Mercurial > repos > iuc > hmmer_hmmscan
diff test-data/MADE1.out.pfamtblout @ 0:216b19e6c317 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
| author | iuc |
|---|---|
| date | Sat, 25 Jun 2016 15:06:16 -0400 |
| parents | |
| children | 01219a31c48e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/MADE1.out.pfamtblout Sat Jun 25 15:06:16 2016 -0400 @@ -0,0 +1,27 @@ +# Sequence scores +# --------------- +# +# name bits E-value n exp bias description +# ------------------- ------ --------- --- ----- ----- --------------------- +MADE1 51.0 1e-17 5 9.6 28.5 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon + +# Domain scores +# ------------- +# +# name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description +# ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- +MADE1 33.7 2.7e-12 4 0.7 302387 302466 302388 302466 2 80 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 27.4 2.4e-10 3 0.7 174456 174577 174456 174514 1 44 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 2.9 0.011 5 0.7 304021 304109 304060 304107 27 75 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 -4.2 1 1 0.1 80030 80073 80044 80068 30 54 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +MADE1 -6.6 1 2 3.3 154011 154076 154012 154072 13 71 MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon +# +# Program: hmmscan +# Version: 3.1b2 (February 2015) +# Pipeline mode: SEARCH +# Query file: /tmp/tmpYWzicI/files/000/dataset_2.dat +# Target file: /tmp/tmpYWzicI/files/000/dataset_1.dat +# Option settings: hmmscan --tblout /tmp/tmpYWzicI/files/000/dataset_4.dat --domtblout /tmp/tmpYWzicI/files/000/dataset_5.dat --pfamtblout /tmp/tmpYWzicI/files/000/dataset_6.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpYWzicI/files/000/dataset_1.dat /tmp/tmpYWzicI/files/000/dataset_2.dat +# Current dir: /tmp/tmpYWzicI/job_working_directory/000/3 +# Date: Sat Jun 25 19:05:15 2016 +# [ok]