diff test-data/hivclustering-out1.json @ 0:ef842bb94d1f draft default tip

planemo upload for repository https://github.com/veg/hivclustering/ commit 7d666f963da2c5e3b17c313526cc6169f3242c3c

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hivclustering-out1.json	Thu Jun 14 07:04:38 2018 -0400
@@ -0,0 +1,206 @@
+{
+    "Cluster sizes": [
+        4,
+        3
+    ],
+    "Degrees": {
+        "Distribution": [
+            2,
+            3,
+            2
+        ],
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+        "rho": 3287.8967604237114,
+        "rho CI": [
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+            10000.0
+        ]
+    },
+    "Directed Edges": {
+        "Count": 0,
+        "Reasons for unresolved directions": {
+            "Missing dates": 7
+        }
+    },
+    "Edges": [
+        {
+            "attributes": [
+                "BULK"
+            ],
+            "directed": false,
+            "length": 0.045156,
+            "removed": false,
+            "sequences": [
+                "B_FR_83_HXB2_ACC_K03455_5",
+                "B_US_83_RF_ACC_M17451"
+            ],
+            "source": 2,
+            "support": 0.0,
+            "target": 3
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+        {
+            "attributes": [
+                "BULK"
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+            "directed": false,
+            "length": 0.0296218,
+            "removed": false,
+            "sequences": [
+                "B_FR_83_HXB2_ACC_K03455_5",
+                "B_US_86_JRFL_ACC_U63632"
+            ],
+            "source": 2,
+            "support": 0.0,
+            "target": 0
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+        {
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+                "BULK"
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+            "length": 0.0327566,
+            "removed": false,
+            "sequences": [
+                "B_FR_83_HXB2_ACC_K03455_5",
+                "B_US_90_WEAU160_ACC_U21135"
+            ],
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+        {
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+            "length": 0.048328,
+            "removed": false,
+            "sequences": [
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+            "length": 0.0408994,
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+        {
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+            "directed": false,
+            "length": 0.0287246,
+            "removed": false,
+            "sequences": [
+                "D_CD_83_ELI_ACC_K03454_7",
+                "D_CD_83_NDK_ACC_M27323"
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+            "length": 0.0491974,
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+            "sequences": [
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+            ],
+            "source": 4,
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+            "target": 5
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+    ],
+    "HIV Stages": {
+        "Unknown": 7
+    },
+    "Multiple sequences": {
+        "Followup, days": null,
+        "Subjects with": 0
+    },
+    "Network Summary": {
+        "Clusters": 2,
+        "Edges": 7,
+        "Nodes": 7,
+        "Sequences used to make links": 7
+    },
+    "Nodes": [
+        {
+            "attributes": [],
+            "baseline": null,
+            "cluster": 1,
+            "edi": null,
+            "id": "B_FR_83_HXB2_ACC_K03455_5"
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+        {
+            "attributes": [],
+            "baseline": null,
+            "cluster": 1,
+            "edi": null,
+            "id": "B_US_83_RF_ACC_M17451"
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+        {
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+            "baseline": null,
+            "cluster": 1,
+            "edi": null,
+            "id": "B_US_86_JRFL_ACC_U63632"
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+        {
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+            "baseline": null,
+            "cluster": 1,
+            "edi": null,
+            "id": "B_US_90_WEAU160_ACC_U21135"
+        },
+        {
+            "attributes": [],
+            "baseline": null,
+            "cluster": 2,
+            "edi": null,
+            "id": "D_CD_83_ELI_ACC_K03454_7"
+        },
+        {
+            "attributes": [],
+            "baseline": null,
+            "cluster": 2,
+            "edi": null,
+            "id": "D_CD_83_NDK_ACC_M27323"
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+        {
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+            "baseline": null,
+            "cluster": 2,
+            "edi": null,
+            "id": "D_CD_84_84ZR085_ACC_U88822"
+        }
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+    "Settings": {
+        "contaminants": null,
+        "edge-filtering": null,
+        "threshold": 0.8
+    }
+}