGGTCGCCATGATGGTGGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2587_2995_0:0:0_1:0:0_18f/1 +TCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3811_4363_0:0:0_2:0:0_190/1 +TTCTCTAAAAACCATTTTTCGTCCCCATCGGGGCGGTGGACTATAGTGTTATTAATATCAAGTTGGGGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_122_530_3:0:0_2:0:0_191/1 +GTCAGTAGCAATCCAAACTTTGTTACTCTTCAGAAAATCGAAATCATGTTCGGTTAAATCCAAAACGGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_236_669_1:0:0_0:0:0_192/1 +AGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATCTGAGTCACATTTTGTTCATGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3470_4004_2:0:0_0:0:0_193/1 +GTGGGCGACTTCACGCCAGAATACGAAAGCCCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_571_1096_2:0:0_1:0:0_194/1 +TGAAATGGTAATAAGACGACCAATGTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_776_1244_1:0:0_2:0:0_195/1 +AGGAAACAGTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2455_2920_0:1:0_2:0:0_196/1 +ACTTCTGTAACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTATATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1718_2250_0:0:0_2:0:0_197/1 +AGATTGCGATAAACGGTCACATTACATTTAACCTGACTATTCCACTGCAACACCTGAACGGACTGGAAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3190_3751_0:0:0_2:0:0_198/1 +CGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3331_3851_0:0:0_3:0:0_199/1 +CTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4766_5215_1:0:0_1:0:0_19a/1 +CCCAGCTTGGTAAGTTGGATTAAGCACTCCGTGGAGAGATTTGTCATTGTGAGCATTTTCATCCCGAAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2701_3198_1:0:0_3:0:0_19b/1 +CTGCCGACTGCCTATGATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_627_1092_1:0:0_0:0:0_19c/1 +GCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGCAGGCGCTGAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1013_1383_2:0:0_1:0:0_19d/1 +CAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGGTTCCTTGCTGGTCAGATTGTTCGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1081_1579_1:0:0_0:0:0_19e/1 +TCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCGGTTGGCGCTCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1460_2036_1:0:0_2:0:0_19f/1 +CAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATATGGACTGCTCCGCTTCCTCCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3843_4322_3:0:0_2:0:0_1a0/1 +TATCGTGTTATTAATATCAAGTTGGGGGAGCACATTGTAGCATTGTGCCAATTCATCCATTACCTTCTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1481_2050_0:0:0_1:0:0_1a1/1 +CTGACCCTCAGCAATCTTAAACTTCTTAGACGAATCACCAGAACGGAAAACATCCTTCATAGAAATTACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1446_1947_4:0:0_2:0:0_1a2/1 +CTAAAGAGCTTAATCAAGATGATGCTCGTTCTGGTTTCCGTTGCTGCCCTGTCAAAAACATTTGGACTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1345_1917_1:0:0_5:0:0_1a3/1 +TTAGGGTTAAGGTACTTAATCTCTTTAGTCGCAGTAGGGGGAAAACGAACAAGCTCAAGAGTAAAGATAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1089_1572_0:0:0_4:0:0_1a4/1 +ATAGATGTGGTAGAAGTCGTGAATTGGCGAGAAAGCTCAGTCTGAGGAGGAAGCGGAGGAGTCCAAATGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1921_2362_1:0:0_3:0:0_1a5/1 +TTCGCTTGTACAACCCCTCAGCGGCAAAAATTAAAATTTTTACCGCTTCTGCGTTATAACCTCACACTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_659_1076_3:0:0_0:0:0_1a6/1 +CAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCTCGGCGCCAGTTTGAATATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2511_2948_1:0:0_0:0:0_1a7/1 +GTCAACGTTATATTTTGAAAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2128_2637_1:0:0_3:0:0_1a8/1 +TTCTGGTGATTTGCAAGAACGCGTACTTAATCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2085_2595_0:0:0_0:0:0_1a9/1 +CTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3202_3682_0:0:0_3:0:0_1aa/1 +ATTACTTTGATTAGGTCATTGGTAAAATACTGACCAGCCGTTTGAGCTTGAGTAAGCATTTGGCGCAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1146_1578_1:0:0_2:0:0_1ab/1 +CTCTCCTTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3461_3903_0:0:0_1:0:0_1ac/1 +TGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2879_3393_1:0:0_1:0:0_1ad/1 +ATCAGGTTATTAACGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGCTATTGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3563_4092_2:0:0_1:0:0_1ae/1 +ATAGAGAAAGAGTAGAAATGCCACAAGCCTCAATAGCAGGTTTAAGAGCCTCGATACGCTCAAAGTCAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4631_5121_1:0:0_1:0:0_1af/1 +GCTTCTTGGGAAGTAGCGACAGCTTGGTTTTTAGTGAGTTGTTCCATTCTATAGCTCCTAGACCTTTAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4545_5053_0:0:0_2:0:0_1b0/1 +TCAGCAAGGTCCATATCAGACTTTTTGTTAACGTATTTAGCCACATAGAAACCAACAGCCATATAACTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2102_2673_2:0:0_1:0:0_1b1/1 +GGCTTCCCATTCAATCAGGAACCGCCTACTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4424_4979_2:0:0_1:0:0_1b2/1 +TCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTTTTCAAGATTGGTGGAGGCCTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4411_4876_2:0:0_0:0:0_1b3/1 +CTCTTACGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGAGTTCAAGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_906_1382_1:0:0_1:0:0_1b4/1 +AACCCTGAAACAAATGCTTAGGGAATTTATTGGTATCAGGGTTAATCGTGCCAAGAAAAGCGGCATGGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3494_4032_1:0:0_0:0:0_1b5/1 +CAAAGTCAAAATAATCAGCGTGACATTCAGAAGGGTAATAAGAACGAACCATAAAAAAGCCTCCAAGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3517_3986_3:0:0_2:0:0_1b6/1 +AACCATAAAAAAGCCTCCAAGATTTGGAGGCATGAAAACATACAAATGGGAGGGTGTCAAACCTGACGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_636_1180_0:0:0_3:0:0_1b7/1 +AGCAAGGCCACGACGCACTGGAGAAAGACGGAGAGCGCGAACGGCGTCCATCTCGAAGTAGTCGCCAGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1802_2252_1:0:0_1:0:0_1b8/1 +GCAGATTGCGATAAACGGACACATTAAATTTAACCTGACTATTCCACTGCAACAACTGAACGGACTGGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4015_4468_2:0:0_2:0:0_1b9/1 +CTGATTATTTTGCCTTTGAGCGTATCGAGGCTCTTACACCTGCTATTGAGGCTTGTGGCATTTCTACTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3002_3515_1:0:0_1:0:0_1ba/1 +CGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACCATACTGTAGGCATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3831_4383_2:0:0_1:0:0_1bb/1 +AGTGCGTAACCGTCTTCTCGTTCTCTAAAAACCATTTTTCGTCCCCTTCGGGGCGGTGGTCTATAGTGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2366_2810_0:0:0_0:0:0_1bc/1 +TTATTGCCCGGCGTACGGGGAAGGACGTCAATAGTCACACAGTCCTTGACGGTATAATAACCACCATCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3593_4041_2:0:0_1:0:0_1bd/1 +CGATACGCACAAAGTCAAAATAATCAGCGTGACATTCAGAAGGGTAATAAGAACGAACCATAAAAAAGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_284_594_3:0:0_3:0:0_1be/1 +GGTATCCCCCAAAGTCCAGCGTAGCATCAACGCAAGCCTCAACGCAGCGACGAGCACGAGAGCGGTCAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_694_1158_1:0:0_2:0:0_1bf/1 +AATTTACGGAACACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3656_4122_2:0:0_0:0:0_1c0/1 +CCATCTGCTTATGGAAGCCAAGCATTGGGGATTGAGAAAGAGTAGAAATGCCACAAGCCTCAATAGCAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1839_2262_1:0:0_1:0:0_1c1/1 +CGAGTGGTCGGCAGATTGCGATAACCGGTCACATTAAATTTAACCTGACTATTCCACTGCAACAACTGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4733_5272_1:0:0_1:0:0_1c2/1 +CTCATCTCTCTTTTTGCGTTCTGCTTCAATATCTGGTTGAACGGCGTCGCGTGGTAACCCAGCTTGGTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3991_4443_1:0:0_3:0:0_1c3/1 +CTTATTACCCTTCTGAATGTCACGCTGATTATTATGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4068_4551_0:0:0_0:0:0_1c4/1 +CCTGTCGCATTGCATTCATCAAACGCTGAATAGTAAAGCCTCTACGCGATTTCATAGTGGAGGCCTCCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3236_3794_1:0:0_2:0:0_1c5/1 +GGTTGGACTTGGTGGCAAGTCTGCCGCTGAAAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2950_3435_3:0:0_2:0:0_1c6/1 +GCGGTATTGCTTCTGCTCTTGCTTGTGGCGCCATGTCTAAATTGTTAGGAGGCGGTCACAAAGCCGCCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4444_4991_0:0:0_2:0:0_1c7/1 +CCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_177_628_1:0:0_0:0:0_1c8/1 +CTTTGCGACCTTTCGCCATCAACTAACGATTCTGTCAAAACCTGACGCGTTGGATGAGGAGAAGTGGCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_982_1480_1:0:0_2:0:0_1c9/1 +CCTTACTAGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2020_2542_0:0:0_1:0:0_1ca/1 +GTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4604_5048_0:0:0_0:0:0_1cb/1 +CCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2334_2823_1:0:0_1:0:0_1cc/1 +ACCAACATAAAGATTATTGCCCGGCGTACGGGGAAGGACGTCAATAGTCACACAGTCCTTGACGGTATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_385_918_1:0:0_2:0:0_1cd/1 +AAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTACGCTCATTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3121_3630_2:0:0_0:0:0_1ce/1 +CTGAAGAGGCCGCCCCTAGTTTTGTTTCAGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_812_1266_2:1:0_3:0:0_1cf/1 +CCATCCTTCATGAACTTAATCGACTTTTCACCATAAACGTGACGATGAGGGACATAACAAGTAAAAATGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_272_635_1:0:0_1:0:0_1d0/1 +AATGACGGCAGCAATCAACTCAACAGGAGCAGGAAAGCGAGGGTATCCCACAAAGTCCAGCGTACCATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4737_5203_2:0:0_4:0:0_1d1/1 +CCTGAGAATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTGCTACAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4029_4475_1:0:0_1:0:0_1d2/1 +TTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGCGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4090_4621_1:0:0_3:0:0_1d3/1 +AATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTTGGAAGAGAATCTGTCTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4630_5196_3:0:0_2:0:0_1d4/1 +TTAAGCACTCCGTGGACAGATTTGTCATTGTGAGCATATTCATCCCGAAGTTGCGGCTCCTTCTGATTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3008_3541_1:0:0_0:0:0_1d5/1 +TTCTGTTGATAAGCAAGCATCTCATTTTGTGCATATACCTGGTCTTTCGTATTCTGGCGTGAAGTCGCCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1334_1804_0:0:0_2:0:0_1d6/1 +ACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4247_4753_1:0:0_0:0:0_1d7/1 +GCTGTACCATACTCAGGCACACAAAAATACTGATAGCAGTCGGCGTGTGAATCATTAGCCTTGCGACCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4624_5113_2:0:0_2:0:0_1d8/1 +CTAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGTGTCGCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1604_2110_1:0:0_1:0:0_1d9/1 +TGGGAAGCCTTCAAGAAGGTGATAAGCAGGAGAAACATACGAAGGCGCATAACTATACCACTGACCCTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3189_3705_0:0:0_0:0:0_1da/1 +ACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2571_3036_0:0:0_1:0:0_1db/1 +CATTCAGATGGATACATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2454_2885_1:1:0_0:0:0_1dc/1 +ACCTGATTCAGCGAAACCAATCCGCGGCATTTAGTAGCGGTAAAGTTAGACCAAACCATGAAACCAACAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2639_3200_1:0:0_1:0:0_1dd/1 +AGCCTGCAACGTACCTTCAAGAAGTCCTTTACCAGCTTTAGCCATAGCACCAGAAACAAAACTAGGTGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3024_3566_2:0:0_1:0:0_1de/1 +GGCAATCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCAAGGGTGATGCTGGTATTAAATCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3247_3815_1:0:0_2:0:0_1df/1 +AACCACACCAGAAGCAGCATCAGTGACGACATTAGAAATATCCTTTGCAGAAGCGCCAATAAGAGAAGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3223_3567_2:0:0_3:0:0_1e0/1 +AGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCAGATAAAGTAAAGGATACTCGTGATTATCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1692_2163_3:0:0_1:0:0_1e1/1 +CTGACAACCGTCCTTTACTTTTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTTATTGAACTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2788_3310_1:0:0_5:0:0_1e2/1 +TCATGAAATGCCTCAGCAAGATAATCACGAGTATCCTTTCCTTTATGAGCGGCAGACATGCCACCAAGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3894_4392_0:0:0_0:0:0_1e3/1 +TGCGGCAAAACTGCGTAACCGTCTTCTCGTTCTCTAAAAACCATTTTTCGTCCCCTTCGGGGCGGTGGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4515_5044_3:0:0_0:0:0_1e4/1 +TCCATATCTGACTTTTTGTTAACGTATTTAGCCACATAGAAACCAACAGCCATATAACTGGTAGCTTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4404_4767_2:0:0_4:0:0_1e5/1 +GAATACGGCCATTAGCTGTACCATACTCAGGGACACAAAAATACTGATCGCAGTCTGCGTGTGAATCATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_225_637_0:0:0_1:0:0_1e6/1 +GCAATGACGGCAGCAATAAACTCAACAGGAGCAGGAAAGCGAGGGTATCCCAGAAAGTCCAGCGTACCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_543_956_2:0:0_3:0:0_1e7/1 +CGTCGCTGCGTTGAGGCTTTCGATTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1929_2438_3:0:0_0:0:0_1e8/1 +CTTATACCTATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTTAAAATTCTATGAAGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_492_987_1:0:0_1:0:0_1e9/1 +GATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACGGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3808_4333_2:0:0_1:0:0_1ea/1 +GGGCGGTGGTCTATAGTGTTATTAATATCACGTTGGGGGAGCACATTGTAGCATTGTGCCAATTCATCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2304_2701_0:0:0_1:0:0_1eb/1 +TTATAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2008_2481_4:0:0_1:0:0_1ec/1 +TTCTGGTGATTCGTCTAAGAAGTTTCAGATTGCTGAGGGTCAGAGGTATCGTTATGCGCCTTGGTATGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3419_3973_2:0:0_0:0:0_1ed/1 +AGAGATTGCCGAGATTCAAAATGAGAGTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_383_987_3:0:0_1:0:0_1ee/1 +GTAAGGGGCCGAAGCCCCTGCAATTAAAATTGTTGACCACCTACAAACCAAAGACGAGCGCCTTTACGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1054_1487_0:0:0_2:0:0_1ef/1 +AACGGAAACGATAACGAGCATCATCTTGATTAAGCTCATTAGGGTTAGCCTCGGTACGTTCAGGCATCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4040_4592_2:0:0_0:0:0_1f0/1 +CGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCAATTCTACTCTTTCTCACTCCCCAATGCTTGGCTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2907_3500_0:0:0_0:0:0_1f1/1 +GTCTTTCGTATTCTGGCGTGAAGTCGCCGACTGAATGCCAGCAATCTCTTTTTGAGTCTCATTTTGCATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2716_3207_1:0:0_1:0:0_1f2/1 +AAGTGCCAGCCTGCAACGTACCTTCAAGAAGTCCTTTACCAGCTTTAGCCATAGCACCAGAAACAAAACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3328_3788_1:0:0_1:0:0_1f3/1 +GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hisat_input_2_reverse.fastq Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,2000 @@ +@phiX174_4023_4544_0:0:0_0:0:0_0/2 +CATTGCATTCATCAAACGCTGAATAGTAAAGCCTCTACGCGATTTCATAGTGGAGGCCTCCAGCAATCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_927_1458_2:0:0_2:0:0_1/2 +GCGCTCGTCTTTGGTATGTATGTGGTCCACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2195_2674_0:0:0_4:0:0_2/2 +CAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4438_4887_3:0:0_0:0:0_3/2 +AACCATAAGGCCACGTATTTTGCAAGCTATTTAACTGGCGGCGATTGCGTACCCGACGACCAAAATTAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4418_4896_1:0:0_1:0:0_4/2 +GCATACTGTAACCATCAGGCCACGTATTTTGCAAGCTATTTAACTGGCGGCGATTGCGTACCCGACGACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1459_1934_0:0:0_1:0:0_5/2 +TATAAGTCAAAGCACCTTTAGCGTTAAGGTACTGAATCTCTTTATTCGCAGTAGGCGGAAAACGAACAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2580_3121_1:0:0_1:0:0_6/2 +GGGTTAGGAACATTAGAGCCTTGAATGGCAGATTTAATCCCAGCATCACCCATGCCTACAGTATTGTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_268_822_1:0:0_2:0:0_7/2 +AAGGACTGGTTTAGATATGAGTCACATTTAGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4373_4951_0:0:0_2:0:0_8/2 +GGCCACAACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTATCTAACTGCGATGGGCATACTGTAACCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4817_5237_1:0:0_1:0:0_9/2 +CCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCATGCAAAATACGTGGCCTTATGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_498_1078_5:0:0_0:0:0_a/2 +ACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCTCGGCGCCAGTTTGAATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4746_5200_3:0:0_0:0:0_b/2 +TGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCATTTTATGCGGACAGTTCCTACAGGTAGCGTAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4746_5155_3:0:0_0:0:0_c/2 +GGTACCGCTAATGGCCGTCTTCATTTCCATGGTGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2025_2501_0:0:0_0:1:0_d/2 +TTAGGTGTCTGTAAAACAGGTGCCGAAGAAGCTGGAGTTACAGAAGTGAGAACCAGCTTATCAGAAAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2574_3097_1:0:0_2:0:0_e/2 +TCAGATGGATACATCAGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1432_1904_0:0:0_0:0:0_f/2 +ACTGAATCTCTTTAGTCGCAGTAGGCGGAAAACGAACAAGCGCAAGAGTAAACATAGTGCCATGCTCAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_79_485_2:0:0_2:0:0_10/2 +AGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCAGGCGGACAATGAGAAAATTCGACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_696_1131_1:0:0_0:0:0_11/2 +TTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGACTTGTTCGCGTTTACCTTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1085_1572_3:0:0_1:0:0_12/2 +ATAGATGTGGTAGAAGTGGTCATTTGGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTCCAAATGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2384_2869_1:0:0_2:0:0_13/2 +CCAATGCGCGGCATTTAGTAGCGGTCAAGTTAGACCAAACCATGAAACCAACATAAACATTATTGCCCGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_794_1377_1:1:0_1:0:0_14/2 +TACTGACGCAGAAGAAAACGTGCGTCAAACTTTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1015_1593_1:0:0_2:0:0_15/2 +GCTTGCCGACCCATAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCTCCGTCTCAGGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_182_623_0:0:0_1:0:0_16/2 +CGACCTTTCGCCATCAACTAACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_996_1455_1:0:0_1:0:0_17/2 +AAATTATGTCTAAAATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_277_813_0:0:0_1:0:0_18/2 +TTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1822_2393_2:0:0_0:0:0_19/2 +GCGTTTCTTTGTTCCTGAGCAAGGCACTATGTTAACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1839_2382_1:0:0_1:0:0_1a/2 +AGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGAACCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1140_1596_3:0:0_3:0:0_1b/2 +ATGGCGGTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACACTACTGTAGACATTTTTACTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1449_1972_1:0:0_1:0:0_1c/2 +ATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGAGTGCTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_99_645_0:0:0_2:0:0_1d/2 +TACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_17_543_2:0:0_2:0:0_1e/2 +ATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAACTTATCTTGAAAAAGCAGGAATTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4185_4721_0:1:0_1:0:0_1f/2 +ATAGCAGTCGGCGTGTGAATCATTAGCCTTGCGACCCTCGGCAGCAAGAAGCATACGACCAATATCACGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3543_4018_1:0:0_2:0:0_20/2 +TCAGCGTGACATTCAGAAGGGTAATAAGAACGAACCATAACAAAGCCTCGAAGATTTGGAGGCATGAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1664_2152_4:0:0_2:0:0_21/2 +TACGCGTTCTTGGAAATCACGAGAAGGCGGTTCCTGAATGAATGGGAAGCCTTCAAGAAGGTGATAAGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3435_3911_1:0:0_0:0:0_22/2 +CCTAGACAAATTAGAGCCAATACCATCAGCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2738_3250_0:0:0_3:0:0_23/2 +GCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_772_1314_2:0:0_2:0:0_24/2 +TCAATATAACCAGTAGTGTTAACAGTCGGGAGCGGAGAGGCATTAACACCATCCTTCATGAACTTAATCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4676_5213_0:0:0_1:0:0_25/2 +CAGCTTGGTAAGTTGGATTAAGCAGTCCGTGGACAGATTTGTCATTGTGAGCATTTTCATCCCGAAGTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3271_3795_1:0:0_2:0:0_26/2 +CAGTGACGACATTAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAGAGCCATACCGGAGATTCTGCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3137_3611_0:0:0_1:0:0_27/2 +TAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3971_4458_1:0:0_0:0:0_28/2 +AGGCTTTTTTATGGTTCGTTCTTATAACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2307_2855_1:0:0_1:0:0_29/2 +TTAGTATCGGTAAAGTTAGACCAAACCATGAAACCAACATAAACATTATTGCCCGGCGTACGGGGAAGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_568_1192_1:0:0_0:0:0_2a/2 +ATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCGTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3607_4112_0:0:0_2:0:0_2b/2 +CCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2296_2767_1:0:0_0:0:0_2c/2 +GTGTGAGGTTCTAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1636_2263_0:0:0_1:0:0_2d/2 +GGGAGTGGTCGGCAGATTGCGATAAACGGTCACATTAAATTTAACCTGACTATTCCACTGCAACAACTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3319_3790_0:0:0_2:0:0_2e/2 +CTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1043_1520_4:0:0_1:0:0_2f/2 +CTTTCCCATCTTGGCTTCCTTGCTGTACAGCTTGGTCGTCTTATTACCATTTCAACTACACCGGTTATCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4595_5067_1:0:0_1:0:0_30/2 +CTCCTAGACCTTTAGCAGCAAGGTCCATATCTGACTTTTTGTTAACGTATTTAGCCACATCGAAACCAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_787_1273_0:1:0_3:0:0_31/2 +ACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAATTTACGTGCAGAAGGAGTGATGTAATGTCTAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2530_2954_5:0:0_2:0:0_32/2 +ACCGCCAGCAATAGCACCAAACATAAATCACCTCACTTAAGTGGCTTGAGACAAATAATGTCTTTAATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4131_4623_2:0:0_2:0:0_33/2 +ATCAAGCTCTTGGAAGAGATTGTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1097_1538_1:0:0_1:0:0_34/2 +ACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCCTTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1220_1777_2:0:0_0:0:0_35/2 +GCCTAACGACGTTTGGTCAGTTCCATCAACATCATAGCCAGATGCCCAGAGATTAGAGCGCATGACAAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1116_1546_1:0:0_3:0:0_36/2 +GCTACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1266_1732_2:0:0_1:0:0_37/2 +CCAGAGATTAGCGCGCATGACAAGTAAAGGACGGTTGTCAGCGTCATAAGAGGTTTTACCTCCAAATGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2757_3237_1:0:0_1:0:0_38/2 +CCAAATCAAGCAACTTATCAGAAACGGCAGAAGTGCCAGCCTGCAACGTAGCTTCAAGAAGTCCTTTACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3501_3920_1:0:0_0:0:0_39/2 +CGGTTATTTCCTAGACAAATTAGAGCCAATACCATCAGCTTTACCGTCTTTCCAGAAATTGTTCCAAGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_30_492_1:0:0_2:0:0_3a/2 +TAACACTTTCGGAAATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2753_3287_0:0:0_1:0:0_3b/2 +ATCACGAGTATCCTTTCCTTTATCAGCGGCAGACTTTCCACCAAGTCCAACCAAATCAAGCAACTTATCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3381_3868_2:0:0_1:0:0_3c/2 +CAAAAAGAGCTTACTAAAATGCAACTGGACAATGAGAAAGAGATTGCCGAGATGCAAAATGAGACTCACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3151_3605_1:0:0_2:0:0_3d/2 +AACCTGCTGTAGCTTGGAAAGATTGGTGTTTTCCCTAATAGACGCAACGCGAGCAGTAGACTCCTTCTGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1639_2047_1:0:0_1:0:0_3e/2 +ACCCTCAGCAATCTTAAACTTCTTAGACGAATCACCAGAACGGCAAACATCCTTCATAGAAATTTCACGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_925_1373_0:0:0_1:0:0_3f/2 +AGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3106_3747_2:0:0_0:0:0_40/2 +CTACTGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCAAAAGCTGGTAAAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2717_3213_1:0:0_0:0:0_41/2 +CGGCAGAAGTGCCAGCCTGCAACGTACCTTCAAGAAGTCCTTTACCAGCTTTAGCCATAGCACCAGAAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4734_5225_0:0:0_2:0:0_42/2 +CGCGTCGTAACCCAGCTTGGTCAGTTGGATTAAGCACTCCGTGGACAGATTAGTCATTGTGAGCATTTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_435_938_2:0:0_2:0:0_43/2 +GCCTCTATTAAGCTCATTCAGGCTTCTGGCGTTTTGGATTTAACCGAAGATGATTTCGCTTTTCTGACGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2230_2750_1:0:0_1:0:0_44/2 +TGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGCTTGAGTGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2857_3359_2:0:0_4:0:0_45/2 +TGCCGCGGATTGTTTTCGCTGAATCAGGTTATTAAAGAGATTATATGTCTCCAGCCACTTAAGTGAGGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3261_3790_1:0:0_1:0:0_46/2 +GCTGAAAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3627_4066_1:0:0_2:0:0_47/2 +CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAAGACCAAATCAAAGAAATGACTCGCAAGGTTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2501_2976_3:0:0_1:0:0_48/2 +AAGCTACATCGTCAACGTTCTATTTTGATAGTTTGCCGGTTAATGCTGGTAATGGTGGTTTTCATCATTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1065_1576_3:0:0_0:0:0_49/2 +CTGGTCAGATTGGTGGACTTATTACCATTTCAACTACTCCGGTTATCGCTGTCGACTCCTTCGAGATGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1080_1550_0:0:0_0:0:0_4a/2 +TTTGGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTCCAAATGTTTTTGAGATGGCAGCAACGGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1822_2280_3:0:0_0:0:0_4b/2 +GAAGTCATGATTGAATCGCGAGTGGTCGGCAGATTGCGATAAACGGTCACATTAAATTTAACCTGACTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1170_1634_1:0:0_0:0:0_4c/2 +GTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTAATGGTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2237_2837_2:0:0_2:0:0_4d/2 +GACCAAACCATGAAACCACCATAAACATTATTGCGCGGCGTACGGGGAAGGACGTCAATAGTCACACAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2745_3240_3:0:0_1:0:0_4e/2 +TGGTGGTTAATAAACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCTGGCAATAATGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1141_1597_0:0:0_2:0:0_4f/2 +AGCAGCTTGCAGACCCATAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCGCGAAAGCACAGTCTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4456_4963_0:0:0_1:0:0_50/2 +GTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3482_4043_0:0:0_0:0:0_51/2 +ACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2303_2790_1:0:0_0:0:0_52/2 +GTTATAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAATCGAAGCGCGGTAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1662_2049_1:0:0_1:0:0_53/2 +TGACCCTCAGCAATCTTAAACTTCTTAGACGAATCACCAGAACGGAAAACATCCTTCAAAGAAATTTCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4311_4753_2:0:0_2:0:0_54/2 +GCTGTACCATAGTCAGGCACACAAAAATACTTATAGCAGTCGGCGTGTGAATCATTAGCCTTGCGACCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1415_2014_1:0:0_2:0:0_55/2 +CCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGGTCGTTATGGTTTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4647_5144_1:0:0_2:0:0_56/2 +GCGGCTCATTCTGATTCTGAACCGCTTCTTGGGAAGAAGCGACAGCTTGGTTTTTAGTGAGTTGTTCCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2230_2730_1:0:0_1:0:0_57/2 +TGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCCATCATGACTTCGTGATAAAAGATTGAGTGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3424_3922_2:0:0_2:0:0_58/2 +GACGGTTATTTCCTAGACAAATTAGAGCCAATACCATCAGCTTTACCTTCTTTCCAGCAATTGTTCCAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1838_2329_0:0:0_1:0:0_59/2 +GAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1728_2221_1:0:0_1:0:0_5a/2 +AACCTGACTATTCCACTGCAACAAGTGAACGGACTGGAAACACTGGTCATAATCATGGTGGCGAATAAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4544_5065_0:0:0_0:0:0_5b/2 +GCGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1104_1583_0:0:0_0:0:0_5c/2 +CGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3724_4250_1:0:0_1:1:0_5d/2 +AACAGATACAAACTAATCACGAACGTCAGAAGCAGCCTTATGGCCGTCAACATACCTATCACCATTATCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3060_3631_2:0:0_3:0:0_5e/2 +ACTGAAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCGTAACCCTGATGAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4390_4869_3:0:0_3:0:0_5f/2 +TTTGCAAGGTATTTAACTGGCGGCGATTGCGTACCGGACGAGCAAAATTAGGGTCAACGCTACCTGTAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1103_1655_2:0:0_1:0:0_60/2 +CATCACGGTAAGGCTGCATGAAGTAATCACGTTCTTGGTCAGTATGCAAATTAGCATAAGCAGCTTGCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4367_4818_0:0:0_2:0:0_61/2 +GGTCAAGGCTACCTGTAGGAAGAGTCCGCATAAAATGCACCGCATGGAAATGAAGACGGCCATTAGCTGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3356_3831_1:0:0_0:0:0_62/2 +TATGGTTGACGCCGGATTTGAGAATCAAAAAGATCTTACTAAAATGCAACTGGACAATCAGAAAGAGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4839_5348_0:0:0_1:0:1_63/2 +CGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_460_981_0:0:0_3:0:0_64/2 +GGCCGACGCCCCTGCAATTAAAATTGTTGACCACCTACATACCAAAGACGAGCGCCTATACGCTTGCGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2474_3007_1:0:0_0:0:0_65/2 +CTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTATATTTTTATAGTTTGACGGTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1318_1862_0:0:0_1:0:0_66/2 +CAAGAGTAAACATAGTGCCATGCTCAGGAACAAAGAAACGCGGCCCAGAATGTTTATAGGTCTGTTGAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4777_5207_1:0:0_0:0:0_67/2 +GGTAAGTTGGATTAAGCACTCCGTGGACAGATTTGTCATTGTGAGCATTTTCATCCCGAAGTTGCGGCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3446_3931_3:0:0_0:0:0_68/2 +TCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCCTAATACGAAAGACGAGGTATATGCACAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1556_2009_1:0:0_1:0:0_69/2 +AACGGAAAACATCCTTCATAGAAATTTCACGCGGCGGCAAGTAGCCATACAAAACAGGGTCGCCAGCAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4643_5097_0:0:0_1:0:0_6a/2 +TGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3838_4331_1:0:0_0:0:0_6b/2 +AAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTCTTGGCTCTAATTTGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2461_2906_2:0:0_2:0:0_6c/2 +GTTACTCCCGCTTCTTGGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTATATTTTGATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2096_2616_0:0:0_0:0:0_6d/2 +AGAAACAACCTGATTAGCGGCGTTGACAGATGTATCCATCTGAATGCAATGAAGAAAACCACCATTACCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1033_1590_0:0:0_2:0:0_6e/2 +TGCAGACCCATAATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCGAGCAAGCTCAGTCTCAGTAGGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3855_4385_1:0:0_0:0:0_6f/2 +AAACTGCGTAACCGTCTTCTCGTTCTCTAAAAACCATTTTTCGTCCCCTTCGGGGCGGTGGTCTATAGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4631_5084_1:0:0_3:0:0_70/2 +GTTGTTCCATTCTTTAGCTCCTAGACCTTTAGCAGCCAGGTCCATATCTGACTTATTGTAAACGTATTTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1557_2041_1:0:0_2:0:0_71/2 +AGCCATCTTAAACTTCTAAGACGAATCACCAGAACGGAAAACATCCTTCATAGAAATTTCACGCGGCGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_332_792_3:0:0_3:0:0_72/2 +AAGATCGTGGATTACTATCTGAGTCCGATGCTGTTCAACCACTCATAGGTAAGAAATCATGAGACAAGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4411_4951_2:0:0_2:0:0_73/2 +GGCGACAACCAACCAGAACGTGAAAAAGGGTCCTGCGTGTAGCGAACTGCGATGGGCATACTGTAACCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1971_2492_1:0:0_4:0:0_74/2 +TGTAAAACAGGAGCCTAAGAAGCAGGCGTAACAGAAGTGAGAACCAGCTTATCAGAAAAAAAGTTTGAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_544_971_1:0:0_2:0:0_75/2 +CCTGCAATTAAAATTGTTGACCACCTACATACCAAAGACGAGCTCGTTTACGCTTGCCTTTAGTACCTCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2065_2660_3:0:0_1:0:0_76/2 +GCCTTCGTATGTTTCACCTGCTTATCACCTTCTTGAAGGCTTGCCATTCATTCAGGAACCGCCTTCAGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4843_5331_1:0:0_1:0:0_77/2 +ATCGCCGGCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2685_3146_1:0:0_0:0:0_78/2 +AACAAAACTAGGGGCGGCCTCATCAGGGTTAGGAACATTAGAGCCTTGAATGGCAGATTTAATACCAGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_21_568_3:0:0_0:0:0_79/2 +CGCAGAAGTTAACACTTTCGGATATTTGTGATGAGTCGAAAAATTATCTTGATAAAGGAGGCATTACTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3074_3602_0:0:0_1:0:0_7a/2 +CTGCTGTTGCTTGGAAAGATTGGTGTTTTCCATAATAGACGCAACGGGAGCAGTAGACTCCTTCTGTTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1293_1770_0:0:0_3:0:0_7b/2 +GACGATTGGTCAGTTCCATCAACATCATAGCCAGATGCCCAGAGATTAGAGCGCATGACACGTCAAGGAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2090_2638_0:0:0_0:0:0_7c/2 +CAAAAGCAATATCAGCACCAACAGAAACAACCTGATTAGCGGCGTTGACAGATGTATCCATCTGAATGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4261_4732_0:0:0_2:0:0_7d/2 +TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2873_3466_0:0:0_0:0:0_7e/2 +ATGCCAGCAATCTCTTTTTGAGTCTCATTTTGCATCTCGGCAATCTCTTTCTGATTGTCCAGTTGCATTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1064_1508_0:0:0_4:0:0_7f/2 +GCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2891_3381_1:0:0_1:0:0_80/2 +GATTCTCAAATCCGGCGTCAACCATACCAGCAGAGGAAGCATCAGCACCAGCACGCTCCCAAGCATTCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4488_4971_0:0:0_2:0:0_81/2 +GCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2743_3227_0:0:0_0:0:0_82/2 +CAACTTATCAGAAACGGCAGAAGTGCCAGCCTGCAACGTACCTTCAAGAAGTCCTTTACCAGCTTTAGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3967_4438_0:0:0_1:0:0_83/2 +TTGGAGGCTTTTTTATGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1870_2375_0:0:0_2:0:0_84/2 +AAACCTACCGCGCTTCGCTTGGACAACCCCTCAGCGGCAAAAATTAAAATATTTACCGCTTCGGCGTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1341_1859_1:0:0_2:0:0_85/2 +ACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTCTAACAACTATTTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_468_969_2:0:0_3:0:0_86/2 +TGCAATTAAAATTGTTGACCACCTACATACCAAAGACGAGCGCCTTTACGCTTGCCTTTATTAGCTGGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_619_1102_0:0:0_0:0:0_87/2 +AGTAGTTGAAATGGTAATAAGACGACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4468_5007_1:0:0_3:0:0_88/2 +AGTGTTCAAGCTTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_354_848_1:0:0_3:0:0_89/2 +GTCCGCTGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1973_2503_1:0:0_1:1:0_8a/2 +CCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGCTTGCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1674_2081_2:0:0_1:0:0_8b/2 +GAGAAACATACGAAGGCGCATAACGATACCACTGACCCTCAGCAATCTTAAACTTGTTAGACGAATCACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_684_1239_1:0:0_0:0:0_8c/2 +TCACCATAAACGTGACGATGAGGGACATAAAAAGTAAAAATGTCTACAGTAGAGTCAATAGCAAGGCCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4240_4711_1:0:0_1:0:0_8d/2 +TTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCCCAATGCTACAATGTGCTCCCCCAACTTGATAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2991_3536_3:0:0_1:0:0_8e/2 +TTGTTTGGAGGCGGTCAAACAGCCGCCTCCGGTGGCATTCAATGTGCTGTGCTTGCTACCGATAACAATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3052_3562_0:0:0_1:0:0_8f/2 +ATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3846_4285_4:0:0_2:1:0_90/2 +TAGCATTTTGCCCATTCATCCATTAACTTCTCAGTAACAGATACAAACTAATCACGAACGTCAGAAGCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2675_3179_1:0:0_0:0:0_91/2 +TTGAGTCTTCTTCGGTTCCGACTACCCTCCCGAGTGCCTATGATGTTTATCCTTTGAATGGTCGCCATGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2468_2921_1:0:0_1:0:0_92/2 +CAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCCACGTTATATTTTGATAGTTTGAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_462_964_1:0:0_1:0:0_93/2 +GCCGTTTTGGATTTACCCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2392_2881_1:0:0_1:0:0_94/2 +GATTCAGCGAAACCAATCCGCGGCATTTAGAAGCGGTAAAGTTAGACCAAACCATGAAACCAACATAAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1015_1473_0:0:0_0:0:0_95/2 +AACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4874_5385_0:0:0_0:0:0_96/2 +GTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3405_3927_1:0:0_1:0:0_97/2 +ATCCTGACGGTTATTTCCTAGACAAATTAGAGCCAATACCATCAGCTTTACCGTCTTTCCAGAAATTGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2441_2902_2:1:0_1:0:0_98/2 +AAATAATCTCTTTAATAACCTGATTCAGCGAAACCAATCCGCGGCATTTAGTAGCGGAAAAGTTAGACCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_750_1259_1:0:0_1:0:0_99/2 +TCATGAACTTAATCCACTGTTCACCATAAACGTGACGATGAGGGACATAAAAAGTAAAACTGTCTACAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2633_3161_2:0:0_3:0:0_9a/2 +CTTTTGATGCGGACCCTAAATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACAACCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3304_3817_0:0:0_1:0:0_9b/2 +TCAACCACACCAGAAGCAGCATCAGTGACGACATTAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3934_4328_1:0:0_1:0:0_9c/2 +CCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGGTTTTTTATGGTTCGTTCTTATTACCCTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_858_1332_1:0:0_4:0:0_9d/2 +CCAAGAAAAGCGGCATGGTCAATATAACCCGTCGTGTTAACAGACGGGAGAGGAGTGGCAATAACACCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2833_3368_1:0:0_1:0:0_9e/2 +GGCGTCAACCATACCAGCAGAGGAAGCATCATCACCAGCACGCTCCCAAGCATTAAGCTCAGGAAATGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1923_2395_1:0:0_0:0:0_9f/2 +CTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCCACTTGCCGCCGCGTGAAATTTCTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1651_2127_2:0:0_1:0:0_a0/2 +TGATGATATTTCTTCATTTGGAGGTCAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3373_3856_1:0:0_1:0:0_a1/2 +CAAGTATCGGCAACAGCTTAATCAATACCATGAAAAATATCAACCACACCAGAAGCAGCATCAGTGACGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_263_758_1:0:0_1:0:0_a2/2 +AAACGCGAACAATTCCGCGGCTTTAACCGGACGCTCGACGCCATTAATAATGTTTTCCGTAAATTCAGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3981_4496_2:0:0_1:0:0_a3/2 +AGTGGAGGCCTCCAGCAATCTTGAACACTCATCCTTAATACCATTCTTTTTGGGGTAATTATACTCATCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_728_1231_3:0:0_0:0:0_a4/2 +TCCGGTTAAAGCCGCAGCATTGTTCGCGTTTACCTTGCGAGTACGCGCAGGAAACACTGACGTTCTTACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3523_4034_2:0:0_2:0:0_a5/2 +CTCAAAGTCAAAATAATCAGCGTTACATTCAGAAGGGTCATAAGAACGAACCATAAAAAAGCCTCCAAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4079_4503_2:0:0_3:0:0_a6/2 +ATTTCATAGTGGAGGCCTCCAGCAATCATGAACCCTCATCCTTAATACCTTTCTTTTTGGGGAAATTATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_562_1069_2:0:0_1:0:0_a7/2 +ACCCGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCTCGGCGCCAGTTTGAATATTAGACATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2942_3462_0:0:0_1:0:0_a8/2 +TATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2320_2820_1:0:0_3:0:0_a9/2 +GTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTAAGGAGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2745_3285_1:0:0_2:0:0_aa/2 +CACGAGTATCCTTTCCTTTATCAGCGGCAGACTTGCCAGCAAGTCCAACCAAATCAAGCAAGTTATCAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4824_5276_2:0:0_1:0:0_ab/2 +CAATCTCATCTCTCTTTTTGCGTTCTGCTTCAATATCTGGTTGAACGGCGTCGCGTCTTAACCCAGCTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3329_3814_0:0:0_1:0:0_ac/2 +TGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4200_4650_0:1:0_0:0:0_ad/2 +AATAGTCACGCAAAGCATTGGGATTATCATAAAACGCCTCTAATCGGTCGTCAGCCAACGTGAGAGTGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4138_4609_4:0:0_0:0:0_ae/2 +AATCGGTCGTCAGCCAACGTGAGAGTGTCAAAAACGATAAACCAACCATCAGCATGAGCCTGTCGCATTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3169_3682_3:0:0_0:0:0_af/2 +ATTTCTTTGATTTGGTCATTGGTAAAATACTGACCAGCCGTTTGAGCTTGAGTAAGCATTTGGCGCATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_328_784_1:0:0_2:0:0_b0/2 +GTGTTTCCAGCGCGTACACGCAAGGTAAACGCGAACAATTCAGCGGCATTAACCGGACGCTCGACGCCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4769_5219_1:0:0_1:0:0_b1/2 +TTTCGATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1570_2095_2:0:0_3:0:0_b2/2 +TATTGACATTATGGGAGTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_261_824_0:0:0_1:1:0_b3/2 +GTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4563_4949_3:0:0_0:0:0_b4/2 +GGTTGGTTTATCGTTTTTGCGACTCTCACGTTGGCTGACGCCCGATTAGAGGCGTTTTATGATAATCCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1980_2534_2:0:0_2:0:0_b5/2 +AAACTATCAAAATATACCGTTGACGATGTAGCTTTAGGAGTCTGTAAAACAGGTGCCGAAGAAGCTGGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3168_3623_1:0:0_3:0:0_b6/2 +TTGGCGCATAAACTCGGAAACCTGCTGTTGCTTGGAAATATTTGTGTTTTCCATAATAGACGCAACGCGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2339_2763_1:0:0_1:0:0_b7/2 +CCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTAATCCTGTTTCAGACTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3863_4342_5:0:0_2:0:0_b8/2 +ATTCTTGAAAGACGGTAAAGCTGATGTTATTGGCTCTAATTTGTCTAGGAACTAACCGTCAGGCTTGACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1551_2176_2:0:0_0:0:0_b9/2 +GTCATAATCATGGTGGCGAATAAGTACGCGTTCTTGCAAATCACCAGAAGGCGGTTCCTGAATGAATGGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1215_1673_2:0:0_0:0:0_ba/2 +TCGCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCGTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_228_718_0:0:0_0:0:0_bb/2 +CCATTAATAATGTTTTCCGTAAATTCAGCGCCTTCCATGATGAGACAGGCCGTTTGAATGTTGACGGGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2551_3037_0:0:0_1:0:0_bc/2 +AATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1040_1532_2:0:0_0:0:0_bd/2 +GACCTTTCCGATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCGGGTTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1632_2185_1:0:0_2:0:0_be/2 +GAAACACTGGTCATAAACATGGTGGCGAATAAGTACGCGTTCTTGGAAATCACCAGAAGGCGGTTCCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3105_3690_1:0:0_0:0:0_bf/2 +TGCGAGTCATTTCTTTGATTTGGTCATTGGTAAAATACTGACCAGCCGTTTGAGCTTGAGTAAGCATTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_482_958_1:0:0_1:0:0_c0/2 +TTGTTGACCACCTACATACCAAAGACGAGCGCCTTTACGCTTGCCTTTAGTACCTCGCACCGGCTGCGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4295_4694_3:0:0_0:0:0_c1/2 +CTTGCGACCCTCGGCAGCAAGAACCATACGACCAATATCACGAAAATAGTCACGCAAAGCATTGGGATTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3158_3581_1:0:0_2:0:0_c2/2 +GGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTACTGCCGTTTCTGATAAGTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3443_3980_1:0:0_1:0:0_c3/2 +GACTCAAAAAGAGATTGCTGGGATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3949_4379_2:0:0_2:0:0_c4/2 +TTTACATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTTCTTATTACCCTTCAGAATGTCACGCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3648_4160_0:0:0_2:0:0_c5/2 +GGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1602_2103_0:0:0_0:0:0_c6/2 +CCTTCAAGAAGGTGATAAGCAGGAGAAACATACGAAGGCGCATAACGATACCACTGACCCTCAGCAATCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3882_4411_4:0:0_3:0:0_c7/2 +GGGCGTTCAGCAGCCAGCTTGCGGCAAAACTGCGTAACCGTCTTCTCGTTGTCTACAAACCATTTTACGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2868_3414_2:0:0_1:0:0_c8/2 +GATTGTCCAGTTGCATTTTAGTAAGCTCTTTTTTATTCTCAAATCCGGCGTCAACCATACCAGCAGAGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1114_1605_0:0:0_1:0:0_c9/2 +TGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2919_3389_1:0:0_0:0:0_ca/2 +CTCTTTTTGATTCTCAAATCCGGCGTCAACCATACCAGCAGAGGAAGCATCAGCACCAGCACGCTCCCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2064_2531_2:0:0_2:0:0_cb/2 +CTATCAAAAAATAACGTTGACGATGTAGCTTTAGGTGTCTGTAAAACAGGTGCCGAAGAAGCTTGAGTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4000_4497_3:0:0_0:0:0_cc/2 +CTTCAGAATGTCACGCTGATTATTTTGCCTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4743_5249_3:0:0_1:0:0_cd/2 +TATGGTAGAGCTAATGGCCGTCTTCATTTCCATGCGGTGCATTATATGCGGACAGTTCCTACAGGTAGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1935_2414_2:0:0_3:0:0_ce/2 +GAAATAAAAGTCTGACACATGATTAAACTCCTAAGCAGAAAACCTAGCGCGCTTCGCTTGGTGAACCCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_408_1018_1:0:0_1:0:0_cf/2 +CCATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2229_2741_1:0:0_0:0:0_d0/2 +ATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGCTTCAATCATGACTTCGTGATAAAAGATTGAGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1826_2374_2:0:0_0:0:0_d1/2 +AACCTACCGCGCTTCGCTTGGTCAACCCCTCAGCGGCAAAAATTAAAATTTTTACCGCTTCGGCGTTATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3451_3890_2:0:0_1:0:0_d2/2 +AAGAGATAGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCATGTATATGCACAAAATGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4699_5194_0:0:0_2:0:0_d3/2 +ATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1091_1593_1:0:0_1:0:0_d4/2 +GCTTGCAGACCCATAATGTCAATAGATGTGGTCGAAGTCGTCATTTGGCGAGAAAGCTCAGTCTCAGGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_150_647_3:0:0_0:0:0_d5/2 +AACATAATAAGCAATGACGGCAGCAATAAACTCAACAGGAGCAGGAAAGCGAGGGTATCCCACAAAGTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1864_2257_2:0:0_1:0:0_d6/2 +GCATGTTCGTTTTCCGCCTACTGCGACAAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4644_5182_0:0:0_1:0:0_d7/2 +GACAGATTTGTCATTGTGAGCATTTTCATCCCGAAGTTGCGGCTCATTCTGATACTGAACAGCTTCTTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4693_5191_0:0:0_3:0:0_d8/2 +CACTCCGTGGAGAGATTTGTCATTGTGAGCATTTTCATGCCGAAGTTGCGGCTCATTCTGAATCTGAACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3586_4112_2:0:0_0:0:0_d9/2 +ATGGAAGCCAAGCATTGGGGATTGAGAAAGAGTAGAAATGCCACAAGCCTCAATAGCAGGTTTAAGAGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2392_2930_1:0:0_0:0:0_da/2 +ATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGCTAAGCTGGTTCTCACTTCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2478_3008_4:0:0_1:0:0_db/2 +TTGACCGCCTCCAAACAATTTAGACATGGCGCCACCAGCCAGAGCAGAAGCAATACCGCCAGCAATAGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1544_2075_0:0:0_1:0:0_dc/2 +CATACGAAGGCTCATAACGATACCACTGACCCTCAGCAATCTTAAACTTCTTAGACGAATCACCAGAACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3280_3806_0:0:0_0:0:0_dd/2 +AGAAGCAGCATCAGTGACGACATTAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAGAGCCATACCGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1144_1599_0:0:0_1:0:0_de/2 +CGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1403_1962_1:0:0_1:0:0_df/2 +TATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCAAACCCTAATGAGCTTAATCAAGATGATGCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_611_1095_1:0:0_2:0:0_e0/2 +TGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAAGGGCCTGTCTCATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2647_3113_2:0:0_0:0:0_e1/2 +AACATTAGAGCCTTGAATGGCAGATTTAATACCAGCATCACCCATGCCTACAGTATTGTTATCGGTAGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4243_4709_0:0:0_2:0:0_e2/2 +TATCTGTTACTGAGAAGTTAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_886_1364_1:0:0_4:0:0_e3/2 +TCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTAGGTATGTAGGTGGTCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2736_3284_0:0:0_2:0:0_e4/2 +ACGAGTATCCTTTCCTTTATCAGCGGCAGACTAGCGACCAAGTCCAACCAAATCAAGCAACTTATCAGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3296_3778_0:0:0_3:0:0_e5/2 +ATATCCTTTGGAGTAGCTCCAATATGAGAAGCGCCATACCGCTGATTCTGCGTTTGCTGATGAACTAAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4409_4865_1:0:0_2:0:0_e6/2 +CCCTCTTAAGGATATTCGCGATGAGTATACTTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3061_3557_2:0:0_0:0:0_e7/2 +GCGAGCAGTAGACTCCTTCTGTTGATAAGCAAGCATCTCATTTTGTGCATATACCTGGTCTTTCGTATTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_172_742_2:0:0_1:0:0_e8/2 +TCTTACTTTGCGACCTTTCGCCATCAACTCCCGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1836_2213_0:0:0_2:0:0_e9/2 +AATTCCACTGCAACAACTGAACGGACTGGAAACACTGGTCATAATCATGGTGGCGAATAAGTACGGGTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_628_1078_2:0:0_0:0:0_ea/2 +CCGTCATTGCTTATTATGTTGATCCCGTCAACATTCAAACGGCCTGTCTCATCAAGGAAGGCGCTGAATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1523_2053_2:0:0_1:0:0_eb/2 +CGTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3051_3557_0:0:0_1:0:0_ec/2 +GCGAGCAGTAGACTCCTTCTGTAGATAAGCAAGCATCTCATTTTGTGCATATACCTGGTCTTTCGTATTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3442_3894_1:0:0_2:0:0_ed/2 +CAATACCATCCGCTTTACCGTCTTTCCAGAAATTTTTCCAAGTATCGGCAACAGCTTTATCAATACCATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_554_1043_0:0:0_1:0:0_ee/2 +GGTCAAGCGGCATACGCTCGGCGCCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_525_1086_4:0:0_2:0:0_ef/2 +ACTGACCGGTCTCGTGCTCGTCGCTGCGAAGAGGCTTGCGTTTAAGGTACGCTGGACTTTGTGGGATACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_252_783_1:0:0_2:0:0_f0/2 +GCTTGGCACGTTCGTGAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1844_2328_3:0:0_4:0:0_f1/2 +GGCACTAAGTTTACTCTTGCGCTTGTTCGTTTTGCGCCTACTGCGACTAAAGAGATTCAGTACCTAAACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4728_5242_2:0:0_2:0:0_f2/2 +ATCTGGTTGAACGGCGTCGCGTCGTAACCCATGTTGGTAAGTTGGATTAAGCACTCCGTGGACAGATTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1380_1844_4:0:0_1:0:0_f3/2 +CATGCTCAGGAACAAAGAAACGCGGCACAGAATGTTTATAGGTCTGTTGAACACGACCAGAAAACTTGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1836_2418_2:0:0_0:0:0_f4/2 +GCGAGAAATAAAAGTCTGAAACATGATTAAACTCCTAAGCAGAAAACCTACCGCGCTTCGCTTGGTCAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3965_4512_3:0:0_3:0:0_f5/2 +TCTTGGAGGCTTTTTTATGGTTCGTTCTTATTCCCCTTCTGAAAGTCCCGCTGATTATTTTGACTTTGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2521_3106_0:0:0_2:0:0_f6/2 +TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3548_4026_4:0:0_2:0:0_f7/2 +CAAAATAATCAGCGTGACATTCAGAAGGTTAATAAGAACGAACCATAAAAAAGCCTCGAAGATTTGGAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3334_3882_0:0:0_4:0:0_f8/2 +CTATACCGTCTTTCCAGAAATTGTTCCCAGTATCGGCCACAGCTTTATCAATCCCATGAAAAATATCAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_532_1102_2:0:0_2:0:0_f9/2 +GGTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTTGACTTTGTGGGATACCCTCGCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4094_4577_0:0:0_1:0:0_fa/2 +AACGATAAACCAACCATCAGCATGAGCCTGTCGCATTGCATTCAACAAACGCTGAATAGTAAAGCCTCTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2618_3113_5:0:0_0:0:0_fb/2 +AACATTAGAGCCTTGAATGGCAGATTTAATACCAGCATCACCCATGCCTACAGTATTGTTATCGGTAGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_163_597_2:0:0_2:0:0_fc/2 +TCGAGAAGCTCTTACTTTGCGAGCTTTCGCCATCCACTAACGATTCTGTCAAAAACTGACGCGTTGGATG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4445_4909_0:0:0_1:0:0_fd/2 +CGAACTGCGATGGGCCTACTGTAACCATAAGGCCACGTATTTTGCAAGCTATTTAACTGGCGGCGATTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1822_2356_4:0:0_1:0:0_fe/2 +TGGTCAACCCCTCAGCGGCAAAAATTAAAATTTTTACCGCTTCGGCGTTATAACGTCACACTCAATCTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3709_4230_4:0:0_2:0:0_ff/2 +GAACGACAGAAGCAGCCTTATGGCCGTCAACATACATATCACCATAATCGAACTCAACGCCCTGCATACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1714_2209_0:0:0_3:0:0_100/2 +CATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3867_4376_3:0:0_2:0:0_101/2 +TGGAAAGACGGTAAAGCTGATGTTAATGGCTCTAATTTGTCTAGGAAATAACCGTCCGGATTGACACCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2460_3043_1:0:0_2:0:0_102/2 +AGCACATCACCTTGAATGCCACCGGAGGCGGCTTTTTGACCGCCTCCAAACAATTAAGACATGGCGCCCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3713_4206_2:0:0_2:0:0_103/2 +CGTCAACATACATCTCACCATTATCGAACTCAACGCCCTGCATACGAAAAGACAGAATCTCTTGCAAGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2721_3306_2:0:0_0:0:0_104/2 +TTATCCTTTGAATGTTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTTTGACTATTGACGTCCTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1018_1498_3:0:0_1:0:0_105/2 +TGGCGCCGAGCGTATGCCGCATGACCTTTCGCATCTTGGCTTCGTTGCTGGTCAGATTGGTCGTCTTATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1284_1710_2:0:0_0:0:0_106/2 +TCCCGACTGTTAAGACTACTGGTTATATTGACCATGCCGCTATTCTTGGCACGATTAACCCTGATACCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1033_1548_2:0:0_0:0:0_107/2 +GCCGCATGACCTTTCCCAACTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTAATACCATTTCAACTACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4831_5285_3:0:0_1:0:0_108/2 +TCCCAGCCTCAATCTCATCTCTCTTTTTGCGTTCTGCTTCAATATCTGGTAGAACGGCGTCGCGTCGTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2657_3087_1:0:0_3:0:0_109/2 +TTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTACCGACTACCCTCCCGACTGCCTATGATGTTTATCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1558_2049_1:0:0_2:0:0_10a/2 +TGACCCTCAGCAATCATAAACTTCTTAGACGAAACACCAGAACGGAAAACATCCTTCATAGAAATTTCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4270_4826_3:0:0_1:0:0_10b/2 +AAAATTATGGTCAACGCTACCTGTAGGAAGTGTCCGCATAAAATGCACCGCATGGAAATGAAGACGGCCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_245_746_4:0:0_0:0:0_10c/2 +TTAATATGCTAGGCACGATCGTCAAGGACTGGATTAGATATGAGTCACAATTTGTTCATGGTAGAGATTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1484_2067_3:0:0_4:0:0_10d/2 +GTCGCATAACGATACCACTTACCCTCAGCAATCTTAAACTTCTTATACGAAACACCAGAACGGAAAACAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4404_4883_0:0:0_2:0:0_10e/2 +GAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4167_4648_0:1:0_1:0:0_10f/2 +CAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3950_4508_1:0:0_2:0:0_110/2 +TTTCATGCCTCCAAATCTTGGAGTCTTTTTTATGGTTCGTTCTTATTACCCTTCTGAATGTCACGCTGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3867_4438_3:0:0_2:0:0_111/2 +TGGAAAGACGGTAAAGCTGATGGTATTGGGTGTAATTTGTCTAGGAAATAACCGACAGGATTGACACCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2104_2648_3:0:0_0:0:0_112/2 +CTTCCCATTCATTCAGGCACCGCCTTCTGGTGATTTGCACGAACGCGTACTTATTCGCCACCATGCTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2926_3403_1:0:0_2:0:0_113/2 +GATTTATGTTTGGTGCTATTGCTGGCGGAATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4629_5079_0:0:0_1:0:0_114/2 +TCCATTCTTTAGGTCCTAGACCTTTAGCAGCAAGGTCCATATCTGACTTTTTGTTAACGTATTTAGCCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3495_4038_0:0:0_0:0:0_115/2 +AAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2240_2752_2:0:0_1:0:0_116/2 +AACCACCATCATGGCGACCATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGTATTCGGAACCGAAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2863_3382_3:0:0_1:0:0_117/2 +TGATTCTCAAATCCGGCGTCCACCATACCAGCAGAGGAAGCATCAGCACCAGCACGCTCCCAAGCATTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2084_2609_0:0:0_1:0:0_118/2 +ACCTGATTAGCGGCGTTGCCAGATGTATCCATCTGAATGCAATGAAGAAAACCACCATTACCAGCATTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_777_1121_2:0:0_2:0:0_119/2 +AGTCGCCAGCGATAACCGGAGTAGTTGAAATGGTAAAAAGACGACCACTCTGACCAGCAAGGAAGCCAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2457_2911_2:0:0_0:0:0_11a/2 +GCTGGAGACAAATAATCTCTTTAATAACCTGATTCAGCGAAACCAATCCGCGGCATTTAGTAGCGGTAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4441_4959_1:0:0_2:0:0_11b/2 +GATCAACAGGCCACAAGCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGAACTGCGATGGGCATACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3215_3777_2:0:0_2:0:0_11c/2 +TATCCTTTGCAGTAGCGCCAATATGCGCAGAGCCATACCGCTGATTCTGCGTTTGCTGATGAACTAAGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2274_2778_2:0:0_1:0:0_11d/2 +TGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCCGAAGCGTTAAAAATTTTAATTTTTGCCTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2330_2871_4:0:0_1:0:0_11e/2 +TCATTTTTGGCGCTGAGTGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTACTCATGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1710_2259_0:0:0_0:0:0_11f/2 +GTGGTCGGCAGATTGCGATAAACGGTCACATTAAATTTAACCTGACTATTCCACTGCAACAACTGAACGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3034_3491_3:0:0_0:0:0_120/2 +GTGATGTGCTTGCTACCGATAACAATACTGTAGTCATGGGTGATTCTGGTATTAAATCTGCCCTTCAAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4164_4559_1:0:0_2:0:0_121/2 +AGCATGAGCCTGTCGCATTGCATTCATCAAACGCTGAATAGTAAAGCCTCTACGGGATTTGATAGTGGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4777_5231_1:0:0_5:0:0_122/2 +CGGTGCATTTTATGCGGACACTACCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_947_1501_1:0:0_4:0:0_123/2 +GGTGGTCAACAATTTTACTTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2267_2753_1:0:0_0:0:0_124/2 +TAACCACCATCATGGCGACCATTCAAAGGATAAACATCATAGGCAGTCGGGAGGGTAGTCGGAACCGAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4206_4670_0:0:0_1:0:0_125/2 +CATACGACCAATATCACGAAAATAGTCACGCAAAGCATTGGGATTATCATACAACGCCTCTAATCGGTCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4609_5049_0:0:0_2:0:0_126/2 +CAAGGTCCATATCTGAGTTTTTGTTAACGTATTAAGCCACATAGAAACCAACAGCCATATAACTGGTAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1650_2185_1:0:0_0:0:0_127/2 +GTGATGTTATTTCTTCATTTGGAGGTAAAACCACTTATGACGCTGACAACCGTCCTTTACTTGTCATGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2369_2816_0:0:0_3:0:0_128/2 +TACACATTATTGCCCGGCGTACTGGGAAGGACGTCAAAAGTCACACAGTCCTTGACGGTATAATAACCAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2788_3330_0:0:0_2:0:0_129/2 +CTTCCCCGTACGCCGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4545_5151_0:0:0_1:0:0_12a/2 +CGAAGTTGCGGCTCATTCTGATTCTGAACAGCTTCTTGGGAAGTAGCGACAGCATGGTTTTTAGTGAGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4844_5303_1:0:0_1:0:0_12b/2 +TCGGCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2222_2679_1:0:0_1:0:0_12c/2 +CTCAAAGCGAACCAAACAGGCAAAAAATTTAGGGTCGGCATCACAAGCAATATCAGCACCAACAGAAACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2444_2928_2:0:0_2:0:0_12d/2 +AGCTGGTTCTCACTTCTGTTACTCCATCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTAGATCGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4092_4573_1:0:0_0:0:0_12e/2 +TCCCGAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTTGGAAGAGATTCTGTCTTTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_834_1362_4:0:0_1:0:0_12f/2 +GAAGGCGTGATGTAATGACTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGACCGCAGCCGATGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2780_3264_1:0:0_0:0:0_130/2 +TTGACTTCCTTCCCCGTACGCCGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_843_1287_5:0:0_2:0:0_131/2 +ATGTAATGTCTAAAGGTAAACAACGTTCTGGGGCTCGCCCTGGACGTCCGCAGCCGTTGCGAGGACCTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_646_1200_1:0:0_0:0:0_132/2 +TTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGGTGAATTTACGGAAAACATTATTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3270_3825_2:0:0_0:0:0_133/2 +GGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTGCTGAGCTTAATGCTTGGGAGCGTGCTGGTGGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1467_1933_2:0:0_3:0:0_134/2 +ATACGTCACAGCACCTTTAGCGTTAAGGTACTGAATCTCTTTAGTCGCAGTAGGCGGAAAACGAACAATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4607_5096_3:0:0_0:0:0_135/2 +GGTTTTTAGTGAGTTGTTCCATTCTTTAGCTCCTAGACCTTTAGCAGCAAGGTCCATATCTGACTTTTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_728_1261_2:0:0_1:0:0_136/2 +TCCGGTTAAAGCCGCTGAATTTTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGATCTTACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4410_4853_0:0:0_0:0:0_137/2 +CCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4352_4929_0:0:0_3:0:0_138/2 +GTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1956_2434_1:0:0_1:0:0_139/2 +TTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAATGATGTTTTCCGTTCTGGTGATTCGTCTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3149_3669_0:0:0_1:0:0_13a/2 +GGTCATTGGTAAAATACTGACCAGCCGATTGAGCTTGAGTAAGCATTTGGCGCATAATCTCGGAAACCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4171_4684_8:1:0_0:0:0_13b/2 +TCGGCAGCAAGAACCATACGACCAATATCACGAAAATAGTCACGCAAAGCATTGGGATTATCATAAAACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2475_3030_2:0:0_4:0:0_13c/2 +GAATGCCAGCGGAGGCTGCTTTTTGACCTCCTCCCAACAATTTAGACATGGCGCCACCAGCAAGAGCAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2950_3525_2:0:0_2:0:0_13d/2 +GCGGTATTGCTTCTGGTCTTGCTGGTGGCGCGATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4023_4465_2:0:0_4:0:0_13e/2 +TCCTTAATACCTTTCTTTTTGGGGTAATTATAGTCATGGCGAATATCCTTAATAGGGCGTTCAGCAGGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3513_4054_2:0:0_0:0:0_13f/2 +GGTTTAAGAGCCTCGATACGCTCAAAGTCAAAATAATCAGCGTGACATTCAGAAGGGTAATAAGAACGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3003_3447_4:0:0_0:0:0_140/2 +GGTCAAAAATCCGCCTCCGGTGGCATTCAAGGTGCTGTGCTTGCTACCGATAACAAAACTGTATGCATGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2630_3159_1:0:0_2:0:0_141/2 +CCATAGCACCAGAAACAAAACTAGGGGCGGGCTCATCAGGGTTAGGAACATTATAGCCTTGAATGGCAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_991_1469_1:0:0_0:0:0_142/2 +CATCATCTTGATTAAGCTCATTAGGGTTAGCCTCGGTACGGTCAGGCATCCACGGCGCTTTAAAATAGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3107_3521_2:0:0_1:0:0_143/2 +TAATTTTCCTACCCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_510_1017_1:0:0_1:0:0_144/2 +AAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGAACGCTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2494_2909_4:0:0_1:0:0_145/2 +ACACCTAAAGCTACATCGTCAACGTAATCTTTTGAAAGTTTGACGGTTAATGCTGTTAATGGTGGTTTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2323_2835_0:0:0_1:0:0_146/2 +CCAAACCATGAAACCAACATAAACATAATTGCCCGGCGTACGGGGAAGGACGTCAATAGTCACACAGTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1369_1897_0:0:0_2:0:0_147/2 +TTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_373_836_1:0:0_2:0:0_148/2 +TTCTTCACTTAATTTTTGACGCACGTTTTCTTCTGCGTCAGTAAGAACGTCAGTGTTTCCTGCGCGTACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2718_3231_1:0:0_1:0:0_149/2 +CAAGCAACTTATCAGAAACGGCAGAAGTGCCAGCCTGCCACGTACCTTCAAGAAGTCCTTTACCAGCTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1807_2308_0:0:0_4:0:0_14a/2 +TAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3672_4168_0:0:0_2:0:0_14b/2 +ATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAATCAGCGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_213_698_1:0:0_0:0:0_14c/2 +AAATTCAGCGCCTTCCATGATGAGACAGGCCGTTTGAATGTTGACGGGATGAACATAATAAGCAATGACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2409_2834_3:1:0_0:0:0_14d/2 +CAAACCATGAAACCAACATAAACATTATTGCCCGGCGTACGGGGAAGGACGTCAATAGTCACACAGTCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_815_1375_1:0:0_0:0:0_14e/2 +AAACAAATGCTTAGGGATTTTATTGGTATCAGGGTTAATCGTGCCAAGAAAAGCGGCATGGTCAATATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1904_2377_0:0:0_1:0:0_14f/2 +TACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2653_3132_3:0:0_4:0:0_150/2 +CGGCCTCATCAGGGTTAGGAACAATAGAGCCTTGAATGGCAGATTTAATAGCAGGCTCACCCATGCCTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2538_3069_0:0:0_0:0:0_151/2 +GGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTCAACGCCGCTAATCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4204_4693_0:1:0_4:0:0_152/2 +ACGGCCATAAGGCTGCTTCTGACGTTCGTGATTAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3483_3892_1:0:0_2:0:0_153/2 +ATACCATGAGCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATCCCATGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1269_1748_0:0:0_4:0:0_154/2 +CATCCTAGCCCGAAGCCCAGAGATTAGAGCGCATGACAAGAAAAGGACGGTTGTCAGCGTCATAAGAGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_658_1184_3:0:0_0:0:0_155/2 +ACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGGTTCTAGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3380_3876_1:0:0_2:0:0_156/2 +CGTCTTTCCAGAACTTGTTCCAAGTATCGGCCACAGCTTTATCAATACCATGAAAAATATCAACCACACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4780_5302_3:0:0_0:0:0_157/2 +TCGGCTACAGTAACTTTTCCCAGCCTCAATCTCATCTCTCTTTTTGCGTTCTGCTTCAATATCTGGTTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3179_3727_0:0:0_2:0:0_158/2 +TCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1619_2138_3:0:0_0:0:0_159/2 +AATCACCAGAAGGCGGTTCCTGAATGAATGGGAAGCCTTCAAGAAGGTGATAAGCAGGAGAAACATACGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3249_3794_2:0:0_1:0:0_15a/2 +AGTGACGACATTAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAGATCCATACCGCTGATTCTGCGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1838_2396_2:0:0_1:0:0_15b/2 +GAGCATGGCACTATTTTTACTCTTGCGCTTGTTCGTTATCCGCCTACTGCGACTAAAGAGATTCAGTACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1353_1755_0:0:0_2:0:0_15c/2 +CCCTCAACATCATAGCCAGATGCCCAGCGATTAGAGCGCATGACAAGTAAAGGACGGTTGTCAGCGTCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3326_3882_2:0:0_1:0:0_15d/2 +GCGTGCTGGTGCTGATGCATCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_650_1215_2:0:0_0:0:0_15e/2 +TCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTCCGTAAAACATTATTAATGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1532_2061_0:0:0_2:0:0_15f/2 +TAACGATACCACTGAGCCTCAGCAATCTTAAACTTCTTCGACGAATCACCAGAACGGAAAACATCCTTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1320_1798_1:0:0_1:0:0_160/2 +CGGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1896_2319_0:0:0_3:0:0_161/2 +AGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2219_2691_0:0:0_0:0:0_162/2 +AACCGAAGAAGACTCAAAGCGAACCAAACAGGCAAAAAATTTAGGGTCGGCATCAAAAGCAATATCAGCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2251_2847_1:0:0_1:0:0_163/2 +GCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTAAAACGCCGAAGCGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_845_1299_1:0:0_2:0:0_164/2 +GTGTTAACAGTCGGGATAGGAGTGGCATTAACAGCATCCTTCATGAACTTAATCCACTGTTCACCATAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_799_1282_0:0:0_0:0:0_165/2 +AGGAGTGGCATTAACACCATCCTTCATGAACTTAATCCACTGTTCACCATAAACGTGACGATGAGGGACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1799_2324_1:0:0_1:0:0_166/2 +CAGACCTATAAACATTCTGTGCCGCGTTTCTTTTTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4783_5286_3:0:0_0:0:0_167/2 +TTCCCAGCCTCAATCTCATCTCTCTTTTTGCGTTCTGCTTCAATATCTGGTTGAACGGCGTCGCGTCGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1171_1747_1:0:0_1:0:0_168/2 +TGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTGCCTCATCGTCACGTTTATGGTGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1378_1811_1:0:0_1:0:0_169/2 +GGGTTATTTGAATATCTATAACAAGTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3494_3903_2:0:0_2:0:0_16a/2 +GAAAGACCAGGTATATGCACAAAATGATATGCTAGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3051_3546_1:0:0_2:0:0_16b/2 +ACTCCTTCTTTTGATAAGCAAGCATCTCATTTTGTGCATATACCTTGTCTTTCGTATTCTGGCGTGAAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4761_5246_1:0:0_2:0:0_16c/2 +CAATATCTGGTTGAACGGCGTCGCGTCGTAACCCAGCTTGGTAAGATGGAATAAGCACTCCGTGGACAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1408_1884_1:0:0_1:0:0_16d/2 +GTAGGCGGAAAACGAACAAGCGCAAGAGTAAACATAGTGCCATGCTCAGGAACAAAGAAAGGCGGCACAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2046_2510_1:0:0_2:1:0_16e/2 +GATGTAGCTTTAGGTGTCTGTAAAACAGGTGCCGAAGAAGCTGGAGTTACAGACGTGAGAACGAGCTTAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3101_3478_2:0:0_1:0:0_16f/2 +GTCGCCGACTGAATGCCAGCAATCTCTTTTTGAGTCTCATTTTGCATCTCGGCAAACTCTTTCTGATTGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_46_522_6:0:0_1:0:0_170/2 +CAATCCAAACTTTGTTACTCGTCAGAAACTCGAAATCATCTTCGGTTAAATCCAAAACGGCAGAAGCCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1559_2008_1:0:0_2:0:0_171/2 +ACGGAAAACATCCTTCATAGAAATTTCACGCGGCGGCAAGATGCCATACACAACAGGGTCGCCAGCAATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2664_3190_1:0:0_3:0:0_172/2 +TTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACAGCCTATGATGTTTATCCTTTGAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2281_2810_1:0:0_0:0:0_173/2 +TTATTGCCCGGCGTACGGGGAAGGACGTCAATAGTCACACAGTCCTTGACGGTATAATAACCACCATCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2317_2686_1:0:0_2:0:0_174/2 +AAGACGACTCAAAGCGAACCAAACAGGCAAAAAATTTAGGGTCGGCATCAAAAGCACTATCAGCACCAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1208_1696_2:0:0_2:0:0_175/2 +GTCAGCGTCATAAGAGGTTTAACCTCCAAATGAAGAAATCACATCACGGTAACGCTGCATGAAGTAATCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2632_3141_3:0:0_4:0:0_176/2 +GCTTTTGATGCCGACCCTAAAATTTTTGCCTGTTAGGTTCGCTTTTAGTCTTCTTCGGTTCCGACTACCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4736_5291_1:0:0_1:0:0_177/2 +GCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACATCCTACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3350_3791_2:0:0_3:0:0_178/2 +GACGACATTCGAAATATCCTTTGCAGTAGCGCGAATAAGAGAAGAGCCATACCGCTGATTCTGCGTTTGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3234_3580_2:0:0_1:0:0_179/2 +TTGGTTGGACTTGGTGGCAAGTCTTCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGGTGCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4141_4674_2:0:0_1:0:0_17a/2 +GAACCATACGACCAATATCACGAAAATAGTCACGCAAAGCATTGGGATTATCATAAAACGCCTCAAATCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_430_934_2:0:0_0:0:0_17b/2 +ACGAGCGCCTTTACGCTTGCCTTTAGTACCTCGCAACGGCTGCGGACGACCAGGGCGAGCGCCAGAACGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2455_3023_2:0:0_0:0:0_17c/2 +ACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACATACACCTAAAGCTACATCGTGAACGTTATATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1518_1973_2:0:0_3:0:0_17d/2 +CGCTTCCTCCTGAGACTGAGCTTTCTCTCCAAATGACGACTTCTACCACATGTATTGACATTATGGGTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4695_5207_1:0:0_0:0:0_17e/2 +GGTAAGTTGGATTAAGCACTCCGTGGACAGATTTGTCATTGTGAGCATTTTCATCCCGAAGTTGCGGCTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_617_1006_0:0:0_0:0:0_17f/2 +AGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCCTGCAATTAAAATTGTTGACCACCTACATACCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4479_4950_1:0:0_1:0:0_180/2 +GCCACAACCAACCAGACCGTGAAAAAGCGTCCTGCGTGTAGCGAACTGCGATGGGCATACTGTAACCATA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3490_3952_0:0:0_3:0:0_181/2 +AAAACATACAATTGGGAGGGTGTCAATCCTTACTGTAATTTCCTAGACAAATTAGAGCCAATACCATCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_319_728_0:0:0_3:0:0_182/2 +GTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1858_2282_1:0:0_1:0:0_183/2 +ACGAAGTCATGATTGAATCGCGAGTGGTCGGCAGATTGCGATAAACGGTCACATTCAATTTAACCTGACT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2004_2506_0:0:0_1:0:0_184/2 +TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_602_1105_1:0:0_3:0:0_185/2 +CGGAGTAGTTGAAATGTTAATAAGACGACCAATCTGAGCAGCAAGGAAGCCAAGATGGGAAAGGACATGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2952_3480_3:0:0_3:0:0_186/2 +GGTATTGCTTCTGCTCTTTCTGGTGTCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCGTCCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2301_2843_0:0:0_1:0:0_187/2 +AGGTTATAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_22_543_0:0:0_1:0:0_188/2 +GAGCACGAGAGCGGTCAGTAGCAATCCAAACTTTGTTACTCGTCAGAAAATCGAAATGATCTTCGGTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_298_810_0:0:0_0:0:0_189/2 +GTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3859_4357_1:0:0_2:0:0_18a/2 +ACAATTACTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCGTCAGGATT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2386_2882_0:0:0_1:0:0_18b/2 +AGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_686_1222_2:0:0_4:0:0_18c/2 +AAGAGGGACCTAAAAAGTAAAAATGTCTACAGTAGAGTCAATAGGAAGGCCACGACGCAATGGAGAACGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_237_775_3:0:0_1:0:0_18d/2 +GCGCGTACACGCAAGGTAAACGCGAACAATTCAGCGGCTTTAACCGGACGCTCGCCGCCATTAATAATGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2683_3176_2:0:0_0:0:0_18e/2 +TCCTTTACCAGCTTTAGCCATAGCACCAGAAACAAAACTAGGGGCGGCCTCATCAGGGTTAGGAACATTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2587_2995_0:0:0_1:0:0_18f/2 +AACAATTTAGACATGGCGCCACCAGCAAGAGCAGACGCAATACCGCCAGCAATAGCACCAAACATAAATC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3811_4363_0:0:0_2:0:0_190/2 +TGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_122_530_3:0:0_2:0:0_191/2 +GCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGCGAAGCTCTAACTTTGCGACCTTACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_236_669_1:0:0_0:0:0_192/2 +CCGTTTGAATGTTGACGGGATGAACATAATAAGCAATGACGGCAGCAATAAACTCAACAGGAGCAGGAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3470_4004_2:0:0_0:0:0_193/2 +AGAAGGGTAATAAGAACGAACCATAAAAAAGCCTCCAAGATTTGGAGGCATGAAAACATACAATTGGGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_571_1096_2:0:0_1:0:0_194/2 +GTACGCTGGACTTTTTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCTTCATTGCTTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_776_1244_1:0:0_2:0:0_195/2 +CCTGTTCCCCATAAACGTGACGATGAGGGACATAAAAAGTAAAAATGTCTACAGTAGAGTCAATAGCAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2455_2920_0:1:0_2:0:0_196/2 +ACTTAAGTGGCTGGAGACACATAATCTCTTTAATAACCAGATTCAGCGAAACCAATCCGCGGCATTTAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1718_2250_0:0:0_2:0:0_197/2 +CGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3190_3751_0:0:0_2:0:0_198/2 +GAAGAGCCATACCGCTGATTGTGCGTTTGCTTATGAACTAAGTCAACCTCAGCACTAACCTTGCGAGTCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3331_3851_0:0:0_3:0:0_199/2 +ATCGGCAACAGCTTTATCAATACGATGAAAAATATCAACCACACCAGAAGGAGCATCAGTGACGACATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4766_5215_1:0:0_1:0:0_19a/2 +TCATTTCCATGCGGTGCATTTTATGCGGCCACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2701_3198_1:0:0_3:0:0_19b/2 +CCTGCAACGTACCTTCAAGAAGTCCTTTACCAGCTTTAGCCAAAGCACCAGAACCAAAACTAGGGGCGGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_627_1092_1:0:0_0:0:0_19c/2 +ATGGTAATAAGACGACCAATCTGACCAGCAAGGAAGCCAAGATGGGAAAGGTCATGCGGCATACGCTCGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1013_1383_2:0:0_1:0:0_19d/2 +TAACCCTGAAACAAAAGCTTAGGGATTTTATTGGTATCAGGGTTAATCGTGCCAAGAAAAGCGGCATGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1081_1579_1:0:0_0:0:0_19e/2 +AATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1460_2036_1:0:0_2:0:0_19f/2 +TCTTAAACTTCTTAGACTAATCACCAGAACGGAAAACATCCTTCATAGAAATTTCACGGGGCGGCAAGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3843_4322_3:0:0_2:0:0_1a0/2 +GTTGCCGATACTTGTAACAATTTCTGGAAAGACGGAAAAGCTGATGGTATTGGCTCTAATTTTTCTAGGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1481_2050_0:0:0_1:0:0_1a1/2 +TTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1446_1947_4:0:0_2:0:0_1a2/2 +CCAGCAATATCGGTATAAGTCAAAGCACCTTTAGCGTTAAGGTACTGAATCTCTTTAGTCGGCGTAGGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1345_1917_1:0:0_5:0:0_1a3/2 +TGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACAATTTTAAAGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1089_1572_0:0:0_4:0:0_1a4/2 +CCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1921_2362_1:0:0_3:0:0_1a5/2 +TGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCACCTTGCCGCCGCGTGAAATTTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_659_1076_3:0:0_0:0:0_1a6/2 +CATTCAAACGGCCTGTCTCATGAATGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2511_2948_1:0:0_0:0:0_1a7/2 +AGCAATAGCACCAAACATAAATCACCTCACTTAAGTGGCTGGAGACAAATAATCTCTTTAATAACCTGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2128_2637_1:0:0_3:0:0_1a8/2 +AAAAGCAATATCAGCACCAACAGCAAGAACCTGATTAGCGGCGTTGACAGATGTATCCATCTTAATGCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2085_2595_0:0:0_0:0:0_1a9/2 +GTTGACAGATGTATCCATCTGAATGCAATGAAGAAAACCACCATTACCAGCATTAACCGTCAAACTATCA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3202_3682_0:0:0_3:0:0_1aa/2 +GCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1146_1578_1:0:0_2:0:0_1ab/2 +ATGTCAATAGATGAGTTAGAAGTCGTCATTTGGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3461_3903_0:0:0_1:0:0_1ac/2 +AATTAGAGCCAATACCATCAGCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2879_3393_1:0:0_1:0:0_1ad/2 +TAAGCTCTTTTTGATTCTCAAATCCGGCGTCAACCATACCAGCAGAGGAAGCATCAGCACCAGCACGGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3563_4092_2:0:0_1:0:0_1ae/2 +GTCTATTATGGAAAACACCAATCTTTCCAAGCAACATCAGGTTTCCGAGATTATGCGCCAAATGCTTAGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4631_5121_1:0:0_1:0:0_1af/2 +CAATGCTTTGCGTGACTATTTTCGTGATAATGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4545_5053_0:0:0_2:0:0_1b0/2 +CGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2102_2673_2:0:0_1:0:0_1b1/2 +GCGAACCAAACAGGCAAAAAATTTAGGGTGGGCATCAAAAGCAATATCAGCACCAACAGAAACAACCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4424_4979_2:0:0_1:0:0_1b2/2 +TTTAAGCGGCTCACCTTTAGCCTCAACAGGCCACAACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4411_4876_2:0:0_0:0:0_1b3/2 +CACGTATTTTGCAAGCTATTTAACTGGCGGCGATTGCGTACCCGACGACCAAAATTAGGGTCAACGCTAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_906_1382_1:0:0_1:0:0_1b4/2 +GTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATATTAATTGCAGGGGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3494_4032_1:0:0_0:0:0_1b5/2 +GAAAGACGAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3517_3986_3:0:0_2:0:0_1b6/2 +ATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCTTCTAATATGGAAAACACCACTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_636_1180_0:0:0_3:0:0_1b7/2 +GCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1802_2252_1:0:0_1:0:0_1b8/2 +ACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATTTTTACTCTTGCGCTTGTTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4015_4468_2:0:0_2:0:0_1b9/2 +TCATCCTTAATACCTTTCTTTTTGGGGTAATTATACTCATCGCGAAAATCCTTAAGAGGGCGTTCAGCAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3002_3515_1:0:0_1:0:0_1ba/2 +TTGTGCATAAACCTGGTCTTTCGTATTCTGGCGTGAAGTCGCCGACTGAATGCCAGCAATCTCTTTTTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3831_4383_2:0:0_1:0:0_1bb/2 +ATTGATACAGCTGTTGCCGATACTTGGACCAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2366_2810_0:0:0_0:0:0_1bc/2 +CGGTAGGTTTTCTGCTTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3593_4041_2:0:0_1:0:0_1bd/2 +GCAACAGCAGGTTTCCGAGATTATGCGCCCAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAATTTACC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_284_594_3:0:0_3:0:0_1be/2 +ATGAGTCCCATTTTGTTCATGGTAGAGATTCTCTTGTTGACATAATAAAAGAGCGTGGATTACTATCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_694_1158_1:0:0_2:0:0_1bf/2 +GAAAGACGTAGAGCGCCAACGGCGTCCATCTCGAAGGAGTCGGCAGCGATAACCGGAGTAGTTGAAATGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3656_4122_2:0:0_0:0:0_1c0/2 +TTTTACCAATGACCAAATCAAAGACATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTCATCATCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1839_2262_1:0:0_1:0:0_1c1/2 +AGCATTGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4733_5272_1:0:0_1:0:0_1c2/2 +TGTGCCTGAGTATGGTACAGCAAATGGCCGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3991_4443_1:0:0_3:0:0_1c3/2 +GGTAATTATACTCATCGCGAATATCCTTAAGAGGGGGTTCAGCAGGCAGCTTGCGTCAAAACTGCGTAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4068_4551_0:0:0_0:0:0_1c4/2 +TGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3236_3794_1:0:0_2:0:0_1c5/2 +AGTGACGACATTAGAAATCTCCTTTGCAGTAGCGCCAATATGAGAAGAGCCATACGGCTGATTCTGCGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2950_3435_3:0:0_2:0:0_1c6/2 +GCATCTCGGCAAACTCTTTCTGATTGTCCAGTTGCATTTTAGTAAGCTCTTTTTGATACTCAAATCCGGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4444_4991_0:0:0_2:0:0_1c7/2 +ATAACTGGTAGCTTTAAGCGGCTCACCTTTAGCATCAACAGGCCACAACCAACCAGAACGAGAAAAAGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_177_628_1:0:0_0:0:0_1c8/2 +GCAGCAATAAACTCAACAGGAGCAGGAAAGCGAGGGTATCCCACAAAGTCCAGCGTACCATAAACGCAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_982_1480_1:0:0_2:0:0_1c9/2 +ACCATAACGAGCATCATCTTGATTCAGCTCATTAGGGTTAGCCTCGGTACGGTCAGGCCTCCACGGCGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2020_2542_0:0:0_1:0:0_1ca/2 +TAACCGTCAAACTATCAAAATAAAACGTTGACGATGTAGCTTTAGGTGTCTGTAAAACAGGTGCCGAAGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4604_5048_0:0:0_0:0:0_1cb/2 +AAGGTCCATATCTGACTTTTTGTTAACGTATTTAGCCACATAGAAACCAACAGCCATATAACTGGTAGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2334_2823_1:0:0_1:0:0_1cc/2 +TTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTAATCATGTATCAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_385_918_1:0:0_2:0:0_1cd/2 +TTGCCTTTAGTACCTCGCAACGGCTGCGGACGACCAGGGCGAGCGCCAGAACTTTATTTACCTTTAGACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3121_3630_2:0:0_0:0:0_1ce/2 +TAAGCATTTGGCGCATAATCTCGGAAACCTGCTGTTGCTTGGAAAGATTGGTGTTTTCCATAATAGACGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_812_1266_2:1:0_3:0:0_1cf/2 +CGTGCGTCAAAATTTACGTGCAGAAGGAGTGATGAAATGTCTAAAGGTAAAAAACGTTCTGTCGCTCGCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_272_635_1:0:0_1:0:0_1d0/2 +ACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGCTTCTCTTGTTGACATTTTAAAAGAGCGTGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4737_5203_2:0:0_4:0:0_1d1/2 +AGTTGGATTAAGCACTCCGTGGACAGATTTTTCATTTTGAGCATAATCATCCCGAAGTTGCGGCTCATTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4029_4475_1:0:0_1:0:0_1d2/2 +TGAACACTCATCCATAATACCTTTCTTTTTGGGGTAATTATACTCATCGCGAATATCCTTAAGAGGGCGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4090_4621_1:0:0_3:0:0_1d3/2 +TAAAACGCCTCTAATCGGTCGTCAGCCAAGGTGAGAGTGTCAAAAACGATAAACGAACCATCAGGATGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4630_5196_3:0:0_2:0:0_1d4/2 +CCAATGCTTTGCGTGACTCTATTCGTGATATTGGTCGAATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3008_3541_1:0:0_0:0:0_1d5/2 +AAACGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1334_1804_0:0:0_2:0:0_1d6/2 +GGTCTTTTGAACACGACCAGAAAACTGGCCTAACGACGTTTGGTCAGTTCCATCACCATCATAGCCAGAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4247_4753_1:0:0_0:0:0_1d7/2 +TGTTACTGAGAAGTTAATGGATGAATTGGCACAATGCTACAAAGTGCTCCCCCAACTTGATATTAATAAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4624_5113_2:0:0_2:0:0_1d8/2 +GGAAGTAGCGACAGCTTTGTTTTTAGTGAGTTGTTCCATTCTTTAGCTCCTAGACCTTTAGCAGCCAGGT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1604_2110_1:0:0_1:0:0_1d9/2 +AATTTGCATACTGACCAAGAACGTTATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3189_3705_0:0:0_0:0:0_1da/2 +CCTCAGCACTAACCTTGCGAGTCATTTCTTTGATTTGGTCATTGGTAAAATACTGACCAGCCGTTTGAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2571_3036_0:0:0_1:0:0_1db/2 +CACCTTGAATGCCACCGGAGGCGGCTTTTTGACCGCCTCCAAAGAATTTAGACATGGCGCCACCAGCAAG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2454_2885_1:1:0_0:0:0_1dc/2 +CACTTCTGTAACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTATAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2639_3200_1:0:0_1:0:0_1dd/2 +ATGCCGACCCTAAATTTTTTGCCTGTTTGGTTCGGTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGAC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3024_3566_2:0:0_1:0:0_1de/2 +AGACGCAACGCGAGCAGTAGACTCCTTCTGTTGATAAGCAAGCATCTCATTTTTTGCATATACCTGGTCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3247_3815_1:0:0_2:0:0_1df/2 +GTGGCAAGTGTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3223_3567_2:0:0_3:0:0_1e0/2 +TAGACGCAACGCGAGCAGTCGACTCCTTCTGTTGAAAAGCAAGCATCTCATTATGTGCATATACCTGGTC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1692_2163_3:0:0_1:0:0_1e1/2 +TGGCGAATAAGTACGCGTTCTTGCAAATCACCAGAAGGCGGTTCCTGAATGAATGGGACGCCTTCAAGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2788_3310_1:0:0_5:0:0_1e2/2 +CTTCCCCGTACGCCGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACATTACCGCTACTAAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3894_4392_0:0:0_0:0:0_1e3/2 +GGCTCTAATTTGTCTAGGAAATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4515_5044_3:0:0_0:0:0_1e4/2 +TTTACTATTCAGCGATTGATTCATGCAATGCGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4404_4767_2:0:0_4:0:0_1e5/2 +GAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAACCAGAAAGGTATTAAGGATGAGTGTT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_225_637_0:0:0_1:0:0_1e6/2 +GTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_543_956_2:0:0_3:0:0_1e7/2 +GTTGACCACCTACATACCAAAGACGAGCGCCTTTAGGCTTGCCTTAAGTACGTCGCAACGGCTGCGGACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1929_2438_3:0:0_0:0:0_1e8/2 +GAAAAAAAGTTTGAATTATGGCGAGAAATAAAAGTCTGAAACATGATTAAACTCCTAAGCAGAAAACCTA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_492_987_1:0:0_1:0:0_1e9/2 +GTAAGGGGCCGAAGCCCCTGCAATTAAAATTGTTGACCACCTACCTACCAAAGACGAGCGCCTTTACGCT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3808_4333_2:0:0_1:0:0_1ea/2 +GTGTGGTTGATATTTTTGATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAATACGG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2304_2701_0:0:0_1:0:0_1eb/2 +GGGTAGTCGGAACCGAAGAAGACTCAAAGCGAACCAAACAGGCAAAAAATTTAGGGTCGGCATGAAAAGC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2008_2481_4:0:0_1:0:0_1ec/2 +TGCCGAAGAAGCTGGAGTAACAGAAGTGAGAACCAGCTTATCAGAAAAAAAGATTGAATTATGGCGAGAA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3419_3973_2:0:0_0:0:0_1ed/2 +CCTCCAAGATTTGGAGGCATGAAAACATACAATTGGGAGGGTGTCAATCCTGACGGTTATTTCCTAGACA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_383_987_3:0:0_1:0:0_1ee/2 +AGAAATGATGAGTCAAGTTACTGAACAATCCGTACGTATCCAGACCGCTTTGGCCTCTATTAAGCTCAAT ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_1054_1487_0:0:0_2:0:0_1ef/2 +TGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCC ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_4040_4592_2:0:0_0:0:0_1f0/2 +CGTGAGAGTGTCAAAAACGATAAACCAACCATCAGCATGAGCCTGTCGCATTGCATTCATCAAACGCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2907_3500_0:0:0_0:0:0_1f1/2 +CCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_2716_3207_1:0:0_1:0:0_1f2/2 +GATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACAATTGACG ++ +2222222222222222222222222222222222222222222222222222222222222222222222 +@phiX174_3328_3788_1:0:0_1:0:0_1f3/2 +GACATTAGAAATATGCTTTGCAGTAGCGCCAATATGAGAAGAGCCATACCGCTGATTCTGCGTTTGCTGA ++ +2222222222222222222222222222222222222222222222222222222222222222222222
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/phiX.fa Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,79 @@ +>phiX174 +GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT +GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA +ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG +TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA +GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC +TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT +TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT +CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT +TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG +TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC +GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA +CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG +TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT +AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC +CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA +TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC +TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA +CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA +GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT +GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA +ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC +TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT +TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC +ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAAC +CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT +GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC +CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC +TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG +TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT +TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA +AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT +TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT +ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC +GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC +TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT +TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA +TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG +TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC +CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG +AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC +CGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT +TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG +CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA +AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT +GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG +GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA +TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT +CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG +TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA +GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC +CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA +TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA +AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC +TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT +CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA +TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG +TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT +CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT +TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC +ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG +TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA +ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG +GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC +CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT +GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAG +GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT +ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG +CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC +CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC +GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT +CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG +CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA +TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT +TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG +TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC +AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC +TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/hisat2_indexes.loc.sample Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,39 @@ +# hisat2_indexes.loc.sample +# This is a *.loc.sample file distributed with Galaxy that enables tools +# to use a directory of indexed data files. This one is for HISAT2. +# See the wiki: http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup +# First create these data files and save them in your own data directory structure. +# Then, create a hisat2_indexes.loc file to use those indexes with tools. +# Copy this file, save it with the same name (minus the .sample), +# follow the format examples, and store the result in this directory. +# The file should include an one line entry for each index set. +# The path points to the "basename" for the set, not a specific file. +# It has four text columns seperated by TABS. +# +# <unique_build_id> <dbkey> <display_name> <file_base_path> +# +# So, for example, if you had sacCer3 indexes stored in: +# +# /depot/data2/galaxy/sacCer3/hisat2_indexes/ +# +# containing sacCer3 genome and sacCer3.*.ht2 files, such as: +# +# -rw-rw-r-- 1 dave dave 12M Sep 23 13:57 sacCer3.1.ht2 +# -rw-rw-r-- 1 dave dave 2.9M Sep 23 13:57 sacCer3.2.ht2 +# -rw-rw-r-- 1 dave dave 161 Sep 23 13:57 sacCer3.3.ht2 +# -rw-rw-r-- 1 dave dave 2.9M Sep 23 13:57 sacCer3.4.ht2 +# -rw-rw-r-- 1 dave dave 7.3M Sep 23 13:57 sacCer3.5.ht2 +# -rw-rw-r-- 1 dave dave 3.0M Sep 23 13:57 sacCer3.6.ht2 +# -rw-rw-r-- 1 dave dave 128K Sep 23 13:57 sacCer3.7.ht2 +# -rw-rw-r-- 1 dave dave 32K Sep 23 13:57 sacCer3.8.ht2 +# +# then the hisat2_indexes.loc entry could look like this: +# +#sacCer3 sacCer3 S. cerevisiae Apr. 2011 (SacCer_Apr2011/sacCer3) (sacCer3) /depot/data2/galaxy/hisat2_indexes/sacCer3 +# +#More examples: +# +#mm10 mm10 Mouse (mm10) /depot/data2/galaxy/hisat2_indexes/mm10 +#dm3 dm3 D. melanogaster (dm3) /depot/data2/galaxy/hisat2_indexes/dm3 +# +#
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,7 @@ +<tables> + <!-- Locations of indexes in the HISAT mapper format --> + <table name="hisat2_indexes" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/hisat2_indexes.loc" /> + </table> +</tables>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sat Oct 10 14:54:39 2015 -0400 @@ -0,0 +1,9 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="hisat" version="2.0"> + <repository changeset_revision="c65f00072e57" name="package_hisat_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="samtools" version="1.2"> + <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>