Mercurial > repos > iuc > hmmer_jackhmmer
diff test-data/jackhmmer.out @ 7:6e27bb3f0fa6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 0bccf5220ed6549db7e053f85bbe917326b0a0be"
| author | iuc |
|---|---|
| date | Wed, 21 Jul 2021 14:16:41 +0000 |
| parents | 5113c71c7031 |
| children |
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--- a/test-data/jackhmmer.out Thu Jan 14 15:38:47 2021 +0000 +++ b/test-data/jackhmmer.out Wed Jul 21 14:16:41 2021 +0000 @@ -1,15 +1,15 @@ # jackhmmer :: iteratively search a protein sequence against a protein database -# HMMER 3.3 (Nov 2019); http://hmmer.org/ -# Copyright (C) 2019 Howard Hughes Medical Institute. +# HMMER 3.3.2 (Nov 2020); http://hmmer.org/ +# Copyright (C) 2020 Howard Hughes Medical Institute. # Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query sequence file: /tmp/tmpfvu1k4r6/files/5/c/1/dataset_5c1435bb-ab6c-4203-863c-578c4a331ea1.dat -# target sequence database: /tmp/tmpfvu1k4r6/files/0/c/2/dataset_0c23de62-c430-473e-92ee-a18da9f58231.dat +# query sequence file: /tmp/tmpzdnl83p_/files/2/7/9/dataset_27979eae-6ed4-4ade-aa69-7ece7b993e22.dat +# target sequence database: /tmp/tmpzdnl83p_/files/e/6/d/dataset_e6d4b38b-8770-49ed-98bb-842ce026d3c8.dat # max ASCII text line length: unlimited # Vit filter P threshold: <= 0.001 # Fwd filter P threshold: <= 1e-05 # random number seed set to: 4 -# number of worker threads: 1 +# number of worker threads: 0 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: sp|P02185|MYG_PHYCD [L=154] @@ -606,8 +606,8 @@ Passed Fwd filter: 44 (0.977778); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 44 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 20.54 +# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 +# Mc/sec: 28.10 @@ New targets included: 44 @@ New alignment includes: 45 subseqs (was 1), including original query @@ -1268,8 +1268,8 @@ Passed Fwd filter: 45 (1); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 45 [number of targets reported over threshold] -# CPU time: 0.22u 0.00s 00:00:00.22 Elapsed: 00:00:00.22 -# Mc/sec: 4.45 +# CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.13 +# Mc/sec: 7.65 @@ New targets included: 1 @@ New alignment includes: 46 subseqs (was 45), including original query @@ -1930,8 +1930,8 @@ Passed Fwd filter: 45 (1); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 45 [number of targets reported over threshold] -# CPU time: 0.20u 0.00s 00:00:00.20 Elapsed: 00:00:00.20 -# Mc/sec: 5.00 +# CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.13 +# Mc/sec: 7.59 @@ New targets included: 0 @@ New alignment includes: 46 subseqs (was 46), including original query @@ -2547,8 +2547,8 @@ Passed Fwd filter: 45 (1); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 45 [number of targets reported over threshold] -# CPU time: 0.05u 0.00s 00:00:00.05 Elapsed: 00:00:00.04 -# Mc/sec: 20.84 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 33.36 @@ New targets included: 45 @@ New alignment includes: 46 subseqs (was 1), including original query @@ -3209,8 +3209,8 @@ Passed Fwd filter: 45 (1); expected 0.0 (1e-05) Initial search space (Z): 45 [actual number of targets] Domain search space (domZ): 45 [number of targets reported over threshold] -# CPU time: 0.22u 0.00s 00:00:00.22 Elapsed: 00:00:00.24 -# Mc/sec: 3.96 +# CPU time: 0.13u 0.00s 00:00:00.13 Elapsed: 00:00:00.12 +# Mc/sec: 7.64 @@ New targets included: 0 @@ New alignment includes: 46 subseqs (was 46), including original query