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view test-data/MADE1.out.pfamtblout @ 4:d0875d3f6544 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author iuc
date Mon, 11 Jun 2018 15:52:17 -0400
parents fb8582aff5db
children 750269125dc9
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# Sequence scores
# ---------------
#
# name                  bits   E-value   n   exp  bias    description
# ------------------- ------ --------- --- ----- -----    ---------------------
MADE1                   51.8   5.7e-18   5   9.6  27.9    MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon

# Domain scores
# -------------
#
#  name                 bits   E-value   hit  bias env-st env-en ali-st ali-en hmm-st hmm-en     description
# ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------      ---------------------
MADE1                   34.1     2e-12     4   0.7 302387 302466 302388 302466      2     80     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                   27.4   2.4e-10     3   0.7 174456 174577 174456 174498      1     43     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                    2.8     0.011     5   0.7 304022 304109 304060 304107     27     75     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                   -4.5         1     1   0.0  80033  80072  80044  80068     30     54     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
MADE1                   -6.6         1     2   3.3 154011 154076 154012 154072     13     71     MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
#
# Program:         hmmscan
# Version:         3.2 (June 2018)
# Pipeline mode:   SEARCH
# Query file:      /tmp/tmpp4O0Ju/files/000/dataset_20.dat
# Target file:     localref.hmm
# Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat 
# Current dir:     /tmp/tmpp4O0Ju/job_working_directory/000/21/working
# Date:            Fri Jun  8 12:17:53 2018
# [ok]