Mercurial > repos > iuc > hmmer_hmmemit

comparison hmmemit.xml @ 5:9415f29a3926 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:27:39 -0400
parents 1cd4d0cf8fd9
children e9d622609fb5
comparison
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4:1cd4d0cf8fd9 5:9415f29a3926
73 <option value="--uniglocal">configure profile in unihit glocal mode</option> 73 <option value="--uniglocal">configure profile in unihit glocal mode</option>
74 </param> 74 </param>
75 </when> 75 </when>
76 </conditional> 76 </conditional>
77 77
78
79 <expand macro="seed"/> 78 <expand macro="seed"/>
80 </inputs> 79 </inputs>
81 <outputs> 80 <outputs>
82 <data name="output" format="fasta" label="Sequences generated from $hmmfile.name"> 81 <data name="output" format="fasta" label="Sequences generated from $hmmfile.name">
83 <change_format> 82 <change_format>
84 <when input="oformat_select" value="aln" format="stockholm"/> 83 <when input="oformat.oformat_select" value="aln" format="stockholm"/>
85 <!-- the rest are fasta --> 84 <!-- the rest are fasta -->
86 </change_format> 85 </change_format>
87 </data> 86 </data>
88 </outputs> 87 </outputs>
89 <tests> 88 <tests>
90 <test> 89 <test>
91 <param name="hmmfile" value="globins4.hmm"/> 90 <param name="hmmfile" value="globins4.hmm"/>
92 <param name="oformat_select" value="aln"/> 91 <param name="oformat_select" value="aln"/>
93 <param name="N_aln" value="10"/> 92 <param name="N_aln" value="10"/>
94 <expand macro="seed_test" /> 93 <expand macro="seed_test" />
95 <output name="output" file="globins4-emit.sto" compare="sim_size"/> 94 <output name="output" file="globins4-emit.sto" ftype="stockholm" compare="sim_size">
95 <assert_contents>
96 <has_line_matching expression="# STOCKHOLM.*"/>
97 <has_line_matching expression="//"/>
98 </assert_contents>
99 </output>
96 </test> 100 </test>
97 <test> 101 <test>
98 <param name="hmmfile" value="globins4.hmm"/> 102 <param name="hmmfile" value="globins4.hmm"/>
99 <param name="oformat_select" value="fasta"/> 103 <param name="oformat_select" value="fasta"/>
100 <param name="N_aln" value="10"/> 104 <param name="N_aln" value="10"/>
101 <expand macro="seed_test" /> 105 <expand macro="seed_test" />
102 <output name="output" file="globins4-emit-1.sto" compare="sim_size"/> 106 <output name="output" file="globins4-emit-1.sto" ftype="fasta" compare="sim_size">
107 <assert_contents>
108 <has_line_matching expression=">.*"/>
109 </assert_contents>
110 </output>
103 </test> 111 </test>
104 </tests> 112 </tests>
105 <help><![CDATA[ 113 <help><![CDATA[
106 @HELP_PRE@ 114 @HELP_PRE@
107 115