Mercurial > repos > iuc > hivclustering

comparison test-data/hivclustering-out2.json @ 0:ef842bb94d1f draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c
author iuc
date Thu, 14 Jun 2018 07:04:38 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:ef842bb94d1f
1 {
2 "Cluster sizes": [
3 8
4 ],
5 "Degrees": {
6 "Distribution": [
7 0,
8 0,
9 0,
10 0,
11 0,
12 0,
13 8
14 ],
15 "Model": "Negative Binomial",
16 "fitted": null,
17 "rho": 0.0,
18 "rho CI": [
19 0.0,
20 0.0
21 ]
22 },
23 "Directed Edges": {
24 "Count": 0,
25 "Reasons for unresolved directions": {
26 "Missing dates": 28
27 }
28 },
29 "Edges": [
30 {
31 "attributes": [
32 "BULK"
33 ],
34 "directed": false,
35 "length": 0.045156,
36 "removed": false,
37 "sequences": [
38 "B_FR_83_HXB2_ACC_K03455_5",
39 "B_US_83_RF_ACC_M17451"
40 ],
41 "source": 3,
42 "support": 0.0,
43 "target": 4
44 },
45 {
46 "attributes": [
47 "BULK"
48 ],
49 "directed": false,
50 "length": 0.0296218,
51 "removed": false,
52 "sequences": [
53 "B_FR_83_HXB2_ACC_K03455_5",
54 "B_US_86_JRFL_ACC_U63632"
55 ],
56 "source": 3,
57 "support": 0.0,
58 "target": 0
59 },
60 {
61 "attributes": [
62 "BULK"
63 ],
64 "directed": false,
65 "length": 0.0327566,
66 "removed": false,
67 "sequences": [
68 "B_FR_83_HXB2_ACC_K03455_5",
69 "B_US_90_WEAU160_ACC_U21135"
70 ],
71 "source": 3,
72 "support": 0.0,
73 "target": 1
74 },
75 {
76 "attributes": [
77 "BULK"
78 ],
79 "directed": false,
80 "length": 0.0669206,
81 "removed": false,
82 "sequences": [
83 "B_FR_83_HXB2_ACC_K03455_5",
84 "D_CD_83_ELI_ACC_K03454_7"
85 ],
86 "source": 3,
87 "support": 0.0,
88 "target": 2
89 },
90 {
91 "attributes": [
92 "BULK"
93 ],
94 "directed": false,
95 "length": 0.0592586,
96 "removed": false,
97 "sequences": [
98 "B_FR_83_HXB2_ACC_K03455_5",
99 "D_CD_83_NDK_ACC_M27323"
100 ],
101 "source": 3,
102 "support": 0.0,
103 "target": 5
104 },
105 {
106 "attributes": [
107 "BULK"
108 ],
109 "directed": false,
110 "length": 0.0663619,
111 "removed": false,
112 "sequences": [
113 "B_FR_83_HXB2_ACC_K03455_5",
114 "D_CD_84_84ZR085_ACC_U88822"
115 ],
116 "source": 3,
117 "support": 0.0,
118 "target": 6
119 },
120 {
121 "attributes": [
122 "BULK"
123 ],
124 "directed": false,
125 "length": 0.0847988,
126 "removed": false,
127 "sequences": [
128 "B_FR_83_HXB2_ACC_K03455_5",
129 "D_UG_94_94UG114_ACC_U88824"
130 ],
131 "source": 3,
132 "support": 0.0,
133 "target": 7
134 },
135 {
136 "attributes": [
137 "BULK"
138 ],
139 "directed": false,
140 "length": 0.048328,
141 "removed": false,
142 "sequences": [
143 "B_US_83_RF_ACC_M17451",
144 "B_US_86_JRFL_ACC_U63632"
145 ],
146 "source": 4,
147 "support": 0.0,
148 "target": 0
149 },
150 {
151 "attributes": [
152 "BULK"
153 ],
154 "directed": false,
155 "length": 0.0515908,
156 "removed": false,
157 "sequences": [
158 "B_US_83_RF_ACC_M17451",
159 "B_US_90_WEAU160_ACC_U21135"
160 ],
161 "source": 4,
162 "support": 0.0,
163 "target": 1
164 },
165 {
166 "attributes": [
167 "BULK"
168 ],
169 "directed": false,
170 "length": 0.0810759,
171 "removed": false,
172 "sequences": [
173 "B_US_83_RF_ACC_M17451",
174 "D_CD_83_ELI_ACC_K03454_7"
175 ],
176 "source": 4,
177 "support": 0.0,
178 "target": 2
179 },
180 {
181 "attributes": [
182 "BULK"
183 ],
184 "directed": false,
185 "length": 0.0661066,
186 "removed": false,
187 "sequences": [
188 "B_US_83_RF_ACC_M17451",
189 "D_CD_83_NDK_ACC_M27323"
190 ],
191 "source": 4,
192 "support": 0.0,
193 "target": 5
194 },
195 {
196 "attributes": [
197 "BULK"
198 ],
199 "directed": false,
200 "length": 0.0769146,
201 "removed": false,
202 "sequences": [
203 "B_US_83_RF_ACC_M17451",
204 "D_CD_84_84ZR085_ACC_U88822"
205 ],
206 "source": 4,
207 "support": 0.0,
208 "target": 6
209 },
210 {
211 "attributes": [
212 "BULK"
213 ],
214 "directed": false,
215 "length": 0.0955213,
216 "removed": false,
217 "sequences": [
218 "B_US_83_RF_ACC_M17451",
219 "D_UG_94_94UG114_ACC_U88824"
220 ],
221 "source": 4,
222 "support": 0.0,
223 "target": 7
224 },
225 {
226 "attributes": [
227 "BULK"
228 ],
229 "directed": false,
230 "length": 0.0408994,
231 "removed": false,
232 "sequences": [
233 "B_US_86_JRFL_ACC_U63632",
234 "B_US_90_WEAU160_ACC_U21135"
235 ],
236 "source": 0,
237 "support": 0.0,
238 "target": 1
239 },
240 {
241 "attributes": [
242 "BULK"
243 ],
244 "directed": false,
245 "length": 0.0771797,
246 "removed": false,
247 "sequences": [
248 "B_US_86_JRFL_ACC_U63632",
249 "D_CD_83_ELI_ACC_K03454_7"
250 ],
251 "source": 0,
252 "support": 0.0,
253 "target": 2
254 },
255 {
256 "attributes": [
257 "BULK"
258 ],
259 "directed": false,
260 "length": 0.0609044,
261 "removed": false,
262 "sequences": [
263 "B_US_86_JRFL_ACC_U63632",
264 "D_CD_83_NDK_ACC_M27323"
265 ],
266 "source": 0,
267 "support": 0.0,
268 "target": 5
269 },
270 {
271 "attributes": [
272 "BULK"
273 ],
274 "directed": false,
275 "length": 0.0705011,
276 "removed": false,
277 "sequences": [
278 "B_US_86_JRFL_ACC_U63632",
279 "D_CD_84_84ZR085_ACC_U88822"
280 ],
281 "source": 0,
282 "support": 0.0,
283 "target": 6
284 },
285 {
286 "attributes": [
287 "BULK"
288 ],
289 "directed": false,
290 "length": 0.0882054,
291 "removed": false,
292 "sequences": [
293 "B_US_86_JRFL_ACC_U63632",
294 "D_UG_94_94UG114_ACC_U88824"
295 ],
296 "source": 0,
297 "support": 0.0,
298 "target": 7
299 },
300 {
301 "attributes": [
302 "BULK"
303 ],
304 "directed": false,
305 "length": 0.0771856,
306 "removed": false,
307 "sequences": [
308 "B_US_90_WEAU160_ACC_U21135",
309 "D_CD_83_ELI_ACC_K03454_7"
310 ],
311 "source": 1,
312 "support": 0.0,
313 "target": 2
314 },
315 {
316 "attributes": [
317 "BULK"
318 ],
319 "directed": false,
320 "length": 0.0609097,
321 "removed": false,
322 "sequences": [
323 "B_US_90_WEAU160_ACC_U21135",
324 "D_CD_83_NDK_ACC_M27323"
325 ],
326 "source": 1,
327 "support": 0.0,
328 "target": 5
329 },
330 {
331 "attributes": [
332 "BULK"
333 ],
334 "directed": false,
335 "length": 0.0740203,
336 "removed": false,
337 "sequences": [
338 "B_US_90_WEAU160_ACC_U21135",
339 "D_CD_84_84ZR085_ACC_U88822"
340 ],
341 "source": 1,
342 "support": 0.0,
343 "target": 6
344 },
345 {
346 "attributes": [
347 "BULK"
348 ],
349 "directed": false,
350 "length": 0.0890019,
351 "removed": false,
352 "sequences": [
353 "B_US_90_WEAU160_ACC_U21135",
354 "D_UG_94_94UG114_ACC_U88824"
355 ],
356 "source": 1,
357 "support": 0.0,
358 "target": 7
359 },
360 {
361 "attributes": [
362 "BULK"
363 ],
364 "directed": false,
365 "length": 0.0287246,
366 "removed": false,
367 "sequences": [
368 "D_CD_83_ELI_ACC_K03454_7",
369 "D_CD_83_NDK_ACC_M27323"
370 ],
371 "source": 2,
372 "support": 0.0,
373 "target": 5
374 },
375 {
376 "attributes": [
377 "BULK"
378 ],
379 "directed": false,
380 "length": 0.055948,
381 "removed": false,
382 "sequences": [
383 "D_CD_83_ELI_ACC_K03454_7",
384 "D_CD_84_84ZR085_ACC_U88822"
385 ],
386 "source": 2,
387 "support": 0.0,
388 "target": 6
389 },
390 {
391 "attributes": [
392 "BULK"
393 ],
394 "directed": false,
395 "length": 0.0742033,
396 "removed": false,
397 "sequences": [
398 "D_CD_83_ELI_ACC_K03454_7",
399 "D_UG_94_94UG114_ACC_U88824"
400 ],
401 "source": 2,
402 "support": 0.0,
403 "target": 7
404 },
405 {
406 "attributes": [
407 "BULK"
408 ],
409 "directed": false,
410 "length": 0.0491974,
411 "removed": false,
412 "sequences": [
413 "D_CD_83_NDK_ACC_M27323",
414 "D_CD_84_84ZR085_ACC_U88822"
415 ],
416 "source": 5,
417 "support": 0.0,
418 "target": 6
419 },
420 {
421 "attributes": [
422 "BULK"
423 ],
424 "directed": false,
425 "length": 0.0726626,
426 "removed": false,
427 "sequences": [
428 "D_CD_83_NDK_ACC_M27323",
429 "D_UG_94_94UG114_ACC_U88824"
430 ],
431 "source": 5,
432 "support": 0.0,
433 "target": 7
434 },
435 {
436 "attributes": [
437 "BULK"
438 ],
439 "directed": false,
440 "length": 0.0805088,
441 "removed": false,
442 "sequences": [
443 "D_CD_84_84ZR085_ACC_U88822",
444 "D_UG_94_94UG114_ACC_U88824"
445 ],
446 "source": 6,
447 "support": 0.0,
448 "target": 7
449 }
450 ],
451 "HIV Stages": {
452 "Unknown": 8
453 },
454 "Multiple sequences": {
455 "Followup, days": null,
456 "Subjects with": 0
457 },
458 "Network Summary": {
459 "Clusters": 1,
460 "Edges": 28,
461 "Nodes": 8,
462 "Sequences used to make links": 8
463 },
464 "Nodes": [
465 {
466 "attributes": [],
467 "baseline": null,
468 "cluster": 1,
469 "edi": null,
470 "id": "B_FR_83_HXB2_ACC_K03455_5"
471 },
472 {
473 "attributes": [],
474 "baseline": null,
475 "cluster": 1,
476 "edi": null,
477 "id": "B_US_83_RF_ACC_M17451"
478 },
479 {
480 "attributes": [],
481 "baseline": null,
482 "cluster": 1,
483 "edi": null,
484 "id": "B_US_86_JRFL_ACC_U63632"
485 },
486 {
487 "attributes": [],
488 "baseline": null,
489 "cluster": 1,
490 "edi": null,
491 "id": "B_US_90_WEAU160_ACC_U21135"
492 },
493 {
494 "attributes": [],
495 "baseline": null,
496 "cluster": 1,
497 "edi": null,
498 "id": "D_CD_83_ELI_ACC_K03454_7"
499 },
500 {
501 "attributes": [],
502 "baseline": null,
503 "cluster": 1,
504 "edi": null,
505 "id": "D_CD_83_NDK_ACC_M27323"
506 },
507 {
508 "attributes": [],
509 "baseline": null,
510 "cluster": 1,
511 "edi": null,
512 "id": "D_CD_84_84ZR085_ACC_U88822"
513 },
514 {
515 "attributes": [],
516 "baseline": null,
517 "cluster": 1,
518 "edi": null,
519 "id": "D_UG_94_94UG114_ACC_U88824"
520 }
521 ],
522 "Settings": {
523 "contaminants": null,
524 "edge-filtering": null,
525 "threshold": 0.8
526 }
527 }