Mercurial > repos > iuc > hmmer_hmmsearch
annotate test-data/globins.domtblout @ 9:df7a52791be9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 721504306833ba97c91f285e5bfd86efc04875ee
| author | iuc |
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| date | Sun, 25 Feb 2024 18:31:05 +0000 |
| parents | d753d9169482 |
| children |
| rev | line source |
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b774ae8e1609
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
iuc
parents:
4
diff
changeset
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1 # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord |
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b774ae8e1609
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
iuc
parents:
4
diff
changeset
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2 # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target |
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b774ae8e1609
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
iuc
parents:
4
diff
changeset
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3 #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- |
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b774ae8e1609
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
iuc
parents:
4
diff
changeset
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4 sp|P02024|HBB_GORGO - 147 dataset_a435d3bd-3e95-4c54-859f-736e9bc413b2 - 149 1.3e-70 223.2 0.1 1 1 1.4e-70 1.4e-70 223.0 0.1 1 149 2 147 2 147 0.99 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 |
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b774ae8e1609
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
iuc
parents:
4
diff
changeset
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5 sp|P02185|MYG_PHYCD - 154 dataset_a435d3bd-3e95-4c54-859f-736e9bc413b2 - 149 5.8e-70 221.1 3.3 1 1 6.4e-70 6.4e-70 220.9 3.3 2 149 2 148 1 148 0.99 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 |
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1dde27bbdcba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
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6 # |
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1dde27bbdcba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
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7 # Program: hmmsearch |
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7
d753d9169482
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
iuc
parents:
5
diff
changeset
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8 # Version: 3.3.2 (Nov 2020) |
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1dde27bbdcba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
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9 # Pipeline mode: SEARCH |
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7
d753d9169482
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
iuc
parents:
5
diff
changeset
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10 # Query file: /tmp/tmpzdnl83p_/files/d/7/1/dataset_d71f3df3-1c51-496d-850e-764bcbc1d02f.dat |
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d753d9169482
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
iuc
parents:
5
diff
changeset
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11 # Target file: /tmp/tmpzdnl83p_/files/a/a/2/dataset_aa22e5e1-53c6-4de4-93db-352fe45c0b7c.dat |
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d753d9169482
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
iuc
parents:
5
diff
changeset
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12 # Option settings: hmmsearch --tblout /tmp/tmpzdnl83p_/files/b/3/0/dataset_b30af9dd-9ae0-4a21-b3b4-7f5c6faf9474.dat --domtblout /tmp/tmpzdnl83p_/files/1/3/b/dataset_13ba9c25-323d-45ff-9914-8a2b298330ee.dat --pfamtblout /tmp/tmpzdnl83p_/files/4/4/6/dataset_446d7608-0577-4f0f-a313-8ef4014324ac.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 0 /tmp/tmpzdnl83p_/files/d/7/1/dataset_d71f3df3-1c51-496d-850e-764bcbc1d02f.dat /tmp/tmpzdnl83p_/files/a/a/2/dataset_aa22e5e1-53c6-4de4-93db-352fe45c0b7c.dat |
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d753d9169482
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
iuc
parents:
5
diff
changeset
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13 # Current dir: /tmp/tmpzdnl83p_/job_working_directory/000/24/working |
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d753d9169482
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
iuc
parents:
5
diff
changeset
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14 # Date: Fri Jul 16 10:33:07 2021 |
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0
1dde27bbdcba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 4261b86af790a3535c0b9a8122f92225f8f67b47
iuc
parents:
diff
changeset
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15 # [ok] |