Mercurial > repos > iuc > hmmer_jackhmmer
comparison jackhmmer.xml @ 2:d4fda6672a64 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit a1a31824fc24d5e652c263b998b7f2363cbd7610
| author | iuc |
|---|---|
| date | Wed, 04 Apr 2018 14:00:07 -0400 |
| parents | b23fd24e45a3 |
| children | 036df14999e8 |
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| 1:4e0cbf379bab | 2:d4fda6672a64 |
|---|---|
| 45 <expand macro="seed"/> | 45 <expand macro="seed"/> |
| 46 </inputs> | 46 </inputs> |
| 47 <outputs> | 47 <outputs> |
| 48 <data format="txt" name="output" label="PHMMER search of $seqfile.name in $seqdb.name"/> | 48 <data format="txt" name="output" label="PHMMER search of $seqfile.name in $seqdb.name"/> |
| 49 <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $seqdb.name"> | 49 <data format="txt" name="tblout" label="Table of per-sequence hits from HMM matches of $seqfile.name in $seqdb.name"> |
| 50 <filter>'tblout' in str(oformat)</filter> | 50 <filter>oformat and 'tblout' in oformat</filter> |
| 51 </data> | 51 </data> |
| 52 <data format="txt" name="domtblout" label="Table of per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> | 52 <data format="txt" name="domtblout" label="Table of per-domain hits from HMM matches of $seqfile.name in $seqdb.name"> |
| 53 <filter>'domtblout' in str(oformat)</filter> | 53 <filter>oformat and 'domtblout' in oformat</filter> |
| 54 </data> | 54 </data> |
| 55 </outputs> | 55 </outputs> |
| 56 <tests> | 56 <tests> |
| 57 <test> | 57 <test> |
| 58 <param name="seqfile" value="uniprot_matches.fasta"/> | 58 <param name="seqfile" value="uniprot_matches.fasta"/> |