hmmer_hmmconvert: test-data/MADE1.out.tblout annotate

annotate test-data/MADE1.out.tblout @ 4:f92edeb5e4c4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d

author	iuc
date	Mon, 11 Jun 2018 15:52:53 -0400
parents	dca536c5cca5
children	8d5ec58d2172

rev	line source
0 dca536c5cca5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47 iuc parents: diff changeset	1 # --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
dca536c5cca5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47 iuc parents: diff changeset	2 # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target
dca536c5cca5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47 iuc parents: diff changeset	3 #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- ---------------------
4 f92edeb5e4c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d iuc parents: 0 diff changeset	4 MADE1 DF0000629.2 humanchr1/239220001-239550000 - 5.7e-18 51.8 27.9 2e-12 34.1 0.7 9.6 5 0 0 5 5 5 2 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
0 dca536c5cca5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47 iuc parents: diff changeset	5 #
dca536c5cca5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47 iuc parents: diff changeset	6 # Program: hmmscan
4 f92edeb5e4c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d iuc parents: 0 diff changeset	7 # Version: 3.2 (June 2018)
0 dca536c5cca5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47 iuc parents: diff changeset	8 # Pipeline mode: SCAN
4 f92edeb5e4c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d iuc parents: 0 diff changeset	9 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat
f92edeb5e4c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d iuc parents: 0 diff changeset	10 # Target file: localref.hmm
f92edeb5e4c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d iuc parents: 0 diff changeset	11 # Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat
f92edeb5e4c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d iuc parents: 0 diff changeset	12 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working
f92edeb5e4c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d iuc parents: 0 diff changeset	13 # Date: Fri Jun 8 12:17:53 2018
0 dca536c5cca5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47 iuc parents: diff changeset	14 # [ok]