Mercurial > repos > iuc > hmmer_hmmconvert

comparison test-data/MADE1.out.pfamtblout @ 5:8d5ec58d2172 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:37:52 -0400
parents f92edeb5e4c4
children db8a5a3195e7
comparison
equal deleted inserted replaced
4:f92edeb5e4c4 5:8d5ec58d2172
1 # Sequence scores 1 # Sequence scores
2 # --------------- 2 # ---------------
3 # 3 #
4 # name bits E-value n exp bias description 4 # name bits E-value n exp bias description
5 # ------------------- ------ --------- --- ----- ----- --------------------- 5 # ------------------- ------ --------- --- ----- ----- ---------------------
6 MADE1 51.8 5.7e-18 5 9.6 27.9 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 6 MADE1 51.2 9.3e-18 4 8.6 26.3 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
7 7
8 # Domain scores 8 # Domain scores
9 # ------------- 9 # -------------
10 # 10 #
11 # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description 11 # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description
12 # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- 12 # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ ---------------------
13 MADE1 34.1 2e-12 4 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 13 MADE1 34.8 1.3e-12 3 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
14 MADE1 27.4 2.4e-10 3 0.7 174456 174577 174456 174498 1 43 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 14 MADE1 27.4 2.4e-10 1 0.6 174456 174520 174456 174498 1 43 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
15 MADE1 2.8 0.011 5 0.7 304022 304109 304060 304107 27 75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 15 MADE1 1.4 0.033 4 0.4 304029 304108 304060 304106 27 74 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
16 MADE1 -4.5 1 1 0.0 80033 80072 80044 80068 30 54 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 16 MADE1 -8.4 1 2 5.8 197272 197342 197274 197341 12 79 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
17 MADE1 -6.6 1 2 3.3 154011 154076 154012 154072 13 71 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
18 # 17 #
19 # Program: hmmscan 18 # Program: hmmscan
20 # Version: 3.2 (June 2018) 19 # Version: 3.3 (Nov 2019)
21 # Pipeline mode: SEARCH 20 # Pipeline mode: SEARCH
22 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat 21 # Query file: /tmp/tmpqydies2m/files/5/d/3/dataset_5d34ccc7-9920-470e-9f13-678ab2ecd29d.dat
23 # Target file: localref.hmm 22 # Target file: localref.hmm
24 # Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat 23 # Option settings: hmmscan --tblout /tmp/tmpqydies2m/files/1/d/a/dataset_1da10e33-3e1c-48fc-abfb-7e3c263ec0df.dat --domtblout /tmp/tmpqydies2m/files/7/2/3/dataset_723f3cf1-e0de-4616-aec7-dd16680f3be3.dat --pfamtblout /tmp/tmpqydies2m/files/7/3/4/dataset_734c7f25-0a22-431b-9a7a-58849fcd6009.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpqydies2m/files/5/d/3/dataset_5d34ccc7-9920-470e-9f13-678ab2ecd29d.dat
25 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working 24 # Current dir: /tmp/tmpqydies2m/job_working_directory/000/8/working
26 # Date: Fri Jun 8 12:17:53 2018 25 # Date: Thu May 14 18:53:22 2020
27 # [ok] 26 # [ok]