Mercurial > repos > iuc > hmmer_hmmconvert
diff test-data/jackhmmer.domtblout @ 0:dca536c5cca5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
| author | iuc |
|---|---|
| date | Sat, 25 Jun 2016 15:05:21 -0400 |
| parents | |
| children | f92edeb5e4c4 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/jackhmmer.domtblout Sat Jun 25 15:05:21 2016 -0400 @@ -0,0 +1,103 @@ +# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord +# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target +#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- +HBB_MANSP - 146 sp|P02185|MYG_PHYCD - 142 7.7e-69 221.6 0.1 1 1 8.6e-69 8.6e-69 221.5 0.1 1 142 6 145 6 145 0.99 - +HBB_URSMA - 146 sp|P02185|MYG_PHYCD - 142 4.1e-68 219.3 0.2 1 1 4.5e-68 4.5e-68 219.1 0.2 1 142 6 145 6 145 0.99 - +HBB_RABIT - 146 sp|P02185|MYG_PHYCD - 142 5.6e-67 215.6 0.5 1 1 6.3e-67 6.3e-67 215.4 0.5 1 142 6 145 6 145 0.99 - +HBB_CALAR - 146 sp|P02185|MYG_PHYCD - 142 1.5e-66 214.2 0.1 1 1 1.7e-66 1.7e-66 214.0 0.1 1 142 6 145 6 145 0.99 - +HBB_TACAC - 146 sp|P02185|MYG_PHYCD - 142 5e-66 212.5 0.3 1 1 5.6e-66 5.6e-66 212.4 0.3 2 142 7 145 6 145 0.99 - +HBB_COLLI - 146 sp|P02185|MYG_PHYCD - 142 5.2e-66 212.5 0.0 1 1 5.7e-66 5.7e-66 212.3 0.0 1 142 6 145 6 145 0.99 - +HBE_PONPY - 146 sp|P02185|MYG_PHYCD - 142 6.6e-66 212.1 0.2 1 1 7.4e-66 7.4e-66 212.0 0.2 1 142 6 145 6 145 0.99 - +HBB_SUNMU - 146 sp|P02185|MYG_PHYCD - 142 7.2e-66 212.0 0.1 1 1 8e-66 8e-66 211.9 0.1 1 142 6 145 6 145 0.99 - +HBB_ORNAN - 146 sp|P02185|MYG_PHYCD - 142 1e-65 211.5 0.0 1 1 1.2e-65 1.2e-65 211.3 0.0 2 142 7 145 6 145 0.99 - +HBB_SPETO - 146 sp|P02185|MYG_PHYCD - 142 1.5e-65 211.0 0.4 1 1 1.7e-65 1.7e-65 210.8 0.4 2 142 7 145 6 145 0.99 - +HBB_EQUHE - 146 sp|P02185|MYG_PHYCD - 142 1.6e-65 210.9 0.2 1 1 1.8e-65 1.8e-65 210.7 0.2 1 142 6 145 6 145 0.99 - +HBB_SPECI - 146 sp|P02185|MYG_PHYCD - 142 2.3e-65 210.4 0.9 1 1 2.5e-65 2.5e-65 210.2 0.9 2 142 7 145 6 145 0.99 - +HBB_LARRI - 146 sp|P02185|MYG_PHYCD - 142 3e-65 210.0 0.0 1 1 3.4e-65 3.4e-65 209.8 0.0 1 142 6 145 6 145 0.99 - +HBB_TRIIN - 146 sp|P02185|MYG_PHYCD - 142 8e-65 208.6 0.1 1 1 8.9e-65 8.9e-65 208.5 0.1 1 142 6 145 6 145 0.99 - +HBB_TUPGL - 146 sp|P02185|MYG_PHYCD - 142 1.2e-62 201.6 0.0 1 1 1.3e-62 1.3e-62 201.5 0.0 1 142 6 145 6 145 0.99 - +HBA_MESAU - 141 sp|P02185|MYG_PHYCD - 142 1.5e-61 198.0 0.6 1 1 1.7e-61 1.7e-61 197.8 0.6 2 142 6 140 5 140 0.99 - +HBB1_VAREX - 146 sp|P02185|MYG_PHYCD - 142 3e-61 197.0 0.1 1 1 3.4e-61 3.4e-61 196.9 0.1 1 142 6 145 6 145 0.99 - +HBA_MACFA - 141 sp|P02185|MYG_PHYCD - 142 6e-61 196.1 1.1 1 1 6.6e-61 6.6e-61 195.9 1.1 2 142 6 140 5 140 0.99 - +HBA_MACSI - 141 sp|P02185|MYG_PHYCD - 142 9.7e-61 195.4 1.0 1 1 1.1e-60 1.1e-60 195.2 1.0 2 142 6 140 5 140 0.99 - +HBA2_BOSMU - 141 sp|P02185|MYG_PHYCD - 142 3.2e-60 193.7 0.9 1 1 3.6e-60 3.6e-60 193.6 0.9 2 142 6 140 5 140 0.99 - +HBA_PONPY - 141 sp|P02185|MYG_PHYCD - 142 3.2e-60 193.7 2.0 1 1 3.6e-60 3.6e-60 193.5 2.0 2 142 6 140 5 140 0.99 - +HBA2_GALCR - 141 sp|P02185|MYG_PHYCD - 142 4.2e-60 193.3 1.5 1 1 4.7e-60 4.7e-60 193.2 1.5 2 142 6 140 5 140 0.99 - +HBA_AILME - 141 sp|P02185|MYG_PHYCD - 142 5.7e-60 192.9 0.5 1 1 6.3e-60 6.3e-60 192.7 0.5 2 142 6 140 5 140 0.99 - +HBA_FRAPO - 141 sp|P02185|MYG_PHYCD - 142 9.6e-60 192.2 0.6 1 1 1.1e-59 1.1e-59 192.0 0.6 2 142 6 140 5 140 0.99 - +HBA_ANSSE - 141 sp|P02185|MYG_PHYCD - 142 1e-59 192.1 0.9 1 1 1.1e-59 1.1e-59 191.9 0.9 2 142 6 140 5 140 0.99 - +HBA_PHACO - 141 sp|P02185|MYG_PHYCD - 142 2.2e-59 191.0 0.6 1 1 2.4e-59 2.4e-59 190.9 0.6 2 142 6 140 5 140 0.99 - +HBA_PROLO - 141 sp|P02185|MYG_PHYCD - 142 2.4e-59 190.9 0.2 1 1 2.6e-59 2.6e-59 190.7 0.2 2 142 6 140 5 140 0.99 - +HBA_ERIEU - 141 sp|P02185|MYG_PHYCD - 142 4e-59 190.1 0.3 1 1 4.5e-59 4.5e-59 190.0 0.3 2 142 6 140 5 140 0.99 - +HBA_PAGLA - 141 sp|P02185|MYG_PHYCD - 142 4.2e-59 190.1 0.9 1 1 4.7e-59 4.7e-59 189.9 0.9 2 142 6 140 5 140 0.99 - +HBA_TRIOC - 141 sp|P02185|MYG_PHYCD - 142 1.6e-58 188.2 0.6 1 1 1.8e-58 1.8e-58 188.0 0.6 2 142 6 140 5 140 0.99 - +HBAD_CHLME - 141 sp|P02185|MYG_PHYCD - 142 3.9e-58 186.9 0.9 1 1 4.3e-58 4.3e-58 186.8 0.9 2 142 6 140 5 140 0.99 - +HBA_COLLI - 141 sp|P02185|MYG_PHYCD - 142 3.5e-57 183.8 0.4 1 1 3.9e-57 3.9e-57 183.7 0.4 2 142 6 140 5 140 0.99 - +HBBL_RANCA - 146 sp|P02185|MYG_PHYCD - 142 5.8e-57 183.1 0.2 1 1 6.5e-57 6.5e-57 183.0 0.2 1 142 6 145 6 145 0.99 - +HBAD_PASMO - 141 sp|P02185|MYG_PHYCD - 142 6.3e-56 179.8 0.1 1 1 7e-56 7e-56 179.6 0.1 1 142 5 140 5 140 0.99 - +HBAZ_HORSE - 141 sp|P02185|MYG_PHYCD - 142 9.4e-56 179.2 0.1 1 1 1e-55 1e-55 179.1 0.1 2 142 6 140 5 140 0.99 - +HBB2_XENTR - 146 sp|P02185|MYG_PHYCD - 142 4e-55 177.2 0.7 1 1 4.4e-55 4.4e-55 177.0 0.7 1 142 6 145 6 145 0.99 - +MYG_PROGU - 153 sp|P02185|MYG_PHYCD - 142 9.5e-55 176.0 1.6 1 1 1.1e-54 1.1e-54 175.8 1.6 2 142 6 146 5 146 1.00 - +MYG_LYCPI - 153 sp|P02185|MYG_PHYCD - 142 2.6e-54 174.6 5.3 1 1 2.9e-54 2.9e-54 174.4 5.3 2 142 6 146 5 146 1.00 - +MYG_MOUSE - 153 sp|P02185|MYG_PHYCD - 142 1.1e-53 172.5 1.6 1 1 1.2e-53 1.2e-53 172.4 1.6 2 142 6 146 5 146 1.00 - +MYG_SAISC - 153 sp|P02185|MYG_PHYCD - 142 1.2e-53 172.4 4.3 1 1 1.4e-53 1.4e-53 172.2 4.3 2 142 6 146 5 146 1.00 - +MYG_HORSE - 153 sp|P02185|MYG_PHYCD - 142 1.5e-53 172.1 4.2 1 1 1.7e-53 1.7e-53 171.9 4.2 2 142 6 146 5 146 1.00 - +MYG_ESCGI - 153 sp|P02185|MYG_PHYCD - 142 5e-53 170.4 5.7 1 1 5.6e-53 5.6e-53 170.2 5.7 2 142 6 146 5 146 1.00 - +HBA4_SALIR - 142 sp|P02185|MYG_PHYCD - 142 3.8e-52 167.5 0.1 1 1 4.2e-52 4.2e-52 167.4 0.1 2 142 6 141 5 141 0.99 - +HBB2_TRICR - 145 sp|P02185|MYG_PHYCD - 142 5.2e-50 160.6 0.0 1 1 5.8e-50 5.8e-50 160.5 0.0 1 142 6 145 6 145 0.99 - +MYG_MUSAN - 148 sp|P02185|MYG_PHYCD - 142 2.1e-45 145.7 0.4 1 1 2.3e-45 2.3e-45 145.5 0.4 2 142 2 141 1 141 0.99 - +HBB_MANSP - 146 sp|P02024|HBB_GORGO - 143 1.4e-71 230.4 0.0 1 1 1.5e-71 1.5e-71 230.3 0.0 1 143 3 145 3 145 0.99 - +HBB_URSMA - 146 sp|P02024|HBB_GORGO - 143 5.9e-71 228.4 0.1 1 1 6.6e-71 6.6e-71 228.2 0.1 1 143 3 145 3 145 0.99 - +HBB_RABIT - 146 sp|P02024|HBB_GORGO - 143 5.8e-70 225.2 0.3 1 1 6.4e-70 6.4e-70 225.0 0.3 1 143 3 145 3 145 0.99 - +HBB_SUNMU - 146 sp|P02024|HBB_GORGO - 143 2e-69 223.4 0.0 1 1 2.2e-69 2.2e-69 223.3 0.0 1 143 3 145 3 145 0.99 - +HBB_CALAR - 146 sp|P02024|HBB_GORGO - 143 2.4e-69 223.1 0.1 1 1 2.7e-69 2.7e-69 223.0 0.1 1 143 3 145 3 145 0.99 - +HBB_EQUHE - 146 sp|P02024|HBB_GORGO - 143 3.4e-69 222.7 0.1 1 1 3.8e-69 3.8e-69 222.5 0.1 1 143 3 145 3 145 0.99 - +HBB_COLLI - 146 sp|P02024|HBB_GORGO - 143 4.2e-69 222.4 0.0 1 1 4.7e-69 4.7e-69 222.2 0.0 1 143 3 145 3 145 1.00 - +HBB_TACAC - 146 sp|P02024|HBB_GORGO - 143 7.3e-69 221.6 0.1 1 1 8.1e-69 8.1e-69 221.4 0.1 1 143 3 145 3 145 0.99 - +HBE_PONPY - 146 sp|P02024|HBB_GORGO - 143 1.3e-68 220.8 0.1 1 1 1.5e-68 1.5e-68 220.6 0.1 1 143 3 145 3 145 0.99 - +HBB_SPECI - 146 sp|P02024|HBB_GORGO - 143 3e-68 219.6 0.4 1 1 3.3e-68 3.3e-68 219.5 0.4 1 143 3 145 3 145 0.99 - +HBB_SPETO - 146 sp|P02024|HBB_GORGO - 143 5.3e-68 218.8 0.2 1 1 5.9e-68 5.9e-68 218.7 0.2 1 143 3 145 3 145 0.99 - +HBB_ORNAN - 146 sp|P02024|HBB_GORGO - 143 1.3e-67 217.5 0.0 1 1 1.5e-67 1.5e-67 217.3 0.0 1 143 3 145 3 145 0.99 - +HBB_TRIIN - 146 sp|P02024|HBB_GORGO - 143 1.4e-67 217.5 0.0 1 1 1.5e-67 1.5e-67 217.3 0.0 1 143 3 145 3 145 0.99 - +HBB_LARRI - 146 sp|P02024|HBB_GORGO - 143 2.5e-67 216.6 0.0 1 1 2.8e-67 2.8e-67 216.5 0.0 1 143 3 145 3 145 1.00 - +HBB_TUPGL - 146 sp|P02024|HBB_GORGO - 143 6.5e-66 212.0 0.0 1 1 7.2e-66 7.2e-66 211.9 0.0 1 143 3 145 3 145 0.99 - +HBB1_VAREX - 146 sp|P02024|HBB_GORGO - 143 6e-65 208.9 0.0 1 1 6.6e-65 6.6e-65 208.8 0.0 1 143 3 145 3 145 1.00 - +HBA_MESAU - 141 sp|P02024|HBB_GORGO - 143 1.9e-62 200.8 0.3 1 1 2.1e-62 2.1e-62 200.6 0.3 1 143 2 140 2 140 0.99 - +HBA_PONPY - 141 sp|P02024|HBB_GORGO - 143 1.9e-61 197.6 0.7 1 1 2.1e-61 2.1e-61 197.4 0.7 1 143 2 140 2 140 0.98 - +HBBL_RANCA - 146 sp|P02024|HBB_GORGO - 143 2.7e-61 197.0 0.1 1 1 3.1e-61 3.1e-61 196.9 0.1 1 143 3 145 3 145 1.00 - +HBA_MACFA - 141 sp|P02024|HBB_GORGO - 143 3.6e-61 196.6 0.3 1 1 4.1e-61 4.1e-61 196.5 0.3 1 143 2 140 2 140 0.99 - +HBA_MACSI - 141 sp|P02024|HBB_GORGO - 143 5.2e-61 196.1 0.2 1 1 5.8e-61 5.8e-61 196.0 0.2 1 143 2 140 2 140 0.99 - +HBA_AILME - 141 sp|P02024|HBB_GORGO - 143 9e-61 195.4 0.1 1 1 1e-60 1e-60 195.2 0.1 1 143 2 140 2 140 0.99 - +HBB2_XENTR - 146 sp|P02024|HBB_GORGO - 143 1.6e-60 194.6 0.4 1 1 1.8e-60 1.8e-60 194.4 0.4 1 143 3 145 3 145 0.99 - +HBA2_GALCR - 141 sp|P02024|HBB_GORGO - 143 2.7e-60 193.8 0.5 1 1 3e-60 3e-60 193.7 0.5 1 143 2 140 2 140 0.98 - +HBA_FRAPO - 141 sp|P02024|HBB_GORGO - 143 3e-60 193.7 0.4 1 1 3.3e-60 3.3e-60 193.5 0.4 1 143 2 140 2 140 0.99 - +HBA_PHACO - 141 sp|P02024|HBB_GORGO - 143 3e-60 193.7 0.4 1 1 3.4e-60 3.4e-60 193.5 0.4 1 143 2 140 2 140 0.99 - +HBA2_BOSMU - 141 sp|P02024|HBB_GORGO - 143 3.2e-60 193.6 0.3 1 1 3.5e-60 3.5e-60 193.4 0.3 1 143 2 140 2 140 0.99 - +HBA_ERIEU - 141 sp|P02024|HBB_GORGO - 143 1e-59 191.9 0.1 1 1 1.1e-59 1.1e-59 191.8 0.1 1 143 2 140 2 140 0.98 - +HBA_PROLO - 141 sp|P02024|HBB_GORGO - 143 1.4e-59 191.5 0.0 1 1 1.5e-59 1.5e-59 191.4 0.0 1 143 2 140 2 140 0.99 - +HBA_ANSSE - 141 sp|P02024|HBB_GORGO - 143 1.6e-59 191.3 0.4 1 1 1.8e-59 1.8e-59 191.1 0.4 1 143 2 140 2 140 0.99 - +HBA_PAGLA - 141 sp|P02024|HBB_GORGO - 143 1.7e-59 191.2 0.5 1 1 1.9e-59 1.9e-59 191.1 0.5 1 143 2 140 2 140 0.99 - +HBA_TRIOC - 141 sp|P02024|HBB_GORGO - 143 1.1e-58 188.6 0.5 1 1 1.2e-58 1.2e-58 188.4 0.5 1 143 2 140 2 140 0.99 - +HBAD_CHLME - 141 sp|P02024|HBB_GORGO - 143 2.9e-58 187.2 0.6 1 1 3.2e-58 3.2e-58 187.1 0.6 1 143 2 140 2 140 0.98 - +HBAZ_HORSE - 141 sp|P02024|HBB_GORGO - 143 3.4e-58 187.0 0.1 1 1 3.8e-58 3.8e-58 186.9 0.1 1 143 2 140 2 140 0.98 - +HBA_COLLI - 141 sp|P02024|HBB_GORGO - 143 6.7e-58 186.1 0.2 1 1 7.4e-58 7.4e-58 185.9 0.2 1 143 2 140 2 140 0.98 - +HBAD_PASMO - 141 sp|P02024|HBB_GORGO - 143 8.9e-58 185.7 0.1 1 1 9.9e-58 9.9e-58 185.5 0.1 1 143 2 140 2 140 0.98 - +MYG_LYCPI - 153 sp|P02024|HBB_GORGO - 143 1.1e-56 182.1 1.9 1 1 1.3e-56 1.3e-56 181.9 1.9 1 143 2 146 2 146 0.97 - +MYG_SAISC - 153 sp|P02024|HBB_GORGO - 143 1.1e-56 182.1 1.1 1 1 1.3e-56 1.3e-56 181.9 1.1 1 143 2 146 2 146 0.98 - +MYG_ESCGI - 153 sp|P02024|HBB_GORGO - 143 2.5e-56 181.0 1.7 1 1 2.8e-56 2.8e-56 180.8 1.7 1 143 2 146 2 146 0.97 - +MYG_PROGU - 153 sp|P02024|HBB_GORGO - 143 3.2e-56 180.6 0.2 1 1 3.6e-56 3.6e-56 180.4 0.2 1 143 2 146 2 146 0.97 - +MYG_HORSE - 153 sp|P02024|HBB_GORGO - 143 9.5e-56 179.1 1.0 1 1 1.1e-55 1.1e-55 178.9 1.0 1 143 2 146 2 146 0.97 - +MYG_MOUSE - 153 sp|P02024|HBB_GORGO - 143 1.8e-55 178.2 0.3 1 1 2e-55 2e-55 178.0 0.3 1 143 2 146 2 146 0.97 - +HBA4_SALIR - 142 sp|P02024|HBB_GORGO - 143 3.4e-55 177.3 0.1 1 1 3.8e-55 3.8e-55 177.1 0.1 1 143 2 141 2 141 0.98 - +HBB2_TRICR - 145 sp|P02024|HBB_GORGO - 143 1.8e-53 171.7 0.0 1 1 2e-53 2e-53 171.6 0.0 1 143 3 145 3 145 0.99 - +MYG_MUSAN - 148 sp|P02024|HBB_GORGO - 143 1e-44 143.3 0.3 1 1 1.1e-44 1.1e-44 143.2 0.3 5 143 2 141 1 141 0.96 - +# +# Program: jackhmmer +# Version: 3.1b2 (February 2015) +# Pipeline mode: SEARCH +# Query file: /tmp/tmphb1nFG/files/000/dataset_1.dat +# Target file: /tmp/tmphb1nFG/files/000/dataset_2.dat +# Option settings: jackhmmer -N 5 --tblout /tmp/tmphb1nFG/files/000/dataset_4.dat --domtblout /tmp/tmphb1nFG/files/000/dataset_5.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --fast --hand --symfrac 0.5 --wpb --EmL 200 --EmN 200 --EvL 200 --EvN 200 --EfL 100 --EfN 200 --Eft 0.04 --seed 4 --cpu 1 /tmp/tmphb1nFG/files/000/dataset_1.dat /tmp/tmphb1nFG/files/000/dataset_2.dat +# Current dir: /tmp/tmphb1nFG/job_working_directory/000/3 +# Date: Sat Jun 25 19:33:04 2016 +# [ok]