Mercurial > repos > iuc > hmmer3
diff test-data/MADE1.out.pfamtblout @ 0:62479bdcc059 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4164b44c651bcbdac6637eccce61b2a802c9b569
| author | iuc |
|---|---|
| date | Tue, 12 May 2015 15:04:26 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/MADE1.out.pfamtblout Tue May 12 15:04:26 2015 -0400 @@ -0,0 +1,27 @@ +# Sequence scores +# --------------- +# +# name bits E-value n exp bias description +# ------------------- ------ --------- --- ----- ----- --------------------- +MADE1 51.5 7.1e-18 5 9.6 28.5 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon + +# Domain scores +# ------------- +# +# name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description +# ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- +MADE1 34.0 2e-12 4 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 27.6 2e-10 3 0.7 174456 174577 174456 174514 1 44 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 2.8 0.011 5 0.7 304021 304109 304060 304107 27 75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 -4.3 1 1 0.1 80030 80073 80044 80068 30 54 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 -6.7 1 2 3.3 154011 154076 154012 154072 13 71 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +# +# Program: hmmscan +# Version: 3.1b1 (May 2013) +# Pipeline mode: SEARCH +# Query file: test-data/dna_target.fa +# Target file: test-data/MADE1.hmm +# Option settings: hmmscan --tblout tblout --domtblout domtblout --pfamtblout pfamtblout test-data/MADE1.hmm test-data/dna_target.fa +# Current dir: /home/users/cpt/cpt/esr/Projects/galaxy/tools-iuc/tools/hmmer +# Date: Tue Feb 10 14:40:35 2015 +# [ok]