Mercurial > repos > iuc > hmmer_hmmconvert

comparison test-data/MADE1.hmm @ 0:dca536c5cca5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
author iuc
date Sat, 25 Jun 2016 15:05:21 -0400
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children f92edeb5e4c4
comparison
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-1:000000000000 0:dca536c5cca5
1 HMMER3/f [3.1b2 | February 2015]
2 NAME MADE1
3 ACC DF0000629.2
4 DESC MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
5 LENG 80
6 MAXL 425
7 ALPH DNA
8 RF yes
9 MM no
10 CONS yes
11 CS no
12 MAP yes
13 DATE Sat Jun 25 17:24:24 2016
14 NSEQ 1997
15 EFFN 3.911818
16 CKSUM 3015610723
17 STATS LOCAL MSV -8.5408 0.71858
18 STATS LOCAL VITERBI -9.6224 0.71858
19 STATS LOCAL FORWARD -3.4150 0.71858
20 HMM A C G T
21 m->m m->i m->d i->m i->i d->m d->d
22 COMPO 1.24533 1.59094 1.62722 1.16493
23 1.38629 1.38629 1.38629 1.38629
24 0.21058 4.11281 1.75146 1.46634 0.26236 0.00000 *
25 1 2.69765 2.44396 2.81521 0.24089 1 t x - -
26 1.38629 1.38629 1.38629 1.38629
27 0.03960 3.94183 3.94183 1.46634 0.26236 1.10301 0.40327
28 2 2.72939 2.37873 2.85832 0.24244 2 t x - -
29 1.38629 1.38629 1.38629 1.38629
30 0.03725 4.00179 4.00179 1.46634 0.26236 1.21367 0.35255
31 3 0.16099 3.16370 2.87328 2.99734 3 a x - -
32 1.38629 1.38629 1.38629 1.38629
33 0.03604 4.03416 4.03416 1.46634 0.26236 1.32877 0.30762
34 4 1.98862 2.42132 0.42649 2.10770 4 g x - -
35 1.38629 1.38629 1.38629 1.38629
36 0.03539 4.05203 4.05203 1.46634 0.26236 1.35213 0.29933
37 5 1.96369 2.69532 0.36534 2.32099 5 g x - -
38 1.38629 1.38629 1.38629 1.38629
39 0.03764 4.06427 3.92372 1.46634 0.26236 1.00259 0.45717
40 6 2.56994 2.11239 2.71946 0.30571 6 t x - -
41 1.37159 1.41129 1.39124 1.37159
42 0.03806 3.89715 4.07214 1.50442 0.25122 1.12269 0.39364
43 7 2.58388 2.10353 2.64646 0.31253 12 t x - -
44 1.38764 1.38524 1.38764 1.38465
45 0.03494 4.03864 4.09125 1.40070 0.28293 1.44046 0.27026
46 8 2.18552 2.70201 0.28821 2.64645 14 g x - -
47 1.38629 1.38629 1.38629 1.38629
48 0.03628 4.09157 3.96779 1.46634 0.26236 1.26997 0.32967
49 9 2.16916 2.82142 0.28427 2.60854 15 g x - -
50 1.38091 1.39033 1.38365 1.39033
51 0.03566 4.00237 4.08886 1.38021 0.28972 1.26961 0.32981
52 10 2.45517 2.15232 2.42886 0.34277 18 t x - -
53 1.39065 1.39065 1.39065 1.37335
54 0.03536 4.01212 4.09576 1.39554 0.28462 1.25024 0.33748
55 11 2.10260 2.95484 0.28160 2.64222 21 g x - -
56 1.36740 1.40555 1.40555 1.36740
57 0.03843 3.92069 4.02468 1.44733 0.26814 1.15789 0.37709
58 12 2.54740 0.30185 2.61355 2.21647 26 c x - -
59 1.38748 1.38276 1.38748 1.38748
60 0.03457 4.05446 4.09623 1.40847 0.28040 1.17686 0.36852
61 13 0.28443 2.72003 2.32214 2.48149 28 a x - -
62 1.38740 1.38740 1.38298 1.38740
63 0.03441 4.05976 4.10001 1.41198 0.27926 0.97690 0.47237
64 14 0.29412 2.55413 2.49679 2.35701 30 a x - -
65 1.38194 1.39067 1.38194 1.39067
66 0.03505 4.02482 4.10005 1.39522 0.28473 1.16906 0.37202
67 15 0.18837 2.99710 2.82270 2.77556 33 a x - -
68 1.39015 1.39472 1.37503 1.38539
69 0.03725 3.97815 4.02618 1.37955 0.28994 1.16870 0.37218
70 16 0.50816 2.05151 2.22111 1.82407 37 a x - -
71 1.36727 1.38730 1.39683 1.39405
72 0.04830 3.89881 3.61610 1.29026 0.32186 1.08301 0.41336
73 17 2.11260 2.73141 0.29747 2.64152 41 g x - -
74 1.36913 1.40376 1.40376 1.36913
75 0.03705 3.93681 4.08299 1.44872 0.26771 1.09472 0.40742
76 18 2.24459 1.90539 2.34054 0.43234 46 t x - -
77 1.33632 1.42493 1.39937 1.38665
78 0.04427 3.64574 4.06297 1.70501 0.20061 1.19872 0.35894
79 19 0.44322 2.17202 2.18055 2.03175 57 a x - -
80 1.41047 1.41471 1.36338 1.35797
81 0.03970 3.81957 4.07540 1.65588 0.21186 1.24390 0.34004
82 20 0.33340 2.42691 2.40824 2.25160 66 a x - -
83 1.29389 1.44615 1.37917 1.43324
84 0.04223 3.70146 4.09459 1.55158 0.23815 1.01872 0.44794
85 21 2.50563 1.98543 2.69600 0.33746 74 t x - -
86 1.39462 1.39462 1.42862 1.32990
87 0.04184 3.80216 3.98177 1.80466 0.17976 1.00279 0.45705
88 22 2.54484 1.97505 2.66483 0.33806 84 t x - -
89 1.39134 1.39489 1.38662 1.37246
90 0.03877 3.97504 3.95038 1.37620 0.29107 1.13932 0.38572
91 23 2.10159 2.83856 0.29282 2.61635 88 g x - -
92 1.39682 1.39682 1.35536 1.39682
93 0.05046 3.75402 3.65808 1.08330 0.41321 1.13019 0.39004
94 24 2.25298 0.61854 2.50691 1.29221 90 c x - -
95 1.35803 1.49605 1.46737 1.24379
96 0.06091 3.28322 3.83564 1.89752 0.16245 1.28788 0.32276
97 25 1.27819 2.23285 0.76242 1.91259 106 g x - -
98 1.29024 1.67349 1.68279 1.04597
99 0.05752 3.44263 3.73311 2.58671 0.07825 1.26818 0.33037
100 26 1.86925 2.58352 0.39466 2.33986 131 g x - -
101 1.31084 1.49412 1.46666 1.29002
102 0.04698 3.54257 4.07715 2.25245 0.11109 0.86163 0.54900
103 27 2.38297 1.93394 2.39162 0.39800 151 t x - -
104 1.33582 1.47359 1.44163 1.30411
105 0.04951 3.48445 4.03783 2.15951 0.12260 1.21681 0.35122
106 28 2.41717 2.17810 2.62774 0.32113 170 t x - -
107 1.36805 1.48060 1.37439 1.32840
108 0.04849 3.50958 4.05014 2.58370 0.07850 1.22399 0.34822
109 29 2.57764 2.35132 2.56552 0.28512 194 t x - -
110 1.43829 1.43458 1.24787 1.43829
111 0.04667 3.56670 4.05428 2.49706 0.08591 1.23744 0.34267
112 30 2.47248 2.07688 2.62257 0.33172 215 t x - -
113 1.25120 1.52623 1.70635 1.15531
114 0.08932 3.31524 3.01336 2.81842 0.06156 1.22909 0.34610
115 31 2.25937 2.13157 2.02027 0.43957 248 t x - -
116 1.18172 1.43522 1.72841 1.28150
117 0.07936 2.93117 3.77395 2.46269 0.08906 0.60457 0.79034
118 32 2.04508 2.84981 0.30490 2.58263 280 g x - -
119 1.17665 1.66785 1.66218 1.16056
120 0.05998 3.23615 3.96853 2.83684 0.06040 1.01952 0.44749
121 33 2.45103 0.38098 2.56776 1.87147 317 c x - -
122 1.24153 1.52524 1.60663 1.22783
123 0.05538 3.39046 3.90294 2.73920 0.06680 1.18729 0.36391
124 34 2.22082 0.36258 2.75077 2.02704 347 c x - -
125 1.15008 1.62014 1.86511 1.10673
126 0.06086 3.18178 4.04341 2.94504 0.05403 1.25991 0.33363
127 35 0.27033 2.66664 2.52541 2.43767 388 a x - -
128 1.24951 1.47565 1.41392 1.42074
129 0.07123 3.00373 3.95552 3.13655 0.04440 1.28173 0.32512
130 36 2.83107 2.41670 2.97197 0.22235 439 t x - -
131 1.37071 1.57683 1.38637 1.23972
132 0.05293 3.45216 3.91807 2.54402 0.08181 1.14651 0.38235
133 37 2.52322 2.25084 2.45909 0.31611 465 t x - -
134 1.26335 1.55077 1.59008 1.19965
135 0.07504 3.13329 3.55006 3.08962 0.04659 1.13108 0.38962
136 38 0.45807 2.30687 1.98940 2.03143 512 a x - -
137 1.15472 1.67511 1.53797 1.26320
138 0.09820 3.13076 2.99876 2.79197 0.06326 1.39915 0.28343
139 39 2.37471 0.42180 2.44763 1.80427 550 c x - -
140 1.23785 1.49058 1.48364 1.35502
141 0.06081 3.19472 4.01643 2.41851 0.09327 0.94671 0.49105
142 40 2.32826 1.95481 2.36781 0.40458 578 t x - -
143 1.36586 1.46001 1.43000 1.29720
144 0.05257 3.39673 4.03256 1.84862 0.17133 1.40979 0.27997
145 41 2.68669 2.13935 2.81520 0.28200 592 t x - -
146 1.34965 1.42793 1.45781 1.31633
147 0.04735 3.57826 3.99988 2.09424 0.13144 1.22129 0.34934
148 42 2.55904 2.16444 2.70859 0.29952 609 t x - -
149 1.12072 1.61936 1.63578 1.26895
150 0.07346 3.25910 3.42962 2.85641 0.05919 1.38363 0.28857
151 43 1.99923 1.61027 2.26343 0.57851 646 t x - -
152 1.32290 1.58747 1.61095 1.11018
153 0.06656 3.08568 3.97944 2.44774 0.09046 0.75593 0.63407
154 44 0.23887 2.79899 2.55209 2.60783 675 a x - -
155 1.18557 1.50323 1.59070 1.31590
156 0.05597 3.38637 3.88222 2.46900 0.08847 1.27945 0.32599
157 45 0.29593 2.53488 2.53903 2.32335 701 a x - -
158 1.08710 1.54222 1.59276 1.40430
159 0.07539 2.94521 3.91062 1.91623 0.15918 1.22327 0.34852
160 46 2.58352 2.40524 2.76700 0.25955 725 t x - -
161 1.19685 1.58503 1.74852 1.14293
162 0.06124 3.18279 4.02089 2.82961 0.06085 1.05474 0.42814
163 47 2.13251 2.88788 0.29508 2.50964 764 g x - -
164 1.20891 1.55463 1.68206 1.19000
165 0.06526 3.12574 3.94910 2.41448 0.09367 1.10396 0.40280
166 48 2.23841 2.99164 0.25118 2.72900 792 g x - -
167 1.26330 1.55339 1.52606 1.24355
168 0.05464 3.34968 4.01313 2.78872 0.06347 1.15133 0.38012
169 49 2.57533 0.32900 2.64632 2.01501 824 c x - -
170 1.35118 1.39828 1.40141 1.39516
171 0.04340 3.79297 3.91506 1.59549 0.22666 1.20075 0.35806
172 50 0.46433 2.04127 2.23437 2.00605 833 a x - -
173 1.23062 1.36903 1.62282 1.36182
174 0.05764 3.31530 3.92762 2.28791 0.10700 1.07910 0.41536
175 51 0.27513 2.77017 2.28518 2.57549 853 a x - -
176 1.27958 1.58726 1.46109 1.25394
177 0.05750 3.30072 3.96214 2.60776 0.07656 1.25708 0.33475
178 52 0.20149 2.86434 2.84551 2.69770 883 a x - -
179 1.23645 1.62259 1.71174 1.10368
180 0.05756 3.26729 4.02702 2.54508 0.08172 1.27391 0.32814
181 53 0.26982 2.65833 2.50477 2.46835 911 a x - -
182 1.36005 1.50358 1.48100 1.22550
183 0.06921 3.37553 3.42118 2.36646 0.09851 1.27560 0.32748
184 54 0.40022 2.19284 2.22687 2.20396 934 a x - -
185 1.12070 1.60472 1.53213 1.35895
186 0.05523 3.36752 3.94966 2.42917 0.09224 0.84774 0.55928
187 55 2.11356 0.46400 2.46442 1.79955 960 c x - -
188 1.23932 1.35913 1.50478 1.46331
189 0.05187 3.47055 3.94022 2.35854 0.09933 1.12102 0.39445
190 56 1.85868 0.79440 2.22069 1.25971 983 c x - -
191 1.21951 1.50212 1.51138 1.34185
192 0.06404 3.29054 3.69705 1.75742 0.18933 1.18410 0.36532
193 57 1.33272 2.32720 0.71452 1.90215 999 g x - -
194 1.12229 1.49343 1.56653 1.42255
195 0.04920 3.46654 4.08749 2.17995 0.11996 1.31769 0.31164
196 58 2.48337 0.43652 2.46331 1.68683 1017 c x - -
197 1.34704 1.55461 1.38112 1.28222
198 0.04823 3.61532 3.90311 2.20911 0.11631 1.00864 0.45368
199 59 0.41659 2.44509 1.93972 2.20507 1034 a x - -
200 1.38198 1.38198 1.39194 1.38932
201 0.03641 3.98130 4.06929 1.35873 0.29704 1.31330 0.31325
202 60 0.41612 2.39160 1.97116 2.21075 1037 a x - -
203 1.03649 1.46430 1.57421 1.57557
204 0.04787 3.52599 4.05584 2.32461 0.10294 0.84329 0.56263
205 61 2.66264 2.12302 2.82746 0.28581 1056 t x - -
206 1.36925 1.39635 1.38930 1.39048
207 0.04103 3.97406 3.84419 1.39433 0.28502 1.12555 0.39227
208 62 2.26510 2.13196 2.42551 0.37231 1060 t x - -
209 1.37965 1.39147 1.39147 1.38264
210 0.04136 3.91664 3.88204 1.24613 0.33914 0.95630 0.48501
211 63 0.41244 2.25761 2.16787 2.12907 1062 a x - -
212 1.34515 1.41203 1.41203 1.37753
213 0.04086 3.77867 4.06371 1.30483 0.31638 1.13245 0.38897
214 64 2.51464 0.37905 2.62296 1.82008 1068 c x - -
215 1.39543 1.38753 1.39233 1.37008
216 0.03884 3.90614 4.01884 1.36573 0.29463 1.15716 0.37743
217 65 2.16380 2.11332 2.18714 0.42765 1073 t x - -
218 1.38764 1.38471 1.38519 1.38764
219 0.03603 4.05405 4.01529 1.40080 0.28289 1.06383 0.42332
220 66 2.79349 2.39141 2.87271 0.23478 1075 t x - -
221 1.37227 1.39101 1.39101 1.39101
222 0.03884 4.01734 3.90722 1.39017 0.28639 1.09574 0.40690
223 67 2.82488 2.47749 2.93179 0.21887 1078 t x - -
224 1.38141 1.39112 1.38915 1.38353
225 0.03675 3.99492 4.03549 1.35958 0.29675 1.21867 0.35044
226 68 2.77679 2.30433 2.90694 0.24425 1081 t x - -
227 1.37593 1.38989 1.45520 1.32825
228 0.04566 3.68855 3.93098 1.76176 0.18843 1.07133 0.41939
229 69 2.47698 3.17398 0.19595 2.95437 1093 g x - -
230 1.38264 1.38264 1.39734 1.38264
231 0.05482 3.96677 3.36946 1.40348 0.28202 1.13963 0.38557
232 70 2.84327 0.27906 2.97336 2.00890 1097 c x - -
233 1.38629 1.38629 1.38629 1.38629
234 0.03475 4.08873 4.05197 1.46634 0.26236 0.79234 0.60291
235 71 0.21870 2.83638 2.69251 2.65798 1098 a x - -
236 1.37446 1.37942 1.39640 1.39509
237 0.04066 3.94379 3.88865 1.41905 0.27700 1.24551 0.33939
238 72 2.35233 0.46085 2.23804 1.78715 1103 c x - -
239 1.38536 1.38781 1.38781 1.38421
240 0.03885 4.04214 3.88532 1.39310 0.28542 1.30851 0.31501
241 73 2.57111 0.32543 2.74124 1.98892 1105 c x - -
242 1.38629 1.38629 1.38629 1.38629
243 0.03403 4.09710 4.08422 1.46634 0.26236 1.37004 0.29316
244 74 0.27014 2.61416 2.53262 2.47636 1106 a x - -
245 1.38629 1.38629 1.38629 1.38629
246 0.03889 4.09695 3.83874 1.46634 0.26236 1.37489 0.29151
247 75 0.52873 2.16549 1.91736 1.90409 1107 a x - -
248 1.38629 1.38629 1.38629 1.38629
249 0.04237 4.09207 3.69758 1.46634 0.26236 1.41112 0.27954
250 76 2.33134 0.38082 2.65861 1.90055 1108 c x - -
251 1.38629 1.38629 1.38629 1.38629
252 0.04659 4.08459 3.55121 1.46634 0.26236 1.54765 0.23921
253 77 2.20588 0.45134 2.35553 1.84373 1109 c x - -
254 1.38629 1.38629 1.38629 1.38629
255 0.05904 4.07266 3.21140 1.46634 0.26236 1.68734 0.20458
256 78 2.69018 2.22054 2.82311 0.26898 1110 t x - -
257 1.38629 1.38629 1.38629 1.38629
258 0.08061 4.04912 2.81320 1.46634 0.26236 1.91269 0.15980
259 79 0.16248 3.15867 2.86159 2.98963 1111 a x - -
260 1.38629 1.38629 1.38629 1.38629
261 0.12592 4.00561 2.30158 1.46634 0.26236 2.22059 0.11490
262 80 0.17484 3.04770 2.86638 2.88183 1112 a x - -
263 1.38629 1.38629 1.38629 1.38629
264 0.02045 3.90014 * 1.46634 0.26236 0.00000 *
265 //