Mercurial > repos > iuc > hmmer_hmmbuild
comparison hmmbuild.xml @ 5:750269125dc9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
| author | iuc |
|---|---|
| date | Tue, 16 Jun 2020 05:38:16 -0400 |
| parents | 7ea31fc35394 |
| children | 6846f8789e33 |
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| 4:d0875d3f6544 | 5:750269125dc9 |
|---|---|
| 52 </outputs> | 52 </outputs> |
| 53 <tests> | 53 <tests> |
| 54 <test> | 54 <test> |
| 55 <param name="msafile" value="globins4.sto"/> | 55 <param name="msafile" value="globins4.sto"/> |
| 56 <expand macro="seed_test" /> | 56 <expand macro="seed_test" /> |
| 57 <output name="hmmout" file="globins4.hmm" lines_diff="10"/> | 57 <output name="hmmout" file="globins4.hmm" compare="sim_size"> |
| 58 <assert_contents> | |
| 59 <has_line_matching expression="HMMER3/f.*"/> | |
| 60 <has_line_matching expression="ALPH amino"/> | |
| 61 <has_line_matching expression="NSEQ 4"/> | |
| 62 <has_line_matching expression="//"/> | |
| 63 </assert_contents> | |
| 64 </output> | |
| 58 </test> | 65 </test> |
| 59 <test> | 66 <test> |
| 60 <param name="msafile" value="MADE1.sto"/> | 67 <param name="msafile" value="MADE1.sto"/> |
| 61 <param name="input_format_select" value="--dna"/> | 68 <param name="input_format_select" value="--dna"/> |
| 62 <expand macro="seed_test" /> | 69 <expand macro="seed_test" /> |
| 63 <output name="hmmout" file="MADE1.hmm" lines_diff="14"/> | 70 <output name="hmmout" file="MADE1.hmm" compare="sim_size"> |
| 71 <assert_contents> | |
| 72 <has_line_matching expression="HMMER3/f.*"/> | |
| 73 <has_line_matching expression="ALPH DNA"/> | |
| 74 <has_line_matching expression="NSEQ 1997"/> | |
| 75 <has_line_matching expression="//"/> | |
| 76 </assert_contents> | |
| 77 </output> | |
| 64 </test> | 78 </test> |
| 65 </tests> | 79 </tests> |
| 66 <help><![CDATA[ | 80 <help><![CDATA[ |
| 67 @HELP_PRE@ | 81 @HELP_PRE@ |
| 68 | 82 |