diff test-data/nhmmer.out.dfamtblout @ 5:fb459c8fb2ba draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:37:02 -0400
parents 74089c182a50
children
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line diff
--- a/test-data/nhmmer.out.dfamtblout	Mon Jun 11 15:52:28 2018 -0400
+++ b/test-data/nhmmer.out.dfamtblout	Tue Jun 16 05:37:02 2020 -0400
@@ -1,17 +1,10 @@
-# target name                 accession  query name           accession   hmmfrom hmm to alifrom  ali to envfrom  env to  sq len strand   E-value  score  bias  description of target
-#         ------------------- ---------- --------------------  ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- ---------------------
-humanchr1/239220001-239550000 -          MADE1                DF0000629.2       4      80  302390  302466  302387  302466  330000    +     8.7e-11   39.2   7.4  -
-humanchr1/239220001-239550000 -          MADE1                DF0000629.2       1      43  174456  174498  174456  174518  330000    +     6.4e-08   30.0   8.3  -
-humanchr1/239220001-239550000 -          MADE1                DF0000629.2       1      77  302466  302390  302466  302387  330000    -     9.3e-08   29.5   6.1  -
-humanchr1/239220001-239550000 -          MADE1                DF0000629.2      43      80  174493  174456  174513  174456  330000    -     6.3e-06   23.7   7.0  -
-humanchr1/239220001-239550000 -          MADE1                DF0000629.2      41      72  304073  304104  304053  304109  330000    +         1.4    6.5   7.0  -
+# hit scores
+# ----------
 #
-# Program:         nhmmer
-# Version:         3.2 (June 2018)
-# Pipeline mode:   SEARCH
-# Query file:      /tmp/tmpp4O0Ju/files/000/dataset_36.dat
-# Target file:     /tmp/tmpp4O0Ju/files/000/dataset_37.dat
-# Option settings: nhmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_39.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_36.dat /tmp/tmpp4O0Ju/files/000/dataset_37.dat 
-# Current dir:     /tmp/tmpp4O0Ju/job_working_directory/000/30/working
-# Date:            Fri Jun  8 12:18:56 2018
-# [ok]
+# target name                  acc                  query name             bits   e-value  bias  hmm-st  hmm-en strand  ali-st  ali-en  env-st  env-en  sq-len   description of target
+# -------------------          -------------------  -------------------  ------ --------- ----- ------- ------- ------ ------- ------- ------- ------- -------   ---------------------
+humanchr1/239220001-239550000  DF0000629.2          MADE1                  41.3     4e-11   7.5       4      80    +    302390  302466  302387  302466  330000   -
+humanchr1/239220001-239550000  DF0000629.2          MADE1                  32.8   1.9e-08   8.3       1      43    +    174456  174498  174456  174518  330000   -
+humanchr1/239220001-239550000  DF0000629.2          MADE1                  31.0   6.3e-08   6.7       1      78    -    302466  302389  302466  302387  330000   -
+humanchr1/239220001-239550000  DF0000629.2          MADE1                  25.0   4.9e-06   7.0      43      80    -    174493  174456  174513  174456  330000   -
+humanchr1/239220001-239550000  DF0000629.2          MADE1                   6.9       2.2   7.2      41      71    +    304073  304103  304053  304109  330000   -