Mercurial > repos > iuc > hmmer_hmmconvert
diff test-data/MADE1.hmm @ 0:dca536c5cca5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
| author | iuc |
|---|---|
| date | Sat, 25 Jun 2016 15:05:21 -0400 |
| parents | |
| children | f92edeb5e4c4 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/MADE1.hmm Sat Jun 25 15:05:21 2016 -0400 @@ -0,0 +1,265 @@ +HMMER3/f [3.1b2 | February 2015] +NAME MADE1 +ACC DF0000629.2 +DESC MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +LENG 80 +MAXL 425 +ALPH DNA +RF yes +MM no +CONS yes +CS no +MAP yes +DATE Sat Jun 25 17:24:24 2016 +NSEQ 1997 +EFFN 3.911818 +CKSUM 3015610723 +STATS LOCAL MSV -8.5408 0.71858 +STATS LOCAL VITERBI -9.6224 0.71858 +STATS LOCAL FORWARD -3.4150 0.71858 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.24533 1.59094 1.62722 1.16493 + 1.38629 1.38629 1.38629 1.38629 + 0.21058 4.11281 1.75146 1.46634 0.26236 0.00000 * + 1 2.69765 2.44396 2.81521 0.24089 1 t x - - + 1.38629 1.38629 1.38629 1.38629 + 0.03960 3.94183 3.94183 1.46634 0.26236 1.10301 0.40327 + 2 2.72939 2.37873 2.85832 0.24244 2 t x - - + 1.38629 1.38629 1.38629 1.38629 + 0.03725 4.00179 4.00179 1.46634 0.26236 1.21367 0.35255 + 3 0.16099 3.16370 2.87328 2.99734 3 a x - - + 1.38629 1.38629 1.38629 1.38629 + 0.03604 4.03416 4.03416 1.46634 0.26236 1.32877 0.30762 + 4 1.98862 2.42132 0.42649 2.10770 4 g x - - + 1.38629 1.38629 1.38629 1.38629 + 0.03539 4.05203 4.05203 1.46634 0.26236 1.35213 0.29933 + 5 1.96369 2.69532 0.36534 2.32099 5 g x - - + 1.38629 1.38629 1.38629 1.38629 + 0.03764 4.06427 3.92372 1.46634 0.26236 1.00259 0.45717 + 6 2.56994 2.11239 2.71946 0.30571 6 t x - - + 1.37159 1.41129 1.39124 1.37159 + 0.03806 3.89715 4.07214 1.50442 0.25122 1.12269 0.39364 + 7 2.58388 2.10353 2.64646 0.31253 12 t x - - + 1.38764 1.38524 1.38764 1.38465 + 0.03494 4.03864 4.09125 1.40070 0.28293 1.44046 0.27026 + 8 2.18552 2.70201 0.28821 2.64645 14 g x - - + 1.38629 1.38629 1.38629 1.38629 + 0.03628 4.09157 3.96779 1.46634 0.26236 1.26997 0.32967 + 9 2.16916 2.82142 0.28427 2.60854 15 g x - - + 1.38091 1.39033 1.38365 1.39033 + 0.03566 4.00237 4.08886 1.38021 0.28972 1.26961 0.32981 + 10 2.45517 2.15232 2.42886 0.34277 18 t x - - + 1.39065 1.39065 1.39065 1.37335 + 0.03536 4.01212 4.09576 1.39554 0.28462 1.25024 0.33748 + 11 2.10260 2.95484 0.28160 2.64222 21 g x - 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- + 1.41047 1.41471 1.36338 1.35797 + 0.03970 3.81957 4.07540 1.65588 0.21186 1.24390 0.34004 + 20 0.33340 2.42691 2.40824 2.25160 66 a x - - + 1.29389 1.44615 1.37917 1.43324 + 0.04223 3.70146 4.09459 1.55158 0.23815 1.01872 0.44794 + 21 2.50563 1.98543 2.69600 0.33746 74 t x - - + 1.39462 1.39462 1.42862 1.32990 + 0.04184 3.80216 3.98177 1.80466 0.17976 1.00279 0.45705 + 22 2.54484 1.97505 2.66483 0.33806 84 t x - - + 1.39134 1.39489 1.38662 1.37246 + 0.03877 3.97504 3.95038 1.37620 0.29107 1.13932 0.38572 + 23 2.10159 2.83856 0.29282 2.61635 88 g x - - + 1.39682 1.39682 1.35536 1.39682 + 0.05046 3.75402 3.65808 1.08330 0.41321 1.13019 0.39004 + 24 2.25298 0.61854 2.50691 1.29221 90 c x - - + 1.35803 1.49605 1.46737 1.24379 + 0.06091 3.28322 3.83564 1.89752 0.16245 1.28788 0.32276 + 25 1.27819 2.23285 0.76242 1.91259 106 g x - - + 1.29024 1.67349 1.68279 1.04597 + 0.05752 3.44263 3.73311 2.58671 0.07825 1.26818 0.33037 + 26 1.86925 2.58352 0.39466 2.33986 131 g x - - + 1.31084 1.49412 1.46666 1.29002 + 0.04698 3.54257 4.07715 2.25245 0.11109 0.86163 0.54900 + 27 2.38297 1.93394 2.39162 0.39800 151 t x - 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