Mercurial > repos > iuc > hmmer_hmmscan
comparison test-data/nhmmer.out.dfamtblout @ 3:1a83249ddfff draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit fa7dec5f222510d58f566f4799a04e3731fa03f6
| author | iuc |
|---|---|
| date | Sat, 07 Apr 2018 03:51:55 -0400 |
| parents | |
| children | 01219a31c48e |
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| 2:25fa92aa34c0 | 3:1a83249ddfff |
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| 1 # target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target | |
| 2 # ------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- | |
| 3 humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 1.2e-10 38.6 7.4 - | |
| 4 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 7.8e-08 29.6 8.3 - | |
| 5 humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 1.2e-07 28.9 6.0 - | |
| 6 humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 7.2e-06 23.3 7.0 - | |
| 7 humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.3 7.0 - | |
| 8 # | |
| 9 # Program: nhmmer | |
| 10 # Version: 3.1b2 (February 2015) | |
| 11 # Pipeline mode: SEARCH | |
| 12 # Query file: /tmp/tmpnpsbd_6p/files/000/dataset_1.dat | |
| 13 # Target file: /tmp/tmpnpsbd_6p/files/000/dataset_2.dat | |
| 14 # Option settings: nhmmer --tblout /tmp/tmpnpsbd_6p/files/000/dataset_4.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpnpsbd_6p/files/000/dataset_1.dat /tmp/tmpnpsbd_6p/files/000/dataset_2.dat | |
| 15 # Current dir: /tmp/tmpnpsbd_6p/job_working_directory/000/3/working | |
| 16 # Date: Fri Apr 6 16:39:46 2018 | |
| 17 # [ok] |