Mercurial > repos > iuc > hmmer_hmmconvert
view test-data/MADE1.out.domtblout @ 4:f92edeb5e4c4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
| author | iuc |
|---|---|
| date | Mon, 11 Jun 2018 15:52:53 -0400 |
| parents | dca536c5cca5 |
| children | 8d5ec58d2172 |
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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 1 5 1 1 -4.5 0.0 30 54 80044 80068 80033 80072 0.81 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 2 5 1 1 -6.6 3.3 13 71 154012 154072 154011 154076 0.75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 3 5 2.4e-10 2.4e-10 27.4 0.7 1 43 174456 174498 174456 174577 0.66 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 4 5 2e-12 2e-12 34.1 0.7 2 80 302388 302466 302387 302466 0.86 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon MADE1 DF0000629.2 80 humanchr1/239220001-239550000 - 330000 5.7e-18 51.8 27.9 5 5 0.011 0.011 2.8 0.7 27 75 304060 304107 304022 304109 0.62 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon # # Program: hmmscan # Version: 3.2 (June 2018) # Pipeline mode: SCAN # Query file: /tmp/tmpp4O0Ju/files/000/dataset_20.dat # Target file: localref.hmm # Option settings: hmmscan --tblout /tmp/tmpp4O0Ju/files/000/dataset_22.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_23.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_24.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 localref.hmm /tmp/tmpp4O0Ju/files/000/dataset_20.dat # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/21/working # Date: Fri Jun 8 12:17:53 2018 # [ok]