Mercurial > repos > iuc > hmmer_hmmbuild
diff readme.rst @ 0:fb8582aff5db draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
author | iuc |
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date | Sat, 25 Jun 2016 15:04:58 -0400 |
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children | 3033a7092b3e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Sat Jun 25 15:04:58 2016 -0400 @@ -0,0 +1,54 @@ +Galaxy wrapper for HMMER3 +========================= + +This wrapper is copyright 2015 by Eric Rasche + +HMMER is used for searching sequence databases for homologs of protein +sequences, and for making protein sequence alignments. It implements methods +using probabilistic models called profile hidden Markov models (profile HMMs). + +Compared to BLAST, FASTA, and other sequence alignment and database search +tools based on older scoring methodology, HMMER aims to be significantly more +accurate and more able to detect remote homologs because of the strength of its +underlying mathematical models. In the past, this strength came at significant +computational expense, but in the new HMMER3 project, HMMER is now essentially +as fast as BLAST. + +http://hmmer.janelia.org/ +http://hmmer.janelia.org/about + + +Installation +============ + +The recommended installation is by means of the toolshed_. + +.. _toolshed: http://toolshed.g2.bx.psu.edu/view/iuc/hmmer3 + + +History +======= + +* v0.1 - Initial public release + + +Licence (MIT) +============= + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE.