comparison hmmsearch.xml @ 2:4d2ba28f8c8c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit a1a31824fc24d5e652c263b998b7f2363cbd7610

1:e779d71f871a

    <expand macro="seed"/>
  </inputs>
  <outputs>
    <data format="txt" name="output" label="HMM matches of $hmmfile.name in $seqdb.name"/>
    <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $hmmfile.name in $seqdb.name">
      <filter>'tblout' in str(oformat)</filter>
    </data>
    <data format="txt" name="domtblout" label="Table of per-domain hits from HMM matches of $hmmfile.name in $seqdb.name">
      <filter>'domtblout' in str(oformat)</filter>
    </data>
    <data format="txt" name="pfamtblout" label="Table of per-sequence/per-domain hits from HMM matches of $hmmfile.name in $seqdb.name">
      <filter>'pfamtblout' in str(oformat)</filter>
    </data>
  </outputs>
  <tests>
    <test>
      <param name="hmmfile" value="globins4.hmm"/>

2:4d2ba28f8c8c

    <expand macro="seed"/>
  </inputs>
  <outputs>
    <data format="txt" name="output" label="HMM matches of $hmmfile.name in $seqdb.name"/>
    <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $hmmfile.name in $seqdb.name">
      <filter>oformat and 'tblout' in oformat</filter>
    </data>
    <data format="txt" name="domtblout" label="Table of per-domain hits from HMM matches of $hmmfile.name in $seqdb.name">
      <filter>oformat and 'domtblout' in oformat</filter>
    </data>
    <data format="txt" name="pfamtblout" label="Table of per-sequence/per-domain hits from HMM matches of $hmmfile.name in $seqdb.name">
      <filter>oformat and 'pfamtblout' in oformat</filter>
    </data>
  </outputs>
  <tests>
    <test>
      <param name="hmmfile" value="globins4.hmm"/>