diff test-data/jackhmmer.domtblout @ 5:750269125dc9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:38:16 -0400
parents d0875d3f6544
children dc8860ba75d1
line wrap: on
line diff
--- a/test-data/jackhmmer.domtblout	Mon Jun 11 15:52:17 2018 -0400
+++ b/test-data/jackhmmer.domtblout	Tue Jun 16 05:38:16 2020 -0400
@@ -46,58 +46,58 @@
 HBA4_SALIR           -            142 sp|P02185|MYG_PHYCD  -            154   5.3e-56  180.0   0.1   1   1   5.9e-56   5.9e-56  179.9   0.1     3   148     2   142     1   142 0.99 -
 MYG_MUSAN            -            148 sp|P02185|MYG_PHYCD  -            154   2.5e-54  174.6   0.4   1   1   2.8e-54   2.8e-54  174.5   0.4     7   154     2   148     1   148 0.99 -
 HBB2_TRICR           -            145 sp|P02185|MYG_PHYCD  -            154     2e-52  168.4   0.0   1   1   2.2e-52   2.2e-52  168.3   0.0     3   147     3   145     1   145 0.99 -
-HBB_MANSP            -            146 sp|P02024|HBB_GORGO  -            147   3.6e-74  238.9   0.1   1   1     4e-74     4e-74  238.8   0.1     2   147     1   146     1   146 1.00 -
-HBB_URSMA            -            146 sp|P02024|HBB_GORGO  -            147   1.7e-73  236.7   0.3   1   1   1.9e-73   1.9e-73  236.6   0.3     2   147     1   146     1   146 1.00 -
-HBB_RABIT            -            146 sp|P02024|HBB_GORGO  -            147   2.2e-72  233.1   0.8   1   1   2.4e-72   2.4e-72  233.0   0.8     2   147     1   146     1   146 1.00 -
-HBB_SUNMU            -            146 sp|P02024|HBB_GORGO  -            147   5.4e-72  231.8   0.1   1   1     6e-72     6e-72  231.7   0.1     2   147     1   146     1   146 1.00 -
-HBB_CALAR            -            146 sp|P02024|HBB_GORGO  -            147     7e-72  231.5   0.2   1   1   7.7e-72   7.7e-72  231.3   0.2     2   147     1   146     1   146 1.00 -
-HBB_COLLI            -            146 sp|P02024|HBB_GORGO  -            147   9.6e-72  231.0   0.0   1   1   1.1e-71   1.1e-71  230.9   0.0     2   147     1   146     1   146 1.00 -
-HBB_TACAC            -            146 sp|P02024|HBB_GORGO  -            147   2.5e-71  229.7   0.4   1   1   2.8e-71   2.8e-71  229.6   0.4     2   147     1   146     1   146 1.00 -
-HBE_PONPY            -            146 sp|P02024|HBB_GORGO  -            147   4.8e-71  228.8   0.4   1   1   5.3e-71   5.3e-71  228.6   0.4     2   147     1   146     1   146 1.00 -
-HBB_EQUHE            -            146 sp|P02024|HBB_GORGO  -            147   5.1e-71  228.7   0.2   1   1   5.7e-71   5.7e-71  228.5   0.2     2   147     1   146     1   146 0.99 -
-HBB_SPECI            -            146 sp|P02024|HBB_GORGO  -            147   1.3e-70  227.3   1.0   1   1   1.5e-70   1.5e-70  227.2   1.0     2   147     1   146     1   146 1.00 -
-HBB_SPETO            -            146 sp|P02024|HBB_GORGO  -            147     2e-70  226.8   0.6   1   1   2.2e-70   2.2e-70  226.6   0.6     2   147     1   146     1   146 1.00 -
-HBB_TRIIN            -            146 sp|P02024|HBB_GORGO  -            147   3.7e-70  225.9   0.1   1   1   4.1e-70   4.1e-70  225.8   0.1     2   147     1   146     1   146 1.00 -
-HBB_ORNAN            -            146 sp|P02024|HBB_GORGO  -            147   4.1e-70  225.7   0.0   1   1   4.6e-70   4.6e-70  225.6   0.0     2   147     1   146     1   146 1.00 -
-HBB_LARRI            -            146 sp|P02024|HBB_GORGO  -            147   5.7e-70  225.3   0.0   1   1   6.4e-70   6.4e-70  225.1   0.0     2   147     1   146     1   146 1.00 -
-HBB_TUPGL            -            146 sp|P02024|HBB_GORGO  -            147   1.8e-68  220.5   0.0   1   1   1.9e-68   1.9e-68  220.3   0.0     2   147     1   146     1   146 1.00 -
-HBB1_VAREX           -            146 sp|P02024|HBB_GORGO  -            147   1.5e-67  217.4   0.1   1   1   1.7e-67   1.7e-67  217.3   0.1     2   147     1   146     1   146 1.00 -
-HBBL_RANCA           -            146 sp|P02024|HBB_GORGO  -            147   7.8e-64  205.4   0.3   1   1   8.7e-64   8.7e-64  205.2   0.3     2   147     1   146     1   146 1.00 -
-HBA_MESAU            -            141 sp|P02024|HBB_GORGO  -            147   4.5e-63  202.9   0.3   1   1     5e-63     5e-63  202.8   0.3     4   146     2   140     1   141 0.99 -
-HBB2_XENTR           -            146 sp|P02024|HBB_GORGO  -            147     2e-62  200.8   0.8   1   1   2.3e-62   2.3e-62  200.6   0.8     2   146     1   145     1   146 1.00 -
-HBA_PONPY            -            141 sp|P02024|HBB_GORGO  -            147   4.6e-62  199.6   0.7   1   1     5e-62     5e-62  199.5   0.7     4   146     2   140     1   141 0.98 -
-HBA_MACFA            -            141 sp|P02024|HBB_GORGO  -            147   8.7e-62  198.7   0.3   1   1   9.6e-62   9.6e-62  198.6   0.3     4   146     2   140     1   141 0.99 -
-HBA_MACSI            -            141 sp|P02024|HBB_GORGO  -            147   1.3e-61  198.2   0.3   1   1   1.4e-61   1.4e-61  198.1   0.3     4   146     2   140     1   141 0.99 -
-HBA_AILME            -            141 sp|P02024|HBB_GORGO  -            147   2.1e-61  197.5   0.1   1   1   2.4e-61   2.4e-61  197.3   0.1     4   146     2   140     1   141 0.99 -
-HBA2_GALCR           -            141 sp|P02024|HBB_GORGO  -            147   6.6e-61  195.9   0.6   1   1   7.3e-61   7.3e-61  195.7   0.6     4   146     2   140     1   141 0.98 -
-HBA_FRAPO            -            141 sp|P02024|HBB_GORGO  -            147   7.1e-61  195.8   0.4   1   1   7.8e-61   7.8e-61  195.7   0.4     4   146     2   140     1   141 0.98 -
-HBA_PHACO            -            141 sp|P02024|HBB_GORGO  -            147   7.3e-61  195.7   0.4   1   1     8e-61     8e-61  195.6   0.4     4   146     2   140     1   141 0.99 -
-HBA2_BOSMU           -            141 sp|P02024|HBB_GORGO  -            147   7.6e-61  195.7   0.4   1   1   8.3e-61   8.3e-61  195.6   0.4     4   146     2   140     1   141 0.99 -
-HBA_ERIEU            -            141 sp|P02024|HBB_GORGO  -            147   2.4e-60  194.0   0.1   1   1   2.7e-60   2.7e-60  193.9   0.1     4   146     2   140     1   141 0.98 -
-HBA_PROLO            -            141 sp|P02024|HBB_GORGO  -            147   3.3e-60  193.6   0.0   1   1   3.6e-60   3.6e-60  193.5   0.0     4   146     2   140     1   141 0.99 -
-HBA_ANSSE            -            141 sp|P02024|HBB_GORGO  -            147   3.9e-60  193.4   0.4   1   1   4.3e-60   4.3e-60  193.2   0.4     4   146     2   140     1   141 0.99 -
-HBA_PAGLA            -            141 sp|P02024|HBB_GORGO  -            147   4.1e-60  193.3   0.5   1   1   4.5e-60   4.5e-60  193.2   0.5     4   146     2   140     1   141 0.98 -
-HBA_TRIOC            -            141 sp|P02024|HBB_GORGO  -            147   2.7e-59  190.7   0.5   1   1   2.9e-59   2.9e-59  190.5   0.5     4   146     2   140     1   141 0.98 -
-HBAD_CHLME           -            141 sp|P02024|HBB_GORGO  -            147   6.3e-59  189.4   0.5   1   1     7e-59     7e-59  189.3   0.5     4   146     2   140     1   141 0.98 -
-HBAZ_HORSE           -            141 sp|P02024|HBB_GORGO  -            147   7.5e-59  189.2   0.1   1   1   8.2e-59   8.2e-59  189.1   0.1     4   146     2   140     1   141 0.98 -
-HBA_COLLI            -            141 sp|P02024|HBB_GORGO  -            147   1.6e-58  188.1   0.2   1   1   1.8e-58   1.8e-58  188.0   0.2     4   146     2   140     1   141 0.98 -
-HBAD_PASMO           -            141 sp|P02024|HBB_GORGO  -            147     2e-58  187.8   0.1   1   1   2.2e-58   2.2e-58  187.7   0.1     4   146     2   140     1   141 0.98 -
-MYG_SAISC            -            153 sp|P02024|HBB_GORGO  -            147   2.9e-57  184.1   1.0   1   1   3.2e-57   3.2e-57  183.9   1.0     4   146     2   146     1   147 0.98 -
-MYG_LYCPI            -            153 sp|P02024|HBB_GORGO  -            147     3e-57  184.0   1.9   1   1   3.3e-57   3.3e-57  183.9   1.9     4   146     2   146     1   147 0.97 -
-MYG_PROGU            -            153 sp|P02024|HBB_GORGO  -            147   8.3e-57  182.6   0.2   1   1   9.2e-57   9.2e-57  182.4   0.2     4   146     2   146     1   147 0.97 -
-MYG_ESCGI            -            153 sp|P02024|HBB_GORGO  -            147   8.8e-57  182.5   2.3   1   1   9.7e-57   9.7e-57  182.4   2.3     4   146     2   146     1   147 0.97 -
-MYG_HORSE            -            153 sp|P02024|HBB_GORGO  -            147   2.5e-56  181.0   1.0   1   1   2.7e-56   2.7e-56  180.9   1.0     4   146     2   146     1   147 0.97 -
-MYG_MOUSE            -            153 sp|P02024|HBB_GORGO  -            147   4.7e-56  180.1   0.3   1   1   5.2e-56   5.2e-56  180.0   0.3     4   146     2   146     1   147 0.97 -
-HBA4_SALIR           -            142 sp|P02024|HBB_GORGO  -            147   7.5e-56  179.5   0.1   1   1   8.3e-56   8.3e-56  179.3   0.1     4   146     2   141     1   142 0.98 -
-HBB2_TRICR           -            145 sp|P02024|HBB_GORGO  -            147   2.7e-55  177.7   0.0   1   1     3e-55     3e-55  177.5   0.0     2   146     1   145     1   145 1.00 -
-MYG_MUSAN            -            148 sp|P02024|HBB_GORGO  -            147   4.6e-45  144.5   0.3   1   1   5.1e-45   5.1e-45  144.3   0.3     8   146     2   141     1   142 0.96 -
+HBB_MANSP            -            146 sp|P02024|HBB_GORGO  -            147   2.3e-75  242.8   0.1   1   1   2.6e-75   2.6e-75  242.6   0.1     2   147     1   146     1   146 1.00 -
+HBB_URSMA            -            146 sp|P02024|HBB_GORGO  -            147   1.1e-74  240.6   0.3   1   1   1.2e-74   1.2e-74  240.5   0.3     2   147     1   146     1   146 1.00 -
+HBB_RABIT            -            146 sp|P02024|HBB_GORGO  -            147   1.4e-73  237.0   0.9   1   1   1.5e-73   1.5e-73  236.9   0.9     2   147     1   146     1   146 1.00 -
+HBB_CALAR            -            146 sp|P02024|HBB_GORGO  -            147   4.1e-73  235.5   0.2   1   1   4.5e-73   4.5e-73  235.4   0.2     2   147     1   146     1   146 1.00 -
+HBB_SUNMU            -            146 sp|P02024|HBB_GORGO  -            147   4.2e-73  235.4   0.1   1   1   4.7e-73   4.7e-73  235.3   0.1     2   147     1   146     1   146 1.00 -
+HBB_COLLI            -            146 sp|P02024|HBB_GORGO  -            147   7.8e-73  234.6   0.0   1   1   8.7e-73   8.7e-73  234.4   0.0     2   147     1   146     1   146 1.00 -
+HBB_TACAC            -            146 sp|P02024|HBB_GORGO  -            147   1.9e-72  233.3   0.4   1   1   2.1e-72   2.1e-72  233.2   0.4     2   147     1   146     1   146 1.00 -
+HBE_PONPY            -            146 sp|P02024|HBB_GORGO  -            147   3.1e-72  232.6   0.4   1   1   3.4e-72   3.4e-72  232.5   0.4     2   147     1   146     1   146 1.00 -
+HBB_EQUHE            -            146 sp|P02024|HBB_GORGO  -            147   3.5e-72  232.5   0.2   1   1   3.8e-72   3.8e-72  232.3   0.2     2   147     1   146     1   146 0.99 -
+HBB_SPECI            -            146 sp|P02024|HBB_GORGO  -            147   1.1e-71  230.8   1.0   1   1   1.3e-71   1.3e-71  230.7   1.0     2   147     1   146     1   146 1.00 -
+HBB_SPETO            -            146 sp|P02024|HBB_GORGO  -            147   1.6e-71  230.3   0.6   1   1   1.7e-71   1.7e-71  230.2   0.6     2   147     1   146     1   146 1.00 -
+HBB_TRIIN            -            146 sp|P02024|HBB_GORGO  -            147   2.6e-71  229.6   0.1   1   1   2.9e-71   2.9e-71  229.5   0.1     2   147     1   146     1   146 1.00 -
+HBB_ORNAN            -            146 sp|P02024|HBB_GORGO  -            147   2.9e-71  229.5   0.0   1   1   3.2e-71   3.2e-71  229.4   0.0     2   147     1   146     1   146 1.00 -
+HBB_LARRI            -            146 sp|P02024|HBB_GORGO  -            147   5.2e-71  228.7   0.0   1   1   5.7e-71   5.7e-71  228.5   0.0     2   147     1   146     1   146 1.00 -
+HBB_TUPGL            -            146 sp|P02024|HBB_GORGO  -            147   1.1e-69  224.3   0.0   1   1   1.3e-69   1.3e-69  224.2   0.0     2   147     1   146     1   146 1.00 -
+HBB1_VAREX           -            146 sp|P02024|HBB_GORGO  -            147   1.5e-68  220.7   0.1   1   1   1.6e-68   1.6e-68  220.5   0.1     2   147     1   146     1   146 1.00 -
+HBBL_RANCA           -            146 sp|P02024|HBB_GORGO  -            147   7.6e-65  208.7   0.3   1   1   8.5e-65   8.5e-65  208.5   0.3     2   147     1   146     1   146 1.00 -
+HBB2_XENTR           -            146 sp|P02024|HBB_GORGO  -            147   2.5e-63  203.7   0.9   1   1   2.8e-63   2.8e-63  203.6   0.9     2   146     1   145     1   146 1.00 -
+HBA_MESAU            -            141 sp|P02024|HBB_GORGO  -            147   6.9e-63  202.3   0.3   1   1   7.5e-63   7.5e-63  202.2   0.3     4   146     2   140     1   141 0.99 -
+HBA_PONPY            -            141 sp|P02024|HBB_GORGO  -            147   1.1e-61  198.4   0.7   1   1   1.2e-61   1.2e-61  198.3   0.7     4   146     2   140     1   141 0.98 -
+HBA_MACFA            -            141 sp|P02024|HBB_GORGO  -            147   1.8e-61  197.7   0.3   1   1   1.9e-61   1.9e-61  197.6   0.3     4   146     2   140     1   141 0.99 -
+HBA_MACSI            -            141 sp|P02024|HBB_GORGO  -            147   2.6e-61  197.2   0.3   1   1   2.8e-61   2.8e-61  197.1   0.3     4   146     2   140     1   141 0.99 -
+HBA_AILME            -            141 sp|P02024|HBB_GORGO  -            147   3.6e-61  196.8   0.1   1   1   3.9e-61   3.9e-61  196.6   0.1     4   146     2   140     1   141 0.99 -
+HBA_PHACO            -            141 sp|P02024|HBB_GORGO  -            147   1.2e-60  195.1   0.4   1   1   1.3e-60   1.3e-60  194.9   0.4     4   146     2   140     1   141 0.99 -
+HBA2_BOSMU           -            141 sp|P02024|HBB_GORGO  -            147   1.2e-60  195.1   0.4   1   1   1.3e-60   1.3e-60  194.9   0.4     4   146     2   140     1   141 0.99 -
+HBA_FRAPO            -            141 sp|P02024|HBB_GORGO  -            147   1.2e-60  195.0   0.4   1   1   1.4e-60   1.4e-60  194.9   0.4     4   146     2   140     1   141 0.98 -
+HBA2_GALCR           -            141 sp|P02024|HBB_GORGO  -            147   1.4e-60  194.8   0.6   1   1   1.6e-60   1.6e-60  194.7   0.6     4   146     2   140     1   141 0.98 -
+HBA_ERIEU            -            141 sp|P02024|HBB_GORGO  -            147   4.5e-60  193.2   0.1   1   1   4.9e-60   4.9e-60  193.1   0.1     4   146     2   140     1   141 0.98 -
+HBA_PROLO            -            141 sp|P02024|HBB_GORGO  -            147   5.1e-60  193.0   0.0   1   1   5.6e-60   5.6e-60  192.9   0.0     4   146     2   140     1   141 0.99 -
+HBA_ANSSE            -            141 sp|P02024|HBB_GORGO  -            147   7.4e-60  192.5   0.4   1   1   8.1e-60   8.1e-60  192.3   0.4     4   146     2   140     1   141 0.99 -
+HBA_PAGLA            -            141 sp|P02024|HBB_GORGO  -            147   7.4e-60  192.5   0.5   1   1   8.1e-60   8.1e-60  192.3   0.5     4   146     2   140     1   141 0.98 -
+HBA_TRIOC            -            141 sp|P02024|HBB_GORGO  -            147   4.5e-59  189.9   0.5   1   1     5e-59     5e-59  189.8   0.5     4   146     2   140     1   141 0.98 -
+HBAD_CHLME           -            141 sp|P02024|HBB_GORGO  -            147     6e-59  189.5   0.5   1   1   6.6e-59   6.6e-59  189.4   0.5     4   146     2   140     1   141 0.98 -
+HBAZ_HORSE           -            141 sp|P02024|HBB_GORGO  -            147   2.2e-58  187.7   0.1   1   1   2.5e-58   2.5e-58  187.5   0.1     4   146     2   140     1   141 0.98 -
+HBAD_PASMO           -            141 sp|P02024|HBB_GORGO  -            147   2.4e-58  187.6   0.1   1   1   2.7e-58   2.7e-58  187.4   0.1     4   146     2   140     1   141 0.98 -
+HBA_COLLI            -            141 sp|P02024|HBB_GORGO  -            147   2.5e-58  187.5   0.2   1   1   2.8e-58   2.8e-58  187.4   0.2     4   146     2   140     1   141 0.98 -
+HBB2_TRICR           -            145 sp|P02024|HBB_GORGO  -            147   1.9e-56  181.4   0.0   1   1   2.2e-56   2.2e-56  181.2   0.0     2   146     1   145     1   145 1.00 -
+HBA4_SALIR           -            142 sp|P02024|HBB_GORGO  -            147   5.3e-56  180.0   0.1   1   1   5.8e-56   5.8e-56  179.8   0.1     4   146     2   141     1   142 0.98 -
+MYG_LYCPI            -            153 sp|P02024|HBB_GORGO  -            147   9.5e-56  179.1   1.8   1   1   1.1e-55   1.1e-55  179.0   1.8     4   146     2   146     1   147 0.97 -
+MYG_SAISC            -            153 sp|P02024|HBB_GORGO  -            147   1.3e-55  178.7   1.0   1   1   1.4e-55   1.4e-55  178.6   1.0     4   146     2   146     1   147 0.98 -
+MYG_ESCGI            -            153 sp|P02024|HBB_GORGO  -            147   3.1e-55  177.5   2.2   1   1   3.4e-55   3.4e-55  177.3   2.2     4   146     2   146     1   147 0.97 -
+MYG_PROGU            -            153 sp|P02024|HBB_GORGO  -            147   5.1e-55  176.8   0.2   1   1   5.7e-55   5.7e-55  176.6   0.2     4   146     2   146     1   147 0.97 -
+MYG_HORSE            -            153 sp|P02024|HBB_GORGO  -            147   9.3e-55  175.9   1.0   1   1     1e-54     1e-54  175.8   1.0     4   146     2   146     1   147 0.97 -
+MYG_MOUSE            -            153 sp|P02024|HBB_GORGO  -            147   1.4e-54  175.3   0.3   1   1   1.6e-54   1.6e-54  175.2   0.3     4   146     2   146     1   147 0.97 -
+MYG_MUSAN            -            148 sp|P02024|HBB_GORGO  -            147   1.6e-44  142.7   0.3   1   1   1.8e-44   1.8e-44  142.6   0.3     8   146     2   141     1   142 0.96 -
 #
 # Program:         jackhmmer
-# Version:         3.2 (June 2018)
+# Version:         3.3 (Nov 2019)
 # Pipeline mode:   SEARCH
-# Query file:      /tmp/tmpw5_nj0/files/000/dataset_1.dat
-# Target file:     /tmp/tmpw5_nj0/files/000/dataset_2.dat
-# Option settings: jackhmmer -N 5 --tblout /tmp/tmpw5_nj0/files/000/dataset_4.dat --domtblout /tmp/tmpw5_nj0/files/000/dataset_5.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpw5_nj0/files/000/dataset_1.dat /tmp/tmpw5_nj0/files/000/dataset_2.dat 
-# Current dir:     /tmp/tmpw5_nj0/job_working_directory/000/3/working
-# Date:            Mon Jun 11 17:59:06 2018
+# Query file:      /tmp/tmpfvu1k4r6/files/e/a/d/dataset_ead1ef79-dd40-459b-b072-01fc401e229a.dat
+# Target file:     /tmp/tmpfvu1k4r6/files/c/9/e/dataset_c9eb6990-14c2-41da-9304-1bdf155f29e9.dat
+# Option settings: jackhmmer -N 5 --tblout /tmp/tmpfvu1k4r6/files/c/c/a/dataset_cca87e56-6fd4-49f3-b29f-dca9b665fb4e.dat --domtblout /tmp/tmpfvu1k4r6/files/a/9/3/dataset_a93530ef-2a8d-4611-9764-b317aa42a6b4.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmpfvu1k4r6/files/e/a/d/dataset_ead1ef79-dd40-459b-b072-01fc401e229a.dat /tmp/tmpfvu1k4r6/files/c/9/e/dataset_c9eb6990-14c2-41da-9304-1bdf155f29e9.dat 
+# Current dir:     /tmp/tmpfvu1k4r6/job_working_directory/000/3/working
+# Date:            Thu May 14 18:30:01 2020
 # [ok]