Mercurial > repos > iuc > hmmer_hmmsearch
diff test-data/nhmmer.out.dfamtblout @ 5:b774ae8e1609 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
| author | iuc |
|---|---|
| date | Tue, 16 Jun 2020 05:27:07 -0400 |
| parents | 6867ed975e25 |
| children |
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--- a/test-data/nhmmer.out.dfamtblout Mon Jun 11 15:51:39 2018 -0400 +++ b/test-data/nhmmer.out.dfamtblout Tue Jun 16 05:27:07 2020 -0400 @@ -1,17 +1,10 @@ -# target name accession query name accession hmmfrom hmm to alifrom ali to envfrom env to sq len strand E-value score bias description of target -# ------------------- ---------- -------------------- ---------- ------- ------- ------- ------- ------- ------- ------- ------ --------- ------ ----- --------------------- -humanchr1/239220001-239550000 - MADE1 DF0000629.2 4 80 302390 302466 302387 302466 330000 + 8.7e-11 39.2 7.4 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 43 174456 174498 174456 174518 330000 + 6.4e-08 30.0 8.3 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 1 77 302466 302390 302466 302387 330000 - 9.3e-08 29.5 6.1 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 43 80 174493 174456 174513 174456 330000 - 6.3e-06 23.7 7.0 - -humanchr1/239220001-239550000 - MADE1 DF0000629.2 41 72 304073 304104 304053 304109 330000 + 1.4 6.5 7.0 - +# hit scores +# ---------- # -# Program: nhmmer -# Version: 3.2 (June 2018) -# Pipeline mode: SEARCH -# Query file: /tmp/tmpp4O0Ju/files/000/dataset_36.dat -# Target file: /tmp/tmpp4O0Ju/files/000/dataset_37.dat -# Option settings: nhmmer --tblout /tmp/tmpp4O0Ju/files/000/dataset_39.dat --dfamtblout None --notextw -E 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --dna --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_36.dat /tmp/tmpp4O0Ju/files/000/dataset_37.dat -# Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/30/working -# Date: Fri Jun 8 12:18:56 2018 -# [ok] +# target name acc query name bits e-value bias hmm-st hmm-en strand ali-st ali-en env-st env-en sq-len description of target +# ------------------- ------------------- ------------------- ------ --------- ----- ------- ------- ------ ------- ------- ------- ------- ------- --------------------- +humanchr1/239220001-239550000 DF0000629.2 MADE1 41.3 4e-11 7.5 4 80 + 302390 302466 302387 302466 330000 - +humanchr1/239220001-239550000 DF0000629.2 MADE1 32.8 1.9e-08 8.3 1 43 + 174456 174498 174456 174518 330000 - +humanchr1/239220001-239550000 DF0000629.2 MADE1 31.0 6.3e-08 6.7 1 78 - 302466 302389 302466 302387 330000 - +humanchr1/239220001-239550000 DF0000629.2 MADE1 25.0 4.9e-06 7.0 43 80 - 174493 174456 174513 174456 330000 - +humanchr1/239220001-239550000 DF0000629.2 MADE1 6.9 2.2 7.2 41 71 + 304073 304103 304053 304109 330000 -