diff test-data/jackhmmer.out @ 7:a28fd001de59 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
author iuc
date Wed, 21 Jul 2021 14:14:16 +0000
parents fb459c8fb2ba
children
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--- a/test-data/jackhmmer.out	Thu Jan 14 15:42:21 2021 +0000
+++ b/test-data/jackhmmer.out	Wed Jul 21 14:14:16 2021 +0000
@@ -1,15 +1,15 @@
 # jackhmmer :: iteratively search a protein sequence against a protein database
-# HMMER 3.3 (Nov 2019); http://hmmer.org/
-# Copyright (C) 2019 Howard Hughes Medical Institute.
+# HMMER 3.3.2 (Nov 2020); http://hmmer.org/
+# Copyright (C) 2020 Howard Hughes Medical Institute.
 # Freely distributed under the BSD open source license.
 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-# query sequence file:             /tmp/tmpfvu1k4r6/files/5/c/1/dataset_5c1435bb-ab6c-4203-863c-578c4a331ea1.dat
-# target sequence database:        /tmp/tmpfvu1k4r6/files/0/c/2/dataset_0c23de62-c430-473e-92ee-a18da9f58231.dat
+# query sequence file:             /tmp/tmpzdnl83p_/files/2/7/9/dataset_27979eae-6ed4-4ade-aa69-7ece7b993e22.dat
+# target sequence database:        /tmp/tmpzdnl83p_/files/e/6/d/dataset_e6d4b38b-8770-49ed-98bb-842ce026d3c8.dat
 # max ASCII text line length:      unlimited
 # Vit filter P threshold:       <= 0.001
 # Fwd filter P threshold:       <= 1e-05
 # random number seed set to:       4
-# number of worker threads:        1
+# number of worker threads:        0
 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
 Query:       sp|P02185|MYG_PHYCD  [L=154]
@@ -606,8 +606,8 @@
 Passed Fwd filter:                        44  (0.977778); expected 0.0 (1e-05)
 Initial search space (Z):                 45  [actual number of targets]
 Domain search space  (domZ):              44  [number of targets reported over threshold]
-# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04
-# Mc/sec: 20.54
+# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03
+# Mc/sec: 28.10
 
 @@ New targets included:   44
 @@ New alignment includes: 45 subseqs (was 1), including original query
@@ -1268,8 +1268,8 @@
 Passed Fwd filter:                        45  (1); expected 0.0 (1e-05)
 Initial search space (Z):                 45  [actual number of targets]
 Domain search space  (domZ):              45  [number of targets reported over threshold]
-# CPU time: 0.22u 0.00s 00:00:00.22 Elapsed: 00:00:00.22
-# Mc/sec: 4.45
+# CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.13
+# Mc/sec: 7.65
 
 @@ New targets included:   1
 @@ New alignment includes: 46 subseqs (was 45), including original query
@@ -1930,8 +1930,8 @@
 Passed Fwd filter:                        45  (1); expected 0.0 (1e-05)
 Initial search space (Z):                 45  [actual number of targets]
 Domain search space  (domZ):              45  [number of targets reported over threshold]
-# CPU time: 0.20u 0.00s 00:00:00.20 Elapsed: 00:00:00.20
-# Mc/sec: 5.00
+# CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.13
+# Mc/sec: 7.59
 
 @@ New targets included:   0
 @@ New alignment includes: 46 subseqs (was 46), including original query
@@ -2547,8 +2547,8 @@
 Passed Fwd filter:                        45  (1); expected 0.0 (1e-05)
 Initial search space (Z):                 45  [actual number of targets]
 Domain search space  (domZ):              45  [number of targets reported over threshold]
-# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.04
-# Mc/sec: 20.84
+# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02
+# Mc/sec: 33.36
 
 @@ New targets included:   45
 @@ New alignment includes: 46 subseqs (was 1), including original query
@@ -3209,8 +3209,8 @@
 Passed Fwd filter:                        45  (1); expected 0.0 (1e-05)
 Initial search space (Z):                 45  [actual number of targets]
 Domain search space  (domZ):              45  [number of targets reported over threshold]
-# CPU time: 0.22u 0.00s 00:00:00.22 Elapsed: 00:00:00.24
-# Mc/sec: 3.96
+# CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.12
+# Mc/sec: 7.64
 
 @@ New targets included:   0
 @@ New alignment includes: 46 subseqs (was 46), including original query