Mercurial > repos > iuc > hmmer_jackhmmer

comparison test-data/globins.pfamtblout @ 5:5113c71c7031 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7d31599a80c15f11ed00b2b3cbfb77ed6dfc8f3d"
author iuc
date Tue, 16 Jun 2020 05:32:33 -0400
parents 793967b6ae8a
children 6e27bb3f0fa6
comparison
equal deleted inserted replaced
4:793967b6ae8a 5:5113c71c7031
1 # Sequence scores 1 # Sequence scores
2 # --------------- 2 # ---------------
3 # 3 #
4 # name bits E-value n exp bias description 4 # name bits E-value n exp bias description
5 # ------------------- ------ --------- --- ----- ----- --------------------- 5 # ------------------- ------ --------- --- ----- ----- ---------------------
6 sp|P02185|MYG_PHYCD 222.7 1.8e-70 1 1.0 3.2 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 6 sp|P02024|HBB_GORGO 223.2 1.3e-70 1 1.0 0.1 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2
7 sp|P02024|HBB_GORGO 217.2 9.2e-69 1 1.0 0.1 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 7 sp|P02185|MYG_PHYCD 221.1 5.8e-70 1 1.0 3.3 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2
8 8
9 # Domain scores 9 # Domain scores
10 # ------------- 10 # -------------
11 # 11 #
12 # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description 12 # name bits E-value hit bias env-st env-en ali-st ali-en hmm-st hmm-en description
13 # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ --------------------- 13 # ------------------- ------ --------- ----- ----- ------ ------ ------ ------ ------ ------ ---------------------
14 sp|P02185|MYG_PHYCD 222.6 2e-70 1 3.2 1 148 2 148 2 149 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2 14 sp|P02024|HBB_GORGO 223.0 1.4e-70 1 0.1 2 147 2 147 1 149 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2
15 sp|P02024|HBB_GORGO 217.0 1e-68 1 0.1 2 147 2 147 1 149 Hemoglobin subunit beta OS=Gorilla gorilla gorilla GN=HBB PE=1 SV=2 15 sp|P02185|MYG_PHYCD 220.9 6.4e-70 1 3.3 1 148 2 148 2 149 Myoglobin OS=Physeter catodon GN=MB PE=1 SV=2
16 # 16 #
17 # Program: hmmsearch 17 # Program: hmmsearch
18 # Version: 3.2 (June 2018) 18 # Version: 3.3 (Nov 2019)
19 # Pipeline mode: SEARCH 19 # Pipeline mode: SEARCH
20 # Query file: /tmp/tmpp4O0Ju/files/000/dataset_25.dat 20 # Query file: /tmp/tmpqydies2m/files/6/d/6/dataset_6d69e63c-e7d8-450d-b7f8-3e08a51472f0.dat
21 # Target file: /tmp/tmpp4O0Ju/files/000/dataset_26.dat 21 # Target file: /tmp/tmpqydies2m/files/8/2/8/dataset_8282288a-91ea-4a46-89c2-d1f3b4e67c52.dat
22 # Option settings: hmmsearch --tblout /tmp/tmpp4O0Ju/files/000/dataset_28.dat --domtblout /tmp/tmpp4O0Ju/files/000/dataset_29.dat --pfamtblout /tmp/tmpp4O0Ju/files/000/dataset_30.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpp4O0Ju/files/000/dataset_25.dat /tmp/tmpp4O0Ju/files/000/dataset_26.dat 22 # Option settings: hmmsearch --tblout /tmp/tmpqydies2m/files/4/6/b/dataset_46bff7ad-a6de-481d-adb4-50ccab8aacb8.dat --domtblout /tmp/tmpqydies2m/files/b/2/5/dataset_b258e52b-de8c-4e23-86d8-c69ebf229c95.dat --pfamtblout /tmp/tmpqydies2m/files/f/b/8/dataset_fb8cde04-dee0-4b38-9125-bf4766986c0c.dat --notextw -E 10.0 --domE 10.0 --F1 0.02 --F2 0.001 --F3 1e-05 --seed 4 --cpu 1 /tmp/tmpqydies2m/files/6/d/6/dataset_6d69e63c-e7d8-450d-b7f8-3e08a51472f0.dat /tmp/tmpqydies2m/files/8/2/8/dataset_8282288a-91ea-4a46-89c2-d1f3b4e67c52.dat
23 # Current dir: /tmp/tmpp4O0Ju/job_working_directory/000/24/working 23 # Current dir: /tmp/tmpqydies2m/job_working_directory/000/11/working
24 # Date: Fri Jun 8 12:18:13 2018 24 # Date: Thu May 14 18:54:00 2020
25 # [ok] 25 # [ok]