Mercurial > repos > iuc > hmmer_hmmconvert

comparison test-data/MADE1.out.pfamtblout @ 4:f92edeb5e4c4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
author iuc
date Mon, 11 Jun 2018 15:52:53 -0400
parents dca536c5cca5
children 8d5ec58d2172
comparison
equal deleted inserted replaced
3:b03487ad64c8 4:f92edeb5e4c4
1 # Sequence scores 1 # Sequence scores
2 # --------------- 2 # ---------------
3 # 3 #
4 # name bits E-value n exp bias description 4 # name bits E-value n exp bias description
5 # ------------------- ------ --------- --- ----- ----- --------------------- 5 # ------------------- ------ --------- --- ----- ----- ---------------------
6 MADE1 51.0 1e-17 5 9.6 28.5 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 6 MADE1 51.8 5.7e-18 5 9.6 27.9 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
7 7
8 # Domain scores 8 # Domain scores
9 # ------------- 9 # -------------
10 # 10 #
11 # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description 11 # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description
12 # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- 12 # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ ---------------------
13 MADE1 33.7 2.7e-12 4 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 13 MADE1 34.1 2e-12 4 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
14 MADE1 27.4 2.4e-10 3 0.7 174456 174577 174456 174514 1 44 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 14 MADE1 27.4 2.4e-10 3 0.7 174456 174577 174456 174498 1 43 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
15 MADE1 2.9 0.011 5 0.7 304021 304109 304060 304107 27 75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 15 MADE1 2.8 0.011 5 0.7 304022 304109 304060 304107 27 75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
16 MADE1 -4.2 1 1 0.1 80030 80073 80044 80068 30 54 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 16 MADE1 -4.5 1 1 0.0 80033 80072 80044 80068 30 54 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
17 MADE1 -6.6 1 2 3.3 154011 154076 154012 154072 13 71 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon 17 MADE1 -6.6 1 2 3.3 154011 154076 154012 154072 13 71 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
18 # 18 #
19 # Program: hmmscan 19 # Program: hmmscan
20 # Version: 3.1b2 (February 2015) 20 # Version: 3.2 (June 2018)
21 # Pipeline mode: SEARCH 21 # Pipeline mode: SEARCH
22 # Query file: /tmp/tmpYWzicI/files/000/dataset_2.dat 22 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat
23 # Target file: /tmp/tmpYWzicI/files/000/dataset_1.dat 23 # Target file: localref.hmm
24 # Option settings: hmmscan --tblout /tmp/tmpYWzicI/files/000/dataset_4.dat --domtblout /tmp/tmpYWzicI/files/000/dataset_5.dat --pfamtblout /tmp/tmpYWzicI/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpYWzicI/files/000/dataset_1.dat /tmp/tmpYWzicI/files/000/dataset_2.dat 24 # Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat
25 # Current dir: /tmp/tmpYWzicI/job_working_directory/000/3 25 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working
26 # Date: Sat Jun 25 19:05:15 2016 26 # Date: Fri Jun 8 12:17:53 2018
27 # [ok] 27 # [ok]