Mercurial > repos > iuc > hmmer_hmmfetch
comparison hmmfetch.xml @ 9:34b09461bf87 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
author | iuc |
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date | Sun, 25 Feb 2024 18:33:41 +0000 |
parents | 1fca13688921 |
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8:1fca13688921 | 9:34b09461bf87 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool id="hmmer_hmmfetch" name="hmmfetch" version="@TOOL_VERSION@"> | 2 <tool id="hmmer_hmmfetch" name="hmmfetch" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> |
3 <description>retrieve profile HMM(s) from a file</description> | 3 <description>retrieve profile HMM(s) from a file</description> |
4 <macros> | 4 <macros> |
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="bio_tools"/> | 7 <expand macro="bio_tools"/> |
8 <expand macro="requirements"/> | 8 <expand macro="requirements"/> |
9 <expand macro="stdio"/> | 9 <command detect_errors="aggressive"><![CDATA[ |
10 <command><![CDATA[ | |
11 hmmfetch -f '$hmmfile' '$keyfile' > '$output' | 10 hmmfetch -f '$hmmfile' '$keyfile' > '$output' |
12 ]]></command> | 11 ]]></command> |
13 <inputs> | 12 <inputs> |
14 <!-- TODO: implement auto-indexing --> | 13 <!-- TODO: implement auto-indexing --> |
15 <expand macro="input_hmm" /> | 14 <expand macro="input_hmm" /> |