Mercurial > repos > iuc > hmmer_alimask
comparison test-data/MADE1.nhmmscan_out @ 7:80c713789d13 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author | iuc |
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date | Wed, 21 Jul 2021 14:10:41 +0000 |
parents | b4dc65565864 |
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6:92227c141aa5 | 7:80c713789d13 |
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1 # nhmmscan :: search DNA sequence(s) against a DNA profile database | 1 # nhmmscan :: search DNA sequence(s) against a DNA profile database |
2 # HMMER 3.3 (Nov 2019); http://hmmer.org/ | 2 # HMMER 3.3.2 (Nov 2020); http://hmmer.org/ |
3 # Copyright (C) 2019 Howard Hughes Medical Institute. | 3 # Copyright (C) 2020 Howard Hughes Medical Institute. |
4 # Freely distributed under the BSD open source license. | 4 # Freely distributed under the BSD open source license. |
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | 5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
6 # query sequence file: /tmp/tmpqydies2m/files/f/a/5/dataset_fa559c91-0436-48cb-a47d-20062d4af284.dat | 6 # query sequence file: /tmp/tmp2vk0_a8v/files/7/d/6/dataset_7d62e9c6-1db3-4a28-9770-d56c56ccfb17.dat |
7 # target HMM database: localref.hmm | 7 # target HMM database: localref.hmm |
8 # per-seq hits tabular output: /tmp/tmpqydies2m/files/4/7/2/dataset_4723128d-8711-4edb-8afe-a68476a6c127.dat | 8 # per-seq hits tabular output: /tmp/tmp2vk0_a8v/files/7/0/4/dataset_70487df9-4948-42c0-a250-638bcc64487a.dat |
9 # hits output in Dfam format: /tmp/tmpqydies2m/files/1/a/e/dataset_1aeea50b-1263-4750-8237-4fc3f10c0999.dat | 9 # hits output in Dfam format: /tmp/tmp2vk0_a8v/files/8/0/f/dataset_80fdcb47-0041-4a2c-bc0a-4820ac3c27d0.dat |
10 # max ASCII text line length: unlimited | 10 # max ASCII text line length: unlimited |
11 # Vit filter P threshold: <= 0.001 | 11 # Vit filter P threshold: <= 0.001 |
12 # Fwd filter P threshold: <= 1e-05 | 12 # Fwd filter P threshold: <= 1e-05 |
13 # random number seed set to: 4 | 13 # random number seed set to: 4 |
14 # number of worker threads: 1 | 14 # number of worker threads: 0 |
15 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - | 15 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - |
16 | 16 |
17 Query: humanchr1/239220001-239550000 [L=330000] | 17 Query: humanchr1/239220001-239550000 [L=330000] |
18 Scores for complete hit: | 18 Scores for complete hit: |
19 E-value score bias Model start end Description | 19 E-value score bias Model start end Description |
101 Residues passing SSV filter: 60770 (0.0921); expected (0.02) | 101 Residues passing SSV filter: 60770 (0.0921); expected (0.02) |
102 Residues passing bias filter: 35792 (0.0542); expected (0.02) | 102 Residues passing bias filter: 35792 (0.0542); expected (0.02) |
103 Residues passing Vit filter: 1612 (0.00244); expected (0.001) | 103 Residues passing Vit filter: 1612 (0.00244); expected (0.001) |
104 Residues passing Fwd filter: 1194 (0.00181); expected (1e-05) | 104 Residues passing Fwd filter: 1194 (0.00181); expected (1e-05) |
105 Total number of hits: 5 (0.000405) | 105 Total number of hits: 5 (0.000405) |
106 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 | 106 # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 |
107 # Mc/sec: 2289.06 | 107 # Mc/sec: 2765.21 |
108 // | 108 // |
109 [ok] | 109 [ok] |