Mercurial > repos > iuc > hmmer_hmmalign
comparison test-data/MADE1.out.pfamtblout @ 5:b2453ee52845 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author | iuc |
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date | Tue, 16 Jun 2020 05:29:04 -0400 |
parents | ca0b674e895b |
children | 24fa8e890f08 |
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4:ca0b674e895b | 5:b2453ee52845 |
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1 # Sequence scores | 1 # Sequence scores |
2 # --------------- | 2 # --------------- |
3 # | 3 # |
4 # name bits E-value n exp bias description | 4 # name bits E-value n exp bias description |
5 # ------------------- ------ --------- --- ----- ----- --------------------- | 5 # ------------------- ------ --------- --- ----- ----- --------------------- |
6 MADE1 51.8 5.7e-18 5 9.6 27.9 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon | 6 MADE1 51.2 9.3e-18 4 8.6 26.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon |
7 | 7 |
8 # Domain scores | 8 # Domain scores |
9 # ------------- | 9 # ------------- |
10 # | 10 # |
11 # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description | 11 # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description |
12 # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- | 12 # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- |
13 MADE1 34.1 2e-12 4 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon | 13 MADE1 34.8 1.3e-12 3 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon |
14 MADE1 27.4 2.4e-10 3 0.7 174456 174577 174456 174498 1 43 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon | 14 MADE1 27.4 2.4e-10 1 0.6 174456 174520 174456 174498 1 43 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon |
15 MADE1 2.8 0.011 5 0.7 304022 304109 304060 304107 27 75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon | 15 MADE1 1.4 0.033 4 0.4 304029 304108 304060 304106 27 74 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon |
16 MADE1 -4.5 1 1 0.0 80033 80072 80044 80068 30 54 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon | 16 MADE1 -8.4 1 2 5.8 197272 197342 197274 197341 12 79 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon |
17 MADE1 -6.6 1 2 3.3 154011 154076 154012 154072 13 71 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon | |
18 # | 17 # |
19 # Program: hmmscan | 18 # Program: hmmscan |
20 # Version: 3.2 (June 2018) | 19 # Version: 3.3 (Nov 2019) |
21 # Pipeline mode: SEARCH | 20 # Pipeline mode: SEARCH |
22 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat | 21 # Query file: /tmp/tmpqydies2m/files/5/d/3/dataset_5d34ccc7-9920-470e-9f13-678ab2ecd29d.dat |
23 # Target file: localref.hmm | 22 # Target file: localref.hmm |
24 # Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat | 23 # Option settings: hmmscan --tblout /tmp/tmpqydies2m/files/1/d/a/dataset_1da10e33-3e1c-48fc-abfb-7e3c263ec0df.dat --domtblout /tmp/tmpqydies2m/files/7/2/3/dataset_723f3cf1-e0de-4616-aec7-dd16680f3be3.dat --pfamtblout /tmp/tmpqydies2m/files/7/3/4/dataset_734c7f25-0a22-431b-9a7a-58849fcd6009.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpqydies2m/files/5/d/3/dataset_5d34ccc7-9920-470e-9f13-678ab2ecd29d.dat |
25 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working | 24 # Current dir: /tmp/tmpqydies2m/job_working_directory/000/8/working |
26 # Date: Fri Jun 8 12:17:53 2018 | 25 # Date: Thu May 14 18:53:22 2020 |
27 # [ok] | 26 # [ok] |